-
2
-
-
36549027333
-
Exploring conservation of transcription factor binding sites with CONREAL
-
Berezikov, E. et al. (2007) Exploring conservation of transcription factor binding sites with CONREAL. Methods Mol. Biol., 395, 437-448.
-
(2007)
Methods Mol. Biol.
, vol.395
, pp. 437-448
-
-
Berezikov, E.1
-
3
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins Statistical-mechanical theory and application to operators and promoters
-
Berg, O.G. and von Hippel, P.H. (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol., 193, 723-750.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
4
-
-
38549096565
-
JASPAR, the open access database of transcription factorbindng profiles: new content and tools in the 2008 update
-
Bryne, J.C. et al. (2008) JASPAR, the open access database of transcription factorbindng profiles: new content and tools in the 2008 update. Nucleic Acids Res., 36, D102-D106.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Bryne, J.C.1
-
5
-
-
21444443478
-
MatInspector and beyond: promoter analysis based on transcription factor binding sites
-
Cartharius, K. et al. (2005) MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics, 21, 2933-2942.
-
(2005)
Bioinformatics
, vol.21
, pp. 2933-2942
-
-
Cartharius, K.1
-
6
-
-
23144431724
-
P-Match: transcription factor binding site search by combining patterns and weight matrices
-
Chekmenev, D.S. et al. (2005) P-Match: transcription factor binding site search by combining patterns and weight matrices. Nucleic Acids Res., 33, W432-W437.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Chekmenev, D.S.1
-
7
-
-
0037100636
-
Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
-
Frith, M.C. et al. (2002) Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences. Nucleic Acids Res., 30, 3214-3224.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3214-3224
-
-
Frith, M.C.1
-
8
-
-
66349126697
-
DISCOVER: a feature-based discriminative method for motif search in complex genomes
-
Fu, W. et al. (2009) DISCOVER: a feature-based discriminative method for motif search in complex genomes. Bioinformatics, 25, i321-i329.
-
(2009)
Bioinformatics
, vol.25
-
-
Fu, W.1
-
9
-
-
78049460643
-
An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
-
Garcia-Alcalde, F. et al. (2010) An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs. BMC Bioinformatics, 11, 551.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 551
-
-
Garcia-Alcalde, F.1
-
10
-
-
0036133044
-
AliBaba2: context specific identification of transcription factor binding sites
-
Grabe, N. (2002) AliBaba2: context specific identification of transcription factor binding sites. In Silico Biol., 2, S1-S15.
-
(2002)
In Silico Biol
, vol.2
-
-
Grabe, N.1
-
11
-
-
33747817698
-
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees
-
Grau, J. et al. (2006) VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. Nucleic Acids Res., 34, W529-W533.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Grau, J.1
-
12
-
-
58149293009
-
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes
-
Hestand, M.S. et al. (2008) CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. BMC Bioinformatics, 9, 495.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 495
-
-
Hestand, M.S.1
-
13
-
-
0033452784
-
Genome-wide analysis of gene expression regulated by the yeast cell wall integrity signalling pathway
-
Jung, U.S. and Levin, D.E. (1999) Genome-wide analysis of gene expression regulated by the yeast cell wall integrity signalling pathway. Mol. Microbiol., 34, 1049-1057.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 1049-1057
-
-
Jung, U.S.1
Levin, D.E.2
-
14
-
-
0041853625
-
MATCH A tool for searching transcription factor binding sites in DNA sequences
-
Kel, A.E. et al. (2003) MATCH A tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res., 31, 3576-3579.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
-
-
Kel, A.E.1
-
15
-
-
0037208166
-
TRANSFAC® transcriptional regulation, from patterns to profiles
-
Matys, V. et al. (2003) TRANSFAC® transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 374-378
-
-
Matys, V.1
-
16
-
-
70350449676
-
Prediction of motifs based on a repeated-measures model for integrating cross-species sequence and expression data
-
Article 36
-
Siewert, E.A. and Kechris, K.J. (2009) Prediction of motifs based on a repeated-measures model for integrating cross-species sequence and expression data. Stat. Appl. Genet. Mol. Biol., 8, Article 36.
-
(2009)
Stat. Appl. Genet. Mol. Biol.
, vol.8
-
-
Siewert, E.A.1
Kechris, K.J.2
-
17
-
-
0043123063
-
Gibbs Recursive Sampler: finding transcription factor binding sites
-
Thompson, W. et al. (2003) Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res., 31, 3580-3585.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3580-3585
-
-
Thompson, W.1
-
18
-
-
52749097035
-
Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules
-
Turatsinze, J.V. et al. (2008) Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules. Nat. Protoc., 3, 1578-1588.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1578-1588
-
-
Turatsinze, J.V.1
|