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Volumn 11, Issue 1, 2011, Pages

Chasing the hare - Evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST; GENETIC MARKER; HERB; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENETICS; PHYLOGENY; POLYMORPHISM; SPECIES RICHNESS; TAXONOMY;

EID: 83155178505     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-357     Document Type: Article
Times cited : (30)

References (82)
  • 2
    • 0004098021 scopus 로고    scopus 로고
    • http://www.mobot.org/mobot/research/apweb/
    • Angiosperm Phylogeny Website. http://www.mobot.org/mobot/research/apweb/
    • Angiosperm Phylogeny Website
  • 3
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. APG III, Bot J Linn Soc 2009 161 105 121
    • (2009) Bot J Linn Soc , vol.161 , pp. 105-121
    • Apg, I.I.I.1
  • 4
    • 79951569533 scopus 로고    scopus 로고
    • Genome-scale phylogenetics: Inferring the plant tree of life from 18,896 gene trees
    • 10.1093/sysbio/syq072 21186249
    • Genome-scale phylogenetics: Inferring the plant tree of life from 18,896 gene trees. Burleigh JG, Bansal MS, Eulenstein O, Hartmann S, Wehe A, Vision TJ, Syst Biol 2011 60 117 125 10.1093/sysbio/syq072 21186249
    • (2011) Syst Biol , vol.60 , pp. 117-125
    • Burleigh, J.G.1    Bansal, M.S.2    Eulenstein, O.3    Hartmann, S.4    Wehe, A.5    Vision, T.J.6
  • 5
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • Application of Phylogenetic Networks in Evolutionary Studies. Huson DH, Bryant D, Mol Biol Evol 2006 23 2 254 267 16221896 (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 6
    • 77952011861 scopus 로고    scopus 로고
    • Phylogenetic network of Linum species as revealed by non-coding chloroplast DNA sequences
    • 10.1007/s10722-009-9502-7
    • Phylogenetic network of Linum species as revealed by non-coding chloroplast DNA sequences. Fu BY, Allaby RG, Genet Resour Crop Evo 2010 57 667 677 10.1007/s10722-009-9502-7
    • (2010) Genet Resour Crop Evo , vol.57 , pp. 667-677
    • Fu, B.Y.1    Allaby, R.G.2
  • 7
    • 72549096467 scopus 로고    scopus 로고
    • Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    • 10.1186/1741-7007-7-84 19954512
    • Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. Parks M, Cronn R, Liston A, BMC Biol 2009 7 84 10.1186/1741-7007-7-84 19954512
    • (2009) BMC Biol , vol.7 , pp. 84
    • Parks, M.1    Cronn, R.2    Liston, A.3
  • 9
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
    • 10.1073/pnas.0708072104 18048334
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Moore MJ, Bell CD, Soltis PS, Soltis DE, PNAS 2007 104 49 19363 19368 10.1073/pnas.0708072104 18048334
    • (2007) PNAS , vol.104 , Issue.49 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 11
    • 77949494249 scopus 로고    scopus 로고
    • Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
    • 10.1073/pnas.0907801107 20176954
    • Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE, PNAS 2010 107 4623 4628 10.1073/pnas.0907801107 20176954
    • (2010) PNAS , vol.107 , pp. 4623-4628
    • Moore, M.J.1    Soltis, P.S.2    Bell, C.D.3    Burleigh, J.G.4    Soltis, D.E.5
  • 13
    • 39049101019 scopus 로고    scopus 로고
    • Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
    • DOI 10.1186/1471-2148-7-248
    • Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants. Barkman TJ, McNeal JR, Lim S-H, Coat G, Croom HB, Young ND, dePamphilis CW, BMC Evol Biol 2007 7 248 10.1186/1471-2148-7-248 18154671 (Pubitemid 351232894)
    • (2007) BMC Evolutionary Biology , vol.7 , Issue.1 , pp. 248
    • Barkman, T.J.1    McNeal, J.R.2    Lim, S.-H.3    Coat, G.4    Croom, H.B.5    Young, N.D.6    DePamphilis, C.W.7
  • 14
    • 0029910508 scopus 로고    scopus 로고
    • Effects of RNA editing and gene processing on phylogenetic reconstruction
    • Effects of RNA editing and gene processing on phylogenetic reconstruction. Bowe LM, dePamphilis CW, Mol Biol Evol 1996 13 1159 1166 8896368 (Pubitemid 26365658)
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.9 , pp. 1159-1166
    • Bowe, L.M.1    DePamphilis, C.W.2
  • 16
    • 0005927865 scopus 로고
    • Evolution and Function of Plastid DNA: A Review with Special Reference to Nonphotosynthetic Plants
    • Rockville: The American Society of Plant Physiologists Boyer CD, Shannon JC, Hardison RC
    • Evolution and Function of Plastid DNA: A Review With Special Reference to Nonphotosynthetic Plants. dePamphilis CW, Palmer JD, Physiology, biochemistry, and genetics of nongreen plastids Rockville: The American Society of Plant Physiologists, Boyer CD, Shannon JC, Hardison RC, 1989 182 202
    • (1989) Physiology, Biochemistry, and Genetics of Nongreen Plastids , pp. 182-202
    • Depamphilis, C.W.1    Palmer, J.D.2
  • 17
    • 79957927000 scopus 로고    scopus 로고
    • The evolution of the plastid chromosome in land plants: Gene content, gene order, gene function
    • DOI 10.1007/s11103-011-9762-4
    • The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Wicke S, Schneeweiss GM, Mueller KF, dePamphilis CW, Quandt D, Plant Mol Biol 2011 DOI 10.1007/s11103-011-9762-4
    • (2011) Plant Mol Biol
    • Wicke, S.1    Schneeweiss, G.M.2    Mueller, K.F.3    Depamphilis, C.W.4    Quandt, D.5
  • 19
    • 0032229478 scopus 로고    scopus 로고
    • The tortoise and the hare: Choosing between non-coding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group
    • The tortoise and the hare: choosing between non-coding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF, Am J Bot 1998 85 301 1315
    • (1998) Am J Bot , vol.85 , pp. 301-1315
    • Small, R.L.1    Ryburn, J.A.2    Cronn, R.C.3    Seelanan, T.4    Wendel, J.F.5
  • 21
    • 34250767339 scopus 로고    scopus 로고
    • Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The Tortoise and the hare III
    • DOI 10.3732/ajb.94.3.275
    • Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Shaw J, Lickey EB, Schilling EE, Small RL, Am J Bot 2007 94 275 288 10.3732/ajb.94.3.275 21636401 (Pubitemid 46955026)
    • (2007) American Journal of Botany , vol.94 , Issue.3 , pp. 275-288
    • Shaw, J.1    Lickey, E.B.2    Schilling, E.E.3    Small, R.L.4
  • 22
    • 77950191132 scopus 로고    scopus 로고
    • Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
    • 10.1186/1471-2148-10-61 20181251
    • Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. Duarte JM, Wall KP, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW, BMC Evol Biol 2010 10 61 10.1186/1471-2148-10-61 20181251
    • (2010) BMC Evol Biol , vol.10 , pp. 61
    • Duarte, J.M.1    Wall, K.P.2    Edger, P.P.3    Landherr, L.L.4    Ma, H.5    Pires, J.C.6    Leebens-Mack, J.7    Depamphilis, C.W.8
  • 23
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • DOI 10.1016/S1055-7903(03)00208-2
    • Ribosomal ITS sequences and plant phylogenetic inference. Alvarez I, Wendel JF, Mol Phylogenet Evol 2003 29 417 434 10.1016/S1055-7903(03)00208-2 14615184 (Pubitemid 37491888)
    • (2003) Molecular Phylogenetics and Evolution , vol.29 , Issue.3 , pp. 417-434
    • Alvarez, I.1    Wendel, J.F.2
  • 24
    • 0345149784 scopus 로고    scopus 로고
    • Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes
    • DOI 10.1016/j.ympev.2003.08.021
    • Characterization of angiosperm nrDNA polymorphim, paralogy, and pseudogenes. Bailey CD, Carr T, Harris S, Hughes C, Mol Phylogenet Evol 2003 29 435 455 10.1016/j.ympev.2003.08.021 14615185 (Pubitemid 37491889)
    • (2003) Molecular Phylogenetics and Evolution , vol.29 , Issue.3 , pp. 435-455
    • Bailey, C.D.1    Carr, T.G.2    Harris, S.A.3    Hughes, C.E.4
  • 25
    • 27644472372 scopus 로고    scopus 로고
    • Orthologs, paralogs, and evolutionary genomics
    • DOI 10.1146/annurev.genet.39.073003.114725
    • Orthologs, Paralogs, and Evolutionary Genomics. Koonin EV, Annu Rev Genet 2005 39 309 38 10.1146/annurev.genet.39.073003.114725 16285863 (Pubitemid 43011118)
    • (2005) Annual Review of Genetics , vol.39 , pp. 309-338
    • Koonin, E.V.1
  • 26
    • 0033301743 scopus 로고    scopus 로고
    • Molecular phylogenetics of Fouquieriaceae: Evidence from nuclear rDNA ITS studies
    • 10.2307/2656819 10205078
    • Molecular phylogenetics of Fouquieriaceae: evidence from nuclear rDNA ITS studies. Schultheis LM, Baldwin BG, Am J Bot 1999 86 578 589 10.2307/2656819 10205078
    • (1999) Am J Bot , vol.86 , pp. 578-589
    • Schultheis, L.M.1    Baldwin, B.G.2
  • 27
    • 0031406079 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
    • Chloroplast DNA phytogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Sang T, Crawford DJ, Stuessy TF, Am J Bot 1997 84 1120 1136 10.2307/2446155 21708667 (Pubitemid 28106981)
    • (1997) American Journal of Botany , vol.84 , Issue.8 , pp. 1120-1136
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 28
    • 0346758118 scopus 로고    scopus 로고
    • Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine)
    • DOI 10.1046/j.1469-8137.2003.00949.x
    • Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine). Doyle JJ, Doyle JL, Rauscher JT, Brown AHD, New Phytol 2004 161 121 132 (Pubitemid 38047053)
    • (2004) New Phytologist , vol.161 , Issue.1 , pp. 121-132
    • Doyle, J.J.1    Doyle, J.L.2    Rauscher, J.T.3    Brown, A.H.D.4
  • 30
    • 0036743506 scopus 로고    scopus 로고
    • Comparative sequencing in the genus Lycopersicon. Implications for the evolution of fruit size in the domestication of cultivated tomatoes
    • 12242247
    • Comparative sequencing in the genus Lycopersicon. Implications for the evolution of fruit size in the domestication of cultivated tomatoes. Nesbitt TC, Tanksley SD, Genetics 2002 162 365 379 12242247
    • (2002) Genetics , vol.162 , pp. 365-379
    • Nesbitt, T.C.1    Tanksley, S.D.2
  • 31
    • 0035400617 scopus 로고    scopus 로고
    • Phylogenetics and speciation
    • DOI 10.1016/S0169-5347(01)02161-9, PII S0169534701021619
    • Phylogenetics and speciation. Barraclough T, Nee S, Trends Ecol Evol 2001 16 391 399 10.1016/S0169-5347(01)02161-9 11403872 (Pubitemid 32525780)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.7 , pp. 391-399
    • Barraclough, T.G.1    Nee, S.2
  • 32
    • 0031081404 scopus 로고    scopus 로고
    • Nuclear DNA-based markers for plant evolutionary biology
    • Nuclear DNA-based markers for plant evolutionary biology. Strand AE, Leebens-Mack J, Milligan BG, Mol Ecol 1997 6 113 118 10.1046/j.1365-294X.1997. 00153.x 9061938 (Pubitemid 27114984)
    • (1997) Molecular Ecology , vol.6 , Issue.2 , pp. 113-118
    • Strand, A.E.1    Leebens-Mack, J.2    Milligan, B.G.3
  • 33
    • 0032840917 scopus 로고    scopus 로고
    • Reconstructing hybrid speciation using sequences of low copy nuclear genes: Hybrid origins of five Paeonia species based on Adh gene phylogenies
    • Reconstructing hybrid speciation using sequences of Low Copy Nuclear Genes: hybrid origins of five Paeonia species based on Adh gene phylogenies. Sang T, Zhang D, Syst Bot 1999 24 148 163 10.2307/2419546 (Pubitemid 29375488)
    • (1999) Systematic Botany , vol.24 , Issue.2 , pp. 148-163
    • Sang, T.1    Zhang, D.2
  • 34
    • 0033209648 scopus 로고    scopus 로고
    • Potential Phylogenetic Utility of the Low-Copy Nuclear Gene pistillata in Dicotyledonous Plants: Comparison to nrDNA ITS and trnL Intron in Sphaerocardamum and Other Brassicaceae
    • DOI 10.1006/mpev.1999.0627, PII S1055790399906279
    • Potential Phylogenetic Utility of the Low-Copy Nuclear Gene pistillata in Dicotyledonous Plants: Comparison to nrDNA ITS and trnL Intron in Sphaerocardamum and Other Brassicaceae. Bailey CD, Doyle JJ, Mol Phylogenet Evol 1999 1 20 30 (Pubitemid 129499316)
    • (1999) Molecular Phylogenetics and Evolution , vol.13 , Issue.1 , pp. 20-30
    • Bailey, C.D.1    Doyle, J.J.2
  • 35
    • 0034990274 scopus 로고    scopus 로고
    • Phylogenetic utility of the glycerol-3-phosphate acyltransferase gene: Evolution and implications in Paeonia (Paeoniaceae)
    • DOI 10.1006/mpev.2001.0931
    • Phylogenetic utility of the glycerol-3-phosphate acyltransferase gene: Evolution and implications in Paeonia (Paeoniaceae). Tank D, Sang T, Mol Phylogenet Evol 2001 19 421 429 10.1006/mpev.2001.0931 11399150 (Pubitemid 32566645)
    • (2001) Molecular Phylogenetics and Evolution , vol.19 , Issue.3 , pp. 421-429
    • Tank, D.C.1    Sang, T.2
  • 37
    • 50449109352 scopus 로고    scopus 로고
    • Allopolyploid speciation in Persicaria (Polygonaceae): Insights from a low-copy nuclear region
    • 10.1073/pnas.0805141105 18711129
    • Allopolyploid speciation in Persicaria (Polygonaceae): Insights from a low-copy nuclear region. Kim S, Sultan SE, Donoghue MJ, PNAS 2008 105 12370 12375 10.1073/pnas.0805141105 18711129
    • (2008) PNAS , vol.105 , pp. 12370-12375
    • Kim, S.1    Sultan, S.E.2    Donoghue, M.J.3
  • 38
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • DOI 10.1080/10409230290771474
    • Utility of low-copy nuclear gene sequences in plant phylogenetics. Sang T, Crit Rev Biochem Mol 2002 37 121 147 10.1080/10409230290771474 (Pubitemid 34779349)
    • (2002) Critical Reviews in Biochemistry and Molecular Biology , vol.37 , Issue.3 , pp. 121-147
    • Sang, T.1
  • 40
    • 0035984048 scopus 로고    scopus 로고
    • Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants
    • DOI 10.1105/tpc.010479
    • Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Fulton TM, Van der Hoeven R, Eannetta NT, Tanksley SD, Plant Cell 2002 14 1457 1467 10.1105/tpc.010479 12119367 (Pubitemid 34817136)
    • (2002) Plant Cell , vol.14 , Issue.7 , pp. 1457-1467
    • Fulton, T.M.1    Van Der Hoeven, R.2    Eannetta, N.T.3    Tanksley, S.D.4
  • 41
    • 33751344142 scopus 로고    scopus 로고
    • Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: A test case in the euasterid plant clade
    • DOI 10.1534/genetics.106.062455
    • Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: A test case in the Euasterid plant clade. Wu F, Mueller LA, Crouzillat D, Petiard V, Tanksley SD, Genetics 2006 174 1407 1420 10.1534/genetics.106.062455 16951058 (Pubitemid 44808310)
    • (2006) Genetics , vol.174 , Issue.3 , pp. 1407-1420
    • Wu, F.1    Mueller, L.A.2    Crouzillat, D.3    Petiard, V.4    Tanksley, S.D.5
  • 42
    • 33644994200 scopus 로고    scopus 로고
    • Generating single copy nuclear gene data for a recent adaptive radiation
    • 10.1016/j.ympev.2005.10.010 16314114
    • Generating single copy nuclear gene data for a recent adaptive radiation. Whittall JB, Medina-Marino A, Zimmer EA, Hodges SA, Mol Phylogenet Evol 2006 39 124 134 10.1016/j.ympev.2005.10.010 16314114
    • (2006) Mol Phylogenet Evol , vol.39 , pp. 124-134
    • Whittall, J.B.1    Medina-Marino, A.2    Zimmer, E.A.3    Hodges, S.A.4
  • 43
    • 33644499450 scopus 로고    scopus 로고
    • Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
    • 10.1073/pnas.0507782103 16467140
    • Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Chapman BA, Bowers JE, Feltus FA, Paterson AH, Proc Natl Acad Sci USA 2006 103 8 2730 2735 10.1073/pnas.0507782103 16467140
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.8 , pp. 2730-2735
    • Chapman, B.A.1    Bowers, J.E.2    Feltus, F.A.3    Paterson, A.H.4
  • 44
    • 43149094661 scopus 로고    scopus 로고
    • Selecting Single-Copy Nuclear Genes for Plant Phylogenetics: A Preliminary Analysis for the Senecioneae (Asteraceae)
    • 10.1007/s00239-008-9083-7 18305978
    • Selecting Single-Copy Nuclear Genes for Plant Phylogenetics: A Preliminary Analysis for the Senecioneae (Asteraceae). Alvarez I, Costa A, Feliner GN, J Mol Evol 2008 66 276 291 10.1007/s00239-008-9083-7 18305978
    • (2008) J Mol Evol , vol.66 , pp. 276-291
    • Alvarez, I.1    Costa, A.2    Feliner, G.N.3
  • 45
    • 41849099636 scopus 로고    scopus 로고
    • Genomic outposts serve the phylogenomic pioneers: Designing novel nuclear markers for genomic DNA extractions of lepidoptera
    • DOI 10.1080/10635150802033006, PII 792022088
    • Genomic Outposts Serve the Phylogenomic Pioneers: Designing Novel Nuclear Markers for Genomic DNA Extractions of Lepidoptera. Wahlberg N, West Wheat C, Syst Biol 2008 57 2 231 242 10.1080/10635150802033006 18398768 (Pubitemid 351502943)
    • (2008) Systematic Biology , vol.57 , Issue.2 , pp. 231-242
    • Wahlberg, N.1    Wheat, C.W.2
  • 46
    • 67650755986 scopus 로고    scopus 로고
    • Single-copy nuclear genes resolve the phylogeny of the holometabolous insects
    • 10.1186/1741-7007-7-34 19552814
    • Single-copy nuclear genes resolve the phylogeny of the holometabolous insects. Wiegmann B, Trautwein M, Kim J, Cassel B, Bertone M, Winterton S, Yeates D, BMC Biol 2009 7 34 10.1186/1741-7007-7-34 19552814
    • (2009) BMC Biol , vol.7 , pp. 34
    • Wiegmann, B.1    Trautwein, M.2    Kim, J.3    Cassel, B.4    Bertone, M.5    Winterton, S.6    Yeates, D.7
  • 49
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • An efficient algorithm for large-scale detection of protein families. Enright AJ, Van Dongen S, Ouzounis CA, Nucleic Acids Res 2002 30 7 1575 1584 10.1093/nar/30.7.1575 11917018 (Pubitemid 34679732)
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 50
    • 33646594138 scopus 로고    scopus 로고
    • From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction
    • DOI 10.1098/rstb.2005.1735
    • Review. From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction. Hughes CE, Eastwood RJ, Donovan Bailey C, Phil Trans R Soc Lond B 2006 361 211 225 10.1098/rstb.2005.1735 (Pubitemid 44858953)
    • (2006) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.361 , Issue.1465 , pp. 211-225
    • Hughes, C.E.1    Eastwood, R.J.2    Bailey, C.D.3
  • 51
    • 84855441516 scopus 로고    scopus 로고
    • From the Andean cradle in Peru to the Trans-Volcanic Mexican Belt: The extraordinary journey of the geophytic Peperomia subgenus Tildenia (Piperaceae)
    • doi:10.1111/j.1365-2699.2011.02586.x
    • From the Andean cradle in Peru to the Trans-Volcanic Mexican Belt: the extraordinary journey of the geophytic Peperomia subgenus Tildenia (Piperaceae). Symmank L, Samain MS, Smith JF, Pino G, Stoll A, Goetghebeur P, Neinhuis C, Wanke S, J Biogeography doi:10.1111/j.1365-2699.2011.02586.x
    • J Biogeography
    • Symmank, L.1    Samain, M.S.2    Smith, J.F.3    Pino, G.4    Stoll, A.5    Goetghebeur, P.6    Neinhuis, C.7    Wanke, S.8
  • 52
    • 31644433398 scopus 로고    scopus 로고
    • Phylogeny of the genus Peperomia (Piperaceae) inferred from the trnK/matK region (cpDNA)
    • DOI 10.1055/s-2005-873060
    • Phylogeny of the genus Peperomia (Piperaceae) inferred from the trnK/matK region (cpDNA). Wanke S, Samain MS, Vanderschaeve L, Mathieu G, Goetghebeur P, Neinhuis C, Plant Biol 2006 8 93 102 10.1055/s-2005-873060 16435273 (Pubitemid 43170442)
    • (2006) Plant Biology , vol.8 , Issue.1 , pp. 93-102
    • Wanke, S.1    Samain, M.-S.2    Vanderschaeve, L.3    Mathieu, G.4    Goetghebeur, P.5    Neinhuis, C.6
  • 53
    • 59649096539 scopus 로고    scopus 로고
    • Is morphology telling the truth about the evolution of the species rich genus Peperomia (Piperaceae)?
    • 10.1007/s00606-008-0113-0
    • Is morphology telling the truth about the evolution of the species rich genus Peperomia (Piperaceae)? Samain MS, Vanderschaeve L, Chaerle P, Goetghebeur P, Neinhuis C, Wanke S, Plant Sys Evol 2009 278 1 21 10.1007/s00606-008-0113-0
    • (2009) Plant Sys Evol , vol.278 , pp. 1-21
    • Samain, M.S.1    Vanderschaeve, L.2    Chaerle, P.3    Goetghebeur, P.4    Neinhuis, C.5    Wanke, S.6
  • 54
    • 0141586814 scopus 로고    scopus 로고
    • Biogeography and speciation of the genus Peperomia Ruiz and Pavon in Eastern Polynesia
    • University of Dublin, Trinity College
    • Biogeography and speciation of the genus Peperomia Ruiz and Pavon in Eastern Polynesia. Bradley U, PhD thesis University of Dublin, Trinity College 2002
    • (2002) PhD Thesis
    • Bradley, U.1
  • 56
    • 79961135239 scopus 로고    scopus 로고
    • The geophytic Peperomia subgenus Tildenia (Piperaceae) in the Andes with the description of new species in a phylogenetic framework
    • The geophytic Peperomia subgenus Tildenia (Piperaceae) in the Andes with the description of new species in a phylogenetic framework. Samain MS, Mathieu G, Pino G, Symmank L, Cieza N, Neinhuis C, Goetghebeur P, Wanke S, Plant Ecol Evol 2011 144 2 1 29
    • (2011) Plant Ecol Evol , vol.144 , Issue.2 , pp. 1-29
    • Samain, M.S.1    Mathieu, G.2    Pino, G.3    Symmank, L.4    Cieza, N.5    Neinhuis, C.6    Goetghebeur, P.7    Wanke, S.8
  • 57
    • 0037250125 scopus 로고    scopus 로고
    • Alanine aminotransferase homologs catalyze the glutamate:Glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis
    • DOI 10.1104/pp.011460
    • Alanine aminotransferase homologs catalyze the glutamate:glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis. Liepman AH, Olsen LJ, Plant Physiol 2003 131 215 227 10.1104/pp.011460 12529529 (Pubitemid 36141219)
    • (2003) Plant Physiology , vol.131 , Issue.1 , pp. 215-227
    • Liepman, A.H.1    Olsen, L.J.2
  • 58
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • 10331256
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Shimodaira H, Hasegawa M, Mol Biol Evol 1999 16 114 1116 10331256
    • (1999) Mol Biol Evol , vol.16 , pp. 114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 59
    • 84959758123 scopus 로고
    • Congruence between morphometric and allozyme data for Menidia species: A reappraisal
    • 10.2307/2412663
    • Congruence between morphometric and allozyme data for Menidia species: a reappraisal. Colless DH, Syst Zool 1980 29 288 299 10.2307/2412663
    • (1980) Syst Zool , vol.29 , pp. 288-299
    • Colless, D.H.1
  • 60
    • 23944471074 scopus 로고    scopus 로고
    • Molecular phylogenetics of the giant genus Croton and tribe Crotoneae (Euphorbiaceae sensu stricto) using ITS and trnL-trnF DNA sequence data
    • Molecular phylogenetics of the giant genus Croton and tribe Crotoneae (Euphorbiaceae sensu stricto) using ITS and trnL-trnF DNA sequence data. Berry PE, Hipp AL, Wurdack KJ, Van Ee B, Riina R, Am J Bot 2005 92 1520 1534 10.3732/ajb.92.9.1520 21646170 (Pubitemid 41209489)
    • (2005) American Journal of Botany , vol.92 , Issue.9 , pp. 1520-1534
    • Berry, P.E.1    Hipp, A.L.2    Wurdack, K.J.3    Van Ee, B.4    Riina, R.5
  • 62
    • 56549101328 scopus 로고    scopus 로고
    • The phylogenetic utility of chloroplast and nuclear DNA markers and the phylogeny of the Rubiaceae tribe Spermacoceae
    • 10.1016/j.ympev.2008.09.025 18950720
    • The phylogenetic utility of chloroplast and nuclear DNA markers and the phylogeny of the Rubiaceae tribe Spermacoceae. Kårehed J, Groeninckx I, Dessein S, Motley TJ, Bremer B, Mol Phylogenet Evol 2008 49 843 866 10.1016/j.ympev.2008.09.025 18950720
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 843-866
    • Kårehed, J.1    Groeninckx, I.2    Dessein, S.3    Motley, T.J.4    Bremer, B.5
  • 63
    • 0036272828 scopus 로고    scopus 로고
    • Phylogenetics and evolution of the Macaronesian clade of Crassulaceae inferred from nuclear and chloroplast sequence data
    • Phylogenetics and Evolution of the Macaronesian Clade of Crassulaceae Inferred from Nuclear and Chloroplast Sequence Data. Mort ME, Soltis DE, Soltis PS, Francisco-Ortega J, Santos-Guerra A, Syst Bot 2002 27 2 271 288 (Pubitemid 34617037)
    • (2002) Systematic Botany , vol.27 , Issue.2 , pp. 271-288
    • Mort, M.E.1    Soltis, D.E.2    Soltis, P.S.3    Francisco-Ortega, J.4    Santos-Guerra, A.5
  • 66
    • 79957595723 scopus 로고    scopus 로고
    • A mystery unveiled
    • 10.1186/gb-2011-12-5-113 21635712
    • A mystery unveiled. Van de Peer Y, Genome Biol 2011 12 113 10.1186/gb-2011-12-5-113 21635712
    • (2011) Genome Biol , vol.12 , pp. 113
    • Van De Peer, Y.1
  • 67
    • 77955913045 scopus 로고    scopus 로고
    • PlantTribes. http://fgp.bio.psu.edu/tribedb/10-genomes/index.pl
    • PlantTribes
  • 68
    • 80052708667 scopus 로고    scopus 로고
    • Restless 5S: The re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants
    • 10.1016/j.ympev.2011.06.023 21757016
    • Restless 5S: The re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants. Wicke S, Costa A, Mũoz J, Quandt D, Mol Phylogenet Evol 2011 61 321 332 10.1016/j.ympev.2011.06.023 21757016
    • (2011) Mol Phylogenet Evol , vol.61 , pp. 321-332
    • Wicke, S.1    Costa, A.2    Mũoz, J.3    Quandt, D.4
  • 69
    • 0035400648 scopus 로고    scopus 로고
    • Gene trees and species trees are not the same
    • DOI 10.1016/S0169-5347(01)02203-0, PII S0169534701022030
    • Gene trees and species trees are not the same. Nichols R, Trends Ecol Evol 2001 16 358 64 10.1016/S0169-5347(01)02203-0 11403868 (Pubitemid 32525776)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.7 , pp. 358-364
    • Nichols, R.1
  • 74
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as Characters in Sequence-Based Phylogenetic Analyses
    • 12118412
    • Gaps as Characters in Sequence-Based Phylogenetic Analyses. Simmons MP, Ochoterena H, Syst Biol 2000 49 2 369 381 12118412
    • (2000) Syst Biol , vol.49 , Issue.2 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 75
    • 22944482184 scopus 로고    scopus 로고
    • SeqState: Primer design and sequence statistics for phylogenetic DNA datasets
    • DOI 10.2165/00822942-200504010-00008
    • SeqState: Primer design and sequence statistics for phylogenetic DNA datasets. Müller KF, Appl Bioinformatics 2005 4 65 69 10.2165/00822942- 200504010-00008 16000015 (Pubitemid 41043903)
    • (2005) Applied Bioinformatics , vol.4 , Issue.1 , pp. 65-69
    • Muller, K.1
  • 76
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • DOI 10.1093/molbev/msn083
    • jModelTest: Phylogenetic Model Averaging. Posada D, Mol Biol Evol 2008 25 1253 1256 10.1093/molbev/msn083 18397919 (Pubitemid 351882013)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 77
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • MrBayes. 3: Bayesian phylogenetic inference under mixed models. Ronquist F, Huelsenbeck JP, Bioinformatics 2003 19 1572 1574 10.1093/bioinformatics/ btg180 12912839 (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 78
    • 77953325276 scopus 로고    scopus 로고
    • http://tree.bio.ed.ac.uk/software/tracer version 1.5
    • Tracer. Rambaut A, Drummond A, 2009 http://tree.bio.ed.ac.uk/software/ tracer version 1.5
    • (2009) Tracer
    • Rambaut, A.1    Drummond, A.2
  • 79
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • DOI 10.1093/bioinformatics/btl446
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Stamatakis A, Bioinformatics 2006 22 21 2688 2690 10.1093/bioinformatics/btl446 16928733 (Pubitemid 44642609)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 80
    • 11144358140 scopus 로고    scopus 로고
    • PRAP - Computation of Bremer support for large data sets
    • DOI 10.1016/j.ympev.2003.12.006
    • PRAP-computation of Bremer support for large data sets. Müller KF, Mol Phylogenet Evol 2004 31 780 782 10.1016/j.ympev.2003.12.006 15062810 (Pubitemid 38504464)
    • (2004) Molecular Phylogenetics and Evolution , vol.31 , Issue.2 , pp. 780-782
    • Muller, K.1
  • 82
    • 75149150388 scopus 로고    scopus 로고
    • TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
    • 10.1186/1471-2105-11-7 20051126
    • TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses. Stöver BC, Müller KF, BMC Bioinformatics 2010 11 7 10.1186/1471-2105-11-7 20051126
    • (2010) BMC Bioinformatics , vol.11 , pp. 7
    • Stöver, B.C.1    Müller, K.F.2


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