-
3
-
-
0037154274
-
Stereotyped and specific gene expression programs in human innate immune response to bacteria
-
Boldrick,J.C., Alizadeh,A.A., Diehn,M., Dudoit,S., Liu,C.L., Belcher,C.E., Botstein,D., Staudt,L.M., Brown,P.O. and Relman,D.A. (2002) Stereotyped and specific gene expression programs in human innate immune response to bacteria. Proc. Natl Acad. Sci., USA, 99, 972-977.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 972-977
-
-
Boldrick, J.C.1
Alizadeh, A.A.2
Diehn, M.3
Dudoit, S.4
Liu, C.L.5
Belcher, C.E.6
Botstein, D.7
Staudt, L.M.8
Brown, P.O.9
Relman, D.A.10
-
4
-
-
0037399775
-
Cluster validation techniques for genome expression data
-
Bolshakova,N. and Azuaje,F. (2003) Cluster validation techniques for genome expression data. Signal Process., 83, 825-833.
-
(2003)
Signal Process.
, vol.83
, pp. 825-833
-
-
Bolshakova, N.1
Azuaje, F.2
-
5
-
-
0038053156
-
New analytical techniques for the interpretation of microarray data
-
Campbell,C. (2003) New analytical techniques for the interpretation of microarray data. Bioinformatics, 19, 1045.
-
(2003)
Bioinformatics
, vol.19
, pp. 1045
-
-
Campbell, C.1
-
6
-
-
0032611513
-
Modeling gene expression with differential equations
-
Chen,T., He,H.L. and Church,G.M. (1999) Modeling gene expression with differential equations. Pac. Symp. Biocomput., 4 29-40.
-
(1999)
Pac. Symp. Biocomput.
, vol.4
, pp. 29-40
-
-
Chen, T.1
He, H.L.2
Church, G.M.3
-
7
-
-
0347724100
-
GIS: A biomedical text-mining system for gene information discovery
-
Chiang,J.-H., Yu,H.-C. and Hsu,H.-J. (2004) GIS: a biomedical text-mining system for gene information discovery. Bioinformatics, 20, 120-121.
-
(2004)
Bioinformatics
, vol.20
, pp. 120-121
-
-
Chiang, J.-H.1
Yu, H.-C.2
Hsu, H.-J.3
-
8
-
-
0036500834
-
Reverse engineering of biological complexity
-
Csete,M.E. and Doyle,J.C. (2002). Reverse engineering of biological complexity. Science, 295, 1664-1669.
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
9
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
De Jong,H. (2002) Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol., 9, 67-103.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 67-103
-
-
De Jong, H.1
-
10
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
D'haeseleer,P., Liang,S. and Somogyi,R. (2000) Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics, 16, 707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
11
-
-
0032612220
-
Linear modeling of mRNA expression levels during CNS development and injury
-
D'haeseleer,P., Wen,X., Fuhrman,S. and Somogyi,R. (1999) Linear modeling of mRNA expression levels during CNS development and injury, Pac. Symp. Biocomput., 4, 41-52.
-
(1999)
Pac. Symp. Biocomput.
, vol.4
, pp. 41-52
-
-
D'haeseleer, P.1
Wen, X.2
Fuhrman, S.3
Somogyi, R.4
-
12
-
-
0037172724
-
A prediction-based resampling method to estimate the number of clusters in a dataset
-
Dudoit,S. and J. Fridlyand (2002) A prediction-based resampling method to estimate the number of clusters in a dataset. Genome Biol., 3, 0036.1-0036.21.
-
(2002)
Genome Biol.
, vol.3
-
-
Dudoit, S.1
Fridlyand, J.2
-
13
-
-
0035296809
-
On the number of clusters and the fuzziness index for unsupervised FCA application to BOLD fMRI time series
-
Fadili,M.J., Ruan,S., Bloyet,D. and Mazoyer,B. (2001) On the number of clusters and the fuzziness index for unsupervised FCA application to BOLD fMRI time series. Med. Image Anal., 5, 55-67.
-
(2001)
Med. Image Anal.
, vol.5
, pp. 55-67
-
-
Fadili, M.J.1
Ruan, S.2
Bloyet, D.3
Mazoyer, B.4
-
14
-
-
0037057374
-
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
-
Gasch,A.P. and Eisen,M.B. (2002) Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biol., 3, Research0059.1-0059.22
-
(2002)
Genome Biol.
, vol.3
-
-
Gasch, A.P.1
Eisen, M.B.2
-
15
-
-
0032796478
-
On clustering fMRI time series
-
Goutte,C., Toft,P., Rostrup,E., Nielsen,F. and Hansen,L.K. (1999) On clustering fMRI time series. NeuroImage, 9, 298-310.
-
(1999)
NeuroImage
, vol.9
, pp. 298-310
-
-
Goutte, C.1
Toft, P.2
Rostrup, E.3
Nielsen, F.4
Hansen, L.K.5
-
16
-
-
17444410239
-
Gene expression data mining by fuzzy C-means clustering and fuzzy rule generation
-
Berlin
-
Guthke,R., Hahn,D., Fahnert,B., Kroll,T. and Wölfl,S. (2000): Gene expression data mining by fuzzy C-means clustering and fuzzy rule generation. Proceedings of the 11th International Biotechnology Symposium, Berlin, Vol. 1, pp. 230-232.
-
(2000)
Proceedings of the 11th International Biotechnology Symposium
, vol.1
, pp. 230-232
-
-
Guthke, R.1
Hahn, D.2
Fahnert, B.3
Kroll, T.4
Wölfl, S.5
-
18
-
-
0035852785
-
Dynamic modeling of gene expression data
-
Holter,N.S., Maritan,A., Cieplak,M., Fedoroff,N.V. and Banavar,J.R. (2001) Dynamic modeling of gene expression data, Proc. Natl Acad. Sci. USA, 98, 1693-1698.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1693-1698
-
-
Holter, N.S.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.V.4
Banavar, J.R.5
-
19
-
-
0033642067
-
Discovery of regulatory interactions through perturbation: Inference and experimental design
-
Ideker,T.E., Thorsson,V. and Karp,R.M. (2000) Discovery of regulatory interactions through perturbation: inference and experimental design. Pac. Symp. Biocomput., 5, 305-316.
-
(2000)
Pac. Symp. Biocomput.
, vol.5
, pp. 305-316
-
-
Ideker, T.E.1
Thorsson, V.2
Karp, R.M.3
-
21
-
-
0034831822
-
A novel validity index for determination of the optimal number of clusters
-
E84-D(2)
-
Kim,D.J., Park,Y.W. and Park,D.J. (2001) A novel validity index for determination of the optimal number of clusters. IEICE Trans. Inf. Syst., E84-D(2), 281-285.
-
(2001)
IEICE Trans. Inf. Syst.
, pp. 281-285
-
-
Kim, D.J.1
Park, Y.W.2
Park, D.J.3
-
23
-
-
84898940253
-
From coexpression to coregulation: An approach to inferring transcriptional regulation among gene classes from large-scale expression data
-
Stolla,S.A., Leen,T.K. and Muller,K.R. (eds) MTT Press, Cambridge, MA
-
Mjolsness,E., Mann,T., Castano,R. and Wold,B. (2000) From coexpression to coregulation: an approach to inferring transcriptional regulation among gene classes from large-scale expression data. In Stolla,S.A., Leen,T.K. and Muller,K.R. (eds) Advances in Neural Information Processing Systems 12. MTT Press, Cambridge, MA, pp. 928-934.
-
(2000)
Advances in Neural Information Processing Systems 12
, pp. 928-934
-
-
Mjolsness, E.1
Mann, T.2
Castano, R.3
Wold, B.4
-
24
-
-
0036743232
-
How to avoid spurious cluster validation? A methodological investigation on simulated and fMRI data
-
Möller,U., Ligges,M., Georgiewa,P., Grünling,C., Kaiser,W.A., Witte,H. and Blanz,B. (2002) How to avoid spurious cluster validation? A methodological investigation on simulated and fMRI data. NeuroImage, 17, 431-446.
-
(2002)
NeuroImage
, vol.17
, pp. 431-446
-
-
Möller, U.1
Ligges, M.2
Georgiewa, P.3
Grünling, C.4
Kaiser, W.A.5
Witte, H.6
Blanz, B.7
-
25
-
-
0348108148
-
Validity index for crisp and fuzzy clusters
-
Pakhira,M.K., Bandyopadhyay,S. and Maulik,U. (2004) Validity index for crisp and fuzzy clusters. Pattern Recogn., 37, 487-501.
-
(2004)
Pattern Recogn.
, vol.37
, pp. 487-501
-
-
Pakhira, M.K.1
Bandyopadhyay, S.2
Maulik, U.3
-
26
-
-
0033204902
-
An empirical comparison of four initialization methods for the K-Means algorithm
-
Peña,J.M., Lozano,J.A. and Larrañaga,P. (1999) An empirical comparison of four initialization methods for the K-Means algorithm. Pattern Recogn. Lett., 20, 1027-1040.
-
(1999)
Pattern Recogn. Lett.
, vol.20
, pp. 1027-1040
-
-
Peña, J.M.1
Lozano, J.A.2
Larrañaga, P.3
-
27
-
-
0002892194
-
Determination of number of clusters in K-means clustering and application in colour image segmentation
-
Pal,N.R., De,A.K. and Das,J. (eds), Calcutta, India
-
Ray,S. and Turi,R.H. (1999) Determination of number of clusters in K-means clustering and application in colour image segmentation. In Pal,N.R., De,A.K. and Das,J. (eds), Proceedings of ICAPRDT'99, Calcutta, India, pp. 137-143.
-
(1999)
Proceedings of ICAPRDT'99
, pp. 137-143
-
-
Ray, S.1
Turi, R.H.2
-
28
-
-
17444378513
-
Reverse engineering of the stress response during expression of a recombinant protein
-
Verlag Mainz, Aachen
-
Schmidt-Heck,W., Guthke,R., Toepfer,S., Reischer,H., Dürrschmid,K. and Bayer,K. (2004) Reverse engineering of the stress response during expression of a recombinant protein. Proceedings of the EUNITE 2004 Conference, Verlag Mainz, Aachen, pp. 407-412.
-
(2004)
Proceedings of the EUNITE 2004 Conference
, pp. 407-412
-
-
Schmidt-Heck, W.1
Guthke, R.2
Toepfer, S.3
Reischer, H.4
Dürrschmid, K.5
Bayer, K.6
-
29
-
-
0742321913
-
Mining the biomedical literature in the genomic era: An overview
-
Shatkay,H. and Feldman,R. (2003) Mining the biomedical literature in the genomic era: an overview. J. Comput. Biol., 10 821-855.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 821-855
-
-
Shatkay, H.1
Feldman, R.2
-
30
-
-
0034960264
-
Missing values methods for DNA microarrays
-
Troyanskaya,O., Cantor,M., Sherlock,G., Brown,P., Hastie,T., Tibshirani,R., Botstein,D. and Altman,R.B. (2001) Missing values methods for DNA microarrays. Bioinformatics, 17, 520-525.
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
31
-
-
0002334866
-
Searching for limited connectivity in genetic network models
-
Pasadena, CA
-
van Someren,E.P., Wessels,L.F.A., Reinders,M.J.T. and Backer,E. (2001) Searching for limited connectivity in genetic network models. Proceedings of the International Conference on Systems Biology Pasadena, CA, pp. 222-230.
-
(2001)
Proceedings of the International Conference on Systems Biology
, pp. 222-230
-
-
van Someren, E.P.1
Wessels, L.F.A.2
Reinders, M.J.T.3
Backer, E.4
-
32
-
-
0034748980
-
Regulatory sequence analysis: Application to the interpretation of gene expression
-
Vilo,K. and Kivinen,K. (2001) Regulatory sequence analysis: application to the interpretation of gene expression. Eur. Neuropsychopharmacol., 11, 399-411.
-
(2001)
Eur. Neuropsychopharmacol.
, vol.11
, pp. 399-411
-
-
Vilo, K.1
Kivinen, K.2
-
33
-
-
0034104824
-
Coarse-grained reverse engineering of genetic regulatory networks
-
Wahde,M. and Hertz,J. (2000) Coarse-grained reverse engineering of genetic regulatory networks. Biosystems, 55, 129-136.
-
(2000)
Biosystems
, vol.55
, pp. 129-136
-
-
Wahde, M.1
Hertz, J.2
-
34
-
-
0242624714
-
Clustering of the self-organizing map using a clustering validity index based on inter-cluster and intra-cluster density
-
Wu,S. and Chow,T.W.S. (2004) Clustering of the self-organizing map using a clustering validity index based on inter-cluster and intra-cluster density. Pattern Recogn., 37, 175-188.
-
(2004)
Pattern Recogn.
, vol.37
, pp. 175-188
-
-
Wu, S.1
Chow, T.W.S.2
-
35
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
Yeung,K.Y., Fraley,C., Murua,A., Raftery,A.E. and Ruzzo,W.L. (2001) Model-based clustering and data transformations for gene expression data. Bioinformatics, 17, 977-987.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
-
36
-
-
0037197936
-
Reverse engineering gene networks using singular value decomposition and robust regression
-
Yeung,M.K., Tegner,J. and Collins,J.J. (2002) Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl Acad. Sci., USA, 99, 6163-6168.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6163-6168
-
-
Yeung, M.K.1
Tegner, J.2
Collins, J.J.3
|