-
1
-
-
33846017352
-
The nature of systems biology
-
10.1016/j.tim.2006.11.003, 17113776
-
Bruggeman FJ, Westerhoff HV. The nature of systems biology. Trends Microbiol 2007, 15:45-50. 10.1016/j.tim.2006.11.003, 17113776.
-
(2007)
Trends Microbiol
, vol.15
, pp. 45-50
-
-
Bruggeman, F.J.1
Westerhoff, H.V.2
-
2
-
-
33644527950
-
The model organism as a system: integrating 'omics' data sets
-
10.1038/nrm1857, 16496022
-
Joyce AR, Palsson B. The model organism as a system: integrating 'omics' data sets. Nat Rev Mol Cell Biol 2006, 7(3):198-210. 10.1038/nrm1857, 16496022.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, Issue.3
, pp. 198-210
-
-
Joyce, A.R.1
Palsson, B.2
-
3
-
-
68449103579
-
The Systems Biology Graphical Notation
-
10.1038/nbt.1558, 19668183
-
Novére NL, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H. The Systems Biology Graphical Notation. Nat Biotechnol 2009, 27(8):735-741. 10.1038/nbt.1558, 19668183.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.8
, pp. 735-741
-
-
Novére, N.L.1
Hucka, M.2
Mi, H.3
Moodie, S.4
Schreiber, F.5
Sorokin, A.6
Demir, E.7
Wegner, K.8
Aladjem, M.I.9
Wimalaratne, S.M.10
Bergman, F.T.11
Gauges, R.12
Ghazal, P.13
Kawaji, H.14
Li, L.15
Matsuoka, Y.16
Villéger, A.17
Boyd, S.E.18
Calzone, L.19
Courtot, M.20
Dogrusoz, U.21
Freeman, T.C.22
Funahashi, A.23
Ghosh, S.24
Jouraku, A.25
Kim, S.26
Kolpakov, F.27
Luna, A.28
Sahle, S.29
Schmidt, E.30
Watterson, S.31
Wu, G.32
Goryanin, I.33
Kell, D.B.34
Sander, C.35
Sauro, H.36
Snoep, J.L.37
Kohn, K.38
Kitano, H.39
more..
-
4
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
10.1038/nrg1272, 14735121
-
Barabási AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5(2):101-113. 10.1038/nrg1272, 14735121.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
5
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
10.1089/106652700750050961, 11108481
-
Friedman N, Linial M, Nachman I, Pe'er D. Using Bayesian networks to analyze expression data. J Comput Biol 2000, 7(3-4):601-620. 10.1089/106652700750050961, 11108481.
-
(2000)
J Comput Biol
, vol.7
, Issue.3-4
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
6
-
-
0033655775
-
Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements
-
Butte AJ, Kohane IS. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac Symp Biocomput 2000, 418-429.
-
(2000)
Pac Symp Biocomput
, pp. 418-429
-
-
Butte, A.J.1
Kohane, I.S.2
-
7
-
-
33947305781
-
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
10.1186/1471-2105-7-S1-S7, 1764484, 17254312
-
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Favera RD, Califano A. ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 2006, 7(Suppl 1):S7. 10.1186/1471-2105-7-S1-S7, 1764484, 17254312.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 1
-
-
Margolin, A.A.1
Nemenman, I.2
Basso, K.3
Wiggins, C.4
Stolovitzky, G.5
Favera, R.D.6
Califano, A.7
-
8
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
-
10.1371/journal.pbio.0050008, 1764438, 17214507
-
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol 2007, 5:e8. 10.1371/journal.pbio.0050008, 1764438, 17214507.
-
(2007)
PLoS Biol
, vol.5
-
-
Faith, J.J.1
Hayete, B.2
Thaden, J.T.3
Mogno, I.4
Wierzbowski, J.5
Cottarel, G.6
Kasif, S.7
Collins, J.J.8
Gardner, T.S.9
-
10
-
-
70449434583
-
Integrative modeling of transcriptional regulation in response to antirheumatic therapy
-
10.1186/1471-2105-10-262, 2757030, 19703281
-
Hecker M, Goertsches RH, Engelmann R, Thiesen HJ, Guthke R. Integrative modeling of transcriptional regulation in response to antirheumatic therapy. BMC Bioinformatics 2009, 10:262. 10.1186/1471-2105-10-262, 2757030, 19703281.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 262
-
-
Hecker, M.1
Goertsches, R.H.2
Engelmann, R.3
Thiesen, H.J.4
Guthke, R.5
-
11
-
-
27644508196
-
Constructing and analyzing a large-scale gene-to-gene regulatory network-lasso-constrained inference and biological validation
-
10.1109/TCBB.2005.35, 17044188
-
Gustafsson M, Hörnquist M, Lombardi A. Constructing and analyzing a large-scale gene-to-gene regulatory network-lasso-constrained inference and biological validation. IEEE/ACM Trans Comput Biol Bioinform 2005, 2(3):254-261. 10.1109/TCBB.2005.35, 17044188.
-
(2005)
IEEE/ACM Trans Comput Biol Bioinform
, vol.2
, Issue.3
, pp. 254-261
-
-
Gustafsson, M.1
Hörnquist, M.2
Lombardi, A.3
-
12
-
-
0035852785
-
Dynamic modeling of gene expression data
-
10.1073/pnas.98.4.1693, 29319, 11172013
-
Holter NS, Maritan A, Cieplak M, Fedoroff NV, Banavar JR. Dynamic modeling of gene expression data. Proc Natl Acad Sci USA 2001, 98(4):1693-1698. 10.1073/pnas.98.4.1693, 29319, 11172013.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.4
, pp. 1693-1698
-
-
Holter, N.S.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.V.4
Banavar, J.R.5
-
13
-
-
17444430052
-
Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection
-
10.1093/bioinformatics/bti226, 15613398
-
Guthke R, Möller U, Hoffmann M, Thies F, Töpfer S. Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection. Bioinformatics 2005, 21(8):1626-1634. 10.1093/bioinformatics/bti226, 15613398.
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1626-1634
-
-
Guthke, R.1
Möller, U.2
Hoffmann, M.3
Thies, F.4
Töpfer, S.5
-
14
-
-
0043130707
-
Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations
-
de Hoon MJL, Imoto S, Kobayashi K, Ogasawara N, Miyano S. Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations. Pac Symp Biocomput 2003, 17-28.
-
(2003)
Pac Symp Biocomput
, pp. 17-28
-
-
de Hoon, M.J.L.1
Imoto, S.2
Kobayashi, K.3
Ogasawara, N.4
Miyano, S.5
-
15
-
-
20144387371
-
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm
-
10.1093/bioinformatics/bti071, 15514004
-
Kimura S, Ide K, Kashihara A, Kano M, Hatakeyama M, Masui R, Nakagawa N, Yokoyama S, Kuramitsu S, Konagaya A. Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics 2005, 21(7):1154-1163. 10.1093/bioinformatics/bti071, 15514004.
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1154-1163
-
-
Kimura, S.1
Ide, K.2
Kashihara, A.3
Kano, M.4
Hatakeyama, M.5
Masui, R.6
Nakagawa, N.7
Yokoyama, S.8
Kuramitsu, S.9
Konagaya, A.10
-
16
-
-
38349058121
-
Discovery of Gene Regulatory Networks in Aspergillus fumigatus
-
Guthke R, Kniemeyer O, Albrecht D, Brakhage AA, Möller U. Discovery of Gene Regulatory Networks in Aspergillus fumigatus. Lect Notes Bioinf 2007, 4366:22-41.
-
(2007)
Lect Notes Bioinf
, vol.4366
, pp. 22-41
-
-
Guthke, R.1
Kniemeyer, O.2
Albrecht, D.3
Brakhage, A.A.4
Möller, U.5
-
17
-
-
78049407924
-
Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells
-
10.1186/1752-0509-4-148, 3225834, 21050438
-
Linde J, Wilson D, Hube B, Guthke R. Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells. BMC Syst Biol 2010, 4:148. 10.1186/1752-0509-4-148, 3225834, 21050438.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 148
-
-
Linde, J.1
Wilson, D.2
Hube, B.3
Guthke, R.4
-
18
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
10.1126/science.1075090, 12399584
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 2002, 298(5594):799-804. 10.1126/science.1075090, 12399584.
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
19
-
-
34249774309
-
Reconstructing gene regulatory networks with bayesian networks by combining expression data with multiple sources of prior knowledge
-
Article15
-
Werhli AV, Husmeier D. Reconstructing gene regulatory networks with bayesian networks by combining expression data with multiple sources of prior knowledge. Stat Appl Genet Mol Biol 2007, 6. Article15.
-
(2007)
Stat Appl Genet Mol Biol
, vol.6
-
-
Werhli, A.V.1
Husmeier, D.2
-
20
-
-
78649663725
-
Soft Integration of Data for Reverse Engineering
-
Gustafsson M, Hörnquist M, Björkegren J, Tegnér J. Soft Integration of Data for Reverse Engineering. International Conference on Systems Biology,2008 2008, 127-127.
-
(2008)
International Conference on Systems Biology,2008
, pp. 127-127
-
-
Gustafsson, M.1
Hörnquist, M.2
Björkegren, J.3
Tegnér, J.4
-
21
-
-
61349180117
-
Gene regulatory network inference: data integration in dynamic models-a review
-
10.1016/j.biosystems.2008.12.004, 19150482
-
Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R. Gene regulatory network inference: data integration in dynamic models-a review. Biosystems 2009, 96:86-103. 10.1016/j.biosystems.2008.12.004, 19150482.
-
(2009)
Biosystems
, vol.96
, pp. 86-103
-
-
Hecker, M.1
Lambeck, S.2
Toepfer, S.3
van Someren, E.4
Guthke, R.5
-
22
-
-
77955641867
-
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis
-
10.1186/1752-0509-4-116, 2936295, 20718955
-
Kaleta C, Göhler A, Schuster S, Jahreis K, Guthke R, Nikolajewa S. Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst Biol 2010, 4:116. 10.1186/1752-0509-4-116, 2936295, 20718955.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 116
-
-
Kaleta, C.1
Göhler, A.2
Schuster, S.3
Jahreis, K.4
Guthke, R.5
Nikolajewa, S.6
-
23
-
-
77955426412
-
Interaction of phagocytes with filamentous fungi
-
10.1016/j.mib.2010.04.009, 20627805
-
Brakhage AA, Bruns S, Thywissen A, Zipfel PF, Behnsen J. Interaction of phagocytes with filamentous fungi. Curr Opin Microbiol 2010, 13(4):409-415. 10.1016/j.mib.2010.04.009, 20627805.
-
(2010)
Curr Opin Microbiol
, vol.13
, Issue.4
, pp. 409-415
-
-
Brakhage, A.A.1
Bruns, S.2
Thywissen, A.3
Zipfel, P.F.4
Behnsen, J.5
-
24
-
-
0036904836
-
Aspergillosis. Pathogenesis clinical manifestations and therapy
-
vi, 10.1016/S0891-5520(02)00035-1, 12512185
-
Marr KA, Patterson T, Denning D. Aspergillosis. Pathogenesis clinical manifestations and therapy. Infect Dis Clin North Am 2002, 16(4):875-94. vi, 10.1016/S0891-5520(02)00035-1, 12512185.
-
(2002)
Infect Dis Clin North Am
, vol.16
, Issue.4
, pp. 875-894
-
-
Marr, K.A.1
Patterson, T.2
Denning, D.3
-
25
-
-
0035451130
-
Trends in mortality due to invasive mycotic diseases in the United States, 1980-1997
-
10.1086/322606, 11486286
-
McNeil MM, Nash SL, Hajjeh RA, Phelan MA, Conn LA, Plikaytis BD, Warnock DW. Trends in mortality due to invasive mycotic diseases in the United States, 1980-1997. Clin Infect Dis 2001, 33(5):641-647. 10.1086/322606, 11486286.
-
(2001)
Clin Infect Dis
, vol.33
, Issue.5
, pp. 641-647
-
-
McNeil, M.M.1
Nash, S.L.2
Hajjeh, R.A.3
Phelan, M.A.4
Conn, L.A.5
Plikaytis, B.D.6
Warnock, D.W.7
-
26
-
-
0036174370
-
The direct cost and incidence of systemic fungal infections
-
10.1046/j.1524-4733.2002.51108.x, 11873380
-
Wilson LS, Reyes CM, Stolpman M, Speckman J, Allen K, Beney J. The direct cost and incidence of systemic fungal infections. Value Health 2002, 5:26-34. 10.1046/j.1524-4733.2002.51108.x, 11873380.
-
(2002)
Value Health
, vol.5
, pp. 26-34
-
-
Wilson, L.S.1
Reyes, C.M.2
Stolpman, M.3
Speckman, J.4
Allen, K.5
Beney, J.6
-
27
-
-
64049100955
-
Iron in innate immunity: starve the invaders
-
10.1016/j.coi.2009.01.011, 2668730, 19231148
-
Ganz T. Iron in innate immunity: starve the invaders. Curr Opin Immunol 2009, 21:63-67. 10.1016/j.coi.2009.01.011, 2668730, 19231148.
-
(2009)
Curr Opin Immunol
, vol.21
, pp. 63-67
-
-
Ganz, T.1
-
28
-
-
0033759220
-
Iron metabolism in pathogenic bacteria
-
10.1146/annurev.micro.54.1.881, 11018148
-
Ratledge C, Dover LG. Iron metabolism in pathogenic bacteria. Annu Rev Microbiol 2000, 54:881-941. 10.1146/annurev.micro.54.1.881, 11018148.
-
(2000)
Annu Rev Microbiol
, vol.54
, pp. 881-941
-
-
Ratledge, C.1
Dover, L.G.2
-
30
-
-
34447326483
-
Interaction of HapX with the CCAAT-binding complex-a novel mechanism of gene regulation by iron
-
10.1038/sj.emboj.7601752, 1914100, 17568774
-
Hortschansky P, Eisendle M, Al-Abdallah Q, Schmidt AD, Bergmann S, Thön M, Kniemeyer O, Abt B, Seeber B, Werner ER, Kato M, Brakhage AA, Haas H. Interaction of HapX with the CCAAT-binding complex-a novel mechanism of gene regulation by iron. EMBO J 2007, 26(13):3157-3168. 10.1038/sj.emboj.7601752, 1914100, 17568774.
-
(2007)
EMBO J
, vol.26
, Issue.13
, pp. 3157-3168
-
-
Hortschansky, P.1
Eisendle, M.2
Al-Abdallah, Q.3
Schmidt, A.D.4
Bergmann, S.5
Thön, M.6
Kniemeyer, O.7
Abt, B.8
Seeber, B.9
Werner, E.R.10
Kato, M.11
Brakhage, A.A.12
Haas, H.13
-
31
-
-
51649095152
-
SreA-mediated iron regulation in Aspergillus fumigatus
-
10.1111/j.1365-2958.2008.06376.x, 2610380, 18721228
-
Schrettl M, Kim HS, Eisendle M, Kragl C, Nierman WC, Heinekamp T, Werner ER, Jacobsen I, Illmer P, Yi H, Brakhage AA, Haas H. SreA-mediated iron regulation in Aspergillus fumigatus. Mol Microbiol 2008, 70:27-43. 10.1111/j.1365-2958.2008.06376.x, 2610380, 18721228.
-
(2008)
Mol Microbiol
, vol.70
, pp. 27-43
-
-
Schrettl, M.1
Kim, H.S.2
Eisendle, M.3
Kragl, C.4
Nierman, W.C.5
Heinekamp, T.6
Werner, E.R.7
Jacobsen, I.8
Illmer, P.9
Yi, H.10
Brakhage, A.A.11
Haas, H.12
-
32
-
-
78149308102
-
HapX-mediated adaption to iron starvation is crucial for virulence of Aspergillus fumigatus
-
Schrettl M, Beckmann N, Varga J, Heinekamp T, Jacobsen ID, Jöchl C, Moussa TA, Wang S, Gsaller F, Blatzer M, Werner ER, Niermann WC, Brakhage AA, Haas H. HapX-mediated adaption to iron starvation is crucial for virulence of Aspergillus fumigatus. PLoS Pathog 2010, 6(9).
-
(2010)
PLoS Pathog
, vol.6
, Issue.9
-
-
Schrettl, M.1
Beckmann, N.2
Varga, J.3
Heinekamp, T.4
Jacobsen, I.D.5
Jöchl, C.6
Moussa, T.A.7
Wang, S.8
Gsaller, F.9
Blatzer, M.10
Werner, E.R.11
Niermann, W.C.12
Brakhage, A.A.13
Haas, H.14
-
33
-
-
38349047954
-
The NetGenerator Algorithm: Reconstruction of Gene Regulatory Networks
-
Toepfer S, Guthke R, Driesch D, Woetzel D, Pfaff M. The NetGenerator Algorithm: Reconstruction of Gene Regulatory Networks. Lecture Notes in Bioinformatics 2007, 4366:119-130.
-
(2007)
Lecture Notes in Bioinformatics
, vol.4366
, pp. 119-130
-
-
Toepfer, S.1
Guthke, R.2
Driesch, D.3
Woetzel, D.4
Pfaff, M.5
-
34
-
-
47049127797
-
Candida albicans ferric reductases are differentially regulated in response to distinct forms of iron limitation by the Rim101 and CBF transcription factors
-
10.1128/EC.00108-08, 2446673, 18503007
-
Baek YU, Li M, Davis DA. Candida albicans ferric reductases are differentially regulated in response to distinct forms of iron limitation by the Rim101 and CBF transcription factors. Eukaryot Cell 2008, 7(7):1168-1179. 10.1128/EC.00108-08, 2446673, 18503007.
-
(2008)
Eukaryot Cell
, vol.7
, Issue.7
, pp. 1168-1179
-
-
Baek, Y.U.1
Li, M.2
Davis, D.A.3
-
35
-
-
26944459973
-
Novel regulatory function for the CCAAT-binding factor in Candida albicans
-
10.1128/EC.4.10.1662-1676.2005, 1265901, 16215174
-
Johnson DC, Cano KE, Kroger EC, McNabb DS. Novel regulatory function for the CCAAT-binding factor in Candida albicans. Eukaryot Cell 2005, 4(10):1662-1676. 10.1128/EC.4.10.1662-1676.2005, 1265901, 16215174.
-
(2005)
Eukaryot Cell
, vol.4
, Issue.10
, pp. 1662-1676
-
-
Johnson, D.C.1
Cano, K.E.2
Kroger, E.C.3
McNabb, D.S.4
-
36
-
-
59149085576
-
Candida albicans ferric reductase FRP1 is regulated by direct interaction with Rim101p transcription factor
-
10.1111/j.1567-1364.2008.00468.x, 19076241
-
Liang Y, Gui L, Wei DS, Zheng W, Xing LJ, Li MC. Candida albicans ferric reductase FRP1 is regulated by direct interaction with Rim101p transcription factor. FEMS Yeast Res 2009, 9(2):270-277. 10.1111/j.1567-1364.2008.00468.x, 19076241.
-
(2009)
FEMS Yeast Res
, vol.9
, Issue.2
, pp. 270-277
-
-
Liang, Y.1
Gui, L.2
Wei, D.S.3
Zheng, W.4
Xing, L.J.5
Li, M.C.6
-
37
-
-
84855278233
-
SREBP coordinats iron and ergosterol homeostasis to mediate triazole drug and hypoxia responses in the human fungal pahtogen Aspergillus fumigatus
-
Blatzer M, Barker BM, Willger SD, Beckmann N, Blosser SJ, Cornish EJ, Mazurie A, Grahl N, Haas H, Cramer RA. SREBP coordinats iron and ergosterol homeostasis to mediate triazole drug and hypoxia responses in the human fungal pahtogen Aspergillus fumigatus. PLoS Genetics 2011, 7(12).
-
(2011)
PLoS Genetics
, vol.7
, Issue.12
-
-
Blatzer, M.1
Barker, B.M.2
Willger, S.D.3
Beckmann, N.4
Blosser, S.J.5
Cornish, E.J.6
Mazurie, A.7
Grahl, N.8
Haas, H.9
Cramer, R.A.10
-
38
-
-
34249847958
-
PcaMethods-a bioconductor package providing PCA methods for incomplete data
-
10.1093/bioinformatics/btm069, 17344241
-
Stacklies W, Redestig H, Scholz M, Walther D, Selbig J. pcaMethods-a bioconductor package providing PCA methods for incomplete data. Bioinformatics 2007, 23(9):1164-1167. 10.1093/bioinformatics/btm069, 17344241.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1164-1167
-
-
Stacklies, W.1
Redestig, H.2
Scholz, M.3
Walther, D.4
Selbig, J.5
-
40
-
-
79952039532
-
FungiFun: A web-based application for functional categorization of fungal genes and proteins
-
Priebe S, Linde J, Albrecht D, Guthke R, Brakhage AA. FungiFun: A web-based application for functional categorization of fungal genes and proteins. Fungal Genet Biol 2010, 48:353-358., http://dx.doi.org/10.1016/j.fgb.2010.11.001
-
(2010)
Fungal Genet Biol
, vol.48
, pp. 353-358
-
-
Priebe, S.1
Linde, J.2
Albrecht, D.3
Guthke, R.4
Brakhage, A.A.5
-
41
-
-
9144257282
-
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
-
10.1093/nar/gkh894, 524302, 15486203
-
Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Guöldener U, Mannhaupt G, Muönsterkötter M, Mewes HW. The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 2004, 32(18):5539-5545. 10.1093/nar/gkh894, 524302, 15486203.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.18
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
Albermann, K.4
Hani, J.5
Mokrejs, M.6
Tetko, I.7
Guöldener, U.8
Mannhaupt, G.9
Muönsterkötter, M.10
Mewes, H.W.11
-
42
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
43
-
-
33645222762
-
Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast
-
10.1128/MCB.26.7.2817-2831.2006, 1430309, 16537923
-
Todd BL, Stewart EV, Burg JS, Hughes AL, Espenshade PJ. Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast. Mol Cell Biol 2006, 26(7):2817-2831. 10.1128/MCB.26.7.2817-2831.2006, 1430309, 16537923.
-
(2006)
Mol Cell Biol
, vol.26
, Issue.7
, pp. 2817-2831
-
-
Todd, B.L.1
Stewart, E.V.2
Burg, J.S.3
Hughes, A.L.4
Espenshade, P.J.5
-
44
-
-
0032524465
-
Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution
-
10.1016/S0969-2126(98)00067-7, 9634703
-
Párraga A, Bellsolell L, Ferré-D'Amaré AR, Burley SK. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure 1998, 6(5):661-672. 10.1016/S0969-2126(98)00067-7, 9634703.
-
(1998)
Structure
, vol.6
, Issue.5
, pp. 661-672
-
-
Párraga, A.1
Bellsolell, L.2
Ferré-D'Amaré, A.R.3
Burley, S.K.4
-
45
-
-
80053946203
-
SiTar: a novel tool for transcription factor binding site prediction
-
10.1093/bioinformatics/btr492, 21893518
-
Fazius E, Shelest V, Shelest E. SiTar: a novel tool for transcription factor binding site prediction. Bioinformatics 2011, 27(20):2806-2811. 10.1093/bioinformatics/btr492, 21893518.
-
(2011)
Bioinformatics
, vol.27
, Issue.20
, pp. 2806-2811
-
-
Fazius, E.1
Shelest, V.2
Shelest, E.3
-
46
-
-
9244246998
-
Biosynthesis and uptake of siderophores is controlled by the PacC-mediated ambient-pH Regulatory system in Aspergillus nidulans
-
10.1128/EC.3.2.561-563.2004, 387658, 15075286
-
Eisendle M, Oberegger H, Buttinger R, Illmer P, Haas H. Biosynthesis and uptake of siderophores is controlled by the PacC-mediated ambient-pH Regulatory system in Aspergillus nidulans. Eukaryot Cell 2004, 3(2):561-563. 10.1128/EC.3.2.561-563.2004, 387658, 15075286.
-
(2004)
Eukaryot Cell
, vol.3
, Issue.2
, pp. 561-563
-
-
Eisendle, M.1
Oberegger, H.2
Buttinger, R.3
Illmer, P.4
Haas, H.5
-
47
-
-
34247547435
-
Sre1p, a regulator of oxygen sensing and sterol homeostasis, is required for virulence in Cryptococcus neoformans
-
10.1111/j.1365-2958.2007.05676.x, 17462012
-
Chang YC, Bien CM, Lee H, Espenshade PJ, Kwon-Chung KJ. Sre1p, a regulator of oxygen sensing and sterol homeostasis, is required for virulence in Cryptococcus neoformans. Mol Microbiol 2007, 64(3):614-629. 10.1111/j.1365-2958.2007.05676.x, 17462012.
-
(2007)
Mol Microbiol
, vol.64
, Issue.3
, pp. 614-629
-
-
Chang, Y.C.1
Bien, C.M.2
Lee, H.3
Espenshade, P.J.4
Kwon-Chung, K.J.5
-
48
-
-
57149083070
-
A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus
-
10.1371/journal.ppat.1000200, 2572145, 18989462
-
Willger SD, Puttikamonkul S, Kim KH, Burritt JB, Grahl N, Metzler LJ, Barbuch R, Bard M, Lawrence CB, Cramer RA. A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus. PLoS Pathog 2008, 4(11):e1000200. 10.1371/journal.ppat.1000200, 2572145, 18989462.
-
(2008)
PLoS Pathog
, vol.4
, Issue.11
-
-
Willger, S.D.1
Puttikamonkul, S.2
Kim, K.H.3
Burritt, J.B.4
Grahl, N.5
Metzler, L.J.6
Barbuch, R.7
Bard, M.8
Lawrence, C.B.9
Cramer, R.A.10
-
49
-
-
70350357467
-
Maintaining Mammalian iron and oxygen homeostasis: sensors, regulation, and cross-talk
-
10.1111/j.1749-6632.2009.05038.x, 19845604
-
Salahudeen AA, Bruick RK. Maintaining Mammalian iron and oxygen homeostasis: sensors, regulation, and cross-talk. Ann N Y Acad Sci 2009, 1177:30-38. 10.1111/j.1749-6632.2009.05038.x, 19845604.
-
(2009)
Ann N Y Acad Sci
, vol.1177
, pp. 30-38
-
-
Salahudeen, A.A.1
Bruick, R.K.2
-
50
-
-
79961062166
-
SidL, an Aspergillus fumigatus transacetylase involved in biosynthesis of the siderophores ferricrocin and hydroxyferricrocin
-
10.1128/AEM.00182-11, 3147410, 21622789
-
Blatzer M, Schrettl M, Sarg B, Lindner HH, Pfaller K, Haas H. SidL, an Aspergillus fumigatus transacetylase involved in biosynthesis of the siderophores ferricrocin and hydroxyferricrocin. Appl Environ Microbiol 2011, 77(14):4959-4966. 10.1128/AEM.00182-11, 3147410, 21622789.
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.14
, pp. 4959-4966
-
-
Blatzer, M.1
Schrettl, M.2
Sarg, B.3
Lindner, H.H.4
Pfaller, K.5
Haas, H.6
-
51
-
-
74849135205
-
A perspective of promoter architecture from the CCAAT box
-
10.4161/cc.8.24.10240, 19946211
-
Dolfini D, Zambelli F, Pavesi G, Mantovani R. A perspective of promoter architecture from the CCAAT box. Cell Cycle 2009, 8(24):4127-4137. 10.4161/cc.8.24.10240, 19946211.
-
(2009)
Cell Cycle
, vol.8
, Issue.24
, pp. 4127-4137
-
-
Dolfini, D.1
Zambelli, F.2
Pavesi, G.3
Mantovani, R.4
-
52
-
-
77949681022
-
Missing values in gel-based proteomics
-
10.1002/pmic.200800576, 20077407
-
Albrecht D, Kniemeyer O, Brakhage AA, Guthke R. Missing values in gel-based proteomics. Proteomics 2010, 10(6):1202-1211. 10.1002/pmic.200800576, 20077407.
-
(2010)
Proteomics
, vol.10
, Issue.6
, pp. 1202-1211
-
-
Albrecht, D.1
Kniemeyer, O.2
Brakhage, A.A.3
Guthke, R.4
-
53
-
-
0242638596
-
Imputing Missing Data for Gene Expression Arrays
-
Hastie T, Tibshirani R, Sherlock G, Eisen M, Brown P, Botstein D. Imputing Missing Data for Gene Expression Arrays. 1999,
-
(1999)
-
-
Hastie, T.1
Tibshirani, R.2
Sherlock, G.3
Eisen, M.4
Brown, P.5
Botstein, D.6
|