메뉴 건너뛰기




Volumn 29, Issue 3, 2003, Pages 435-455

Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes

Author keywords

Bootstrap hypothesis testing; Internal transcribed spacer; nrDNA; Phylogeny; Pseudogene

Indexed keywords

MAGNOLIOPHYTA;

EID: 0345149784     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2003.08.021     Document Type: Article
Times cited : (369)

References (79)
  • 1
    • 0031252212 scopus 로고    scopus 로고
    • On the origins of the tetraploid Bromus species: Insights from ITS sequences of nrDNA
    • Ainouche, M.L., Bayer, R.J., 1997. On the origins of the tetraploid Bromus species: insights from ITS sequences of nrDNA. Genome 40, 730-743.
    • (1997) Genome , vol.40 , pp. 730-743
    • Ainouche, M.L.1    Bayer, R.J.2
  • 2
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Álvarez, I., Wendel, J.F., 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29, 417-434.
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 417-434
    • Álvarez, I.1    Wendel, J.F.2
  • 3
    • 0003016687 scopus 로고
    • Concerted evolution in multigene families
    • Nei, M., Koehn, R. (Eds.), Sinauer, Sunderland, MA
    • Arnheim, N., 1983. Concerted evolution in multigene families. In: Nei, M., Koehn, R. (Eds.), Evolution of Genes and Proteins. Sinauer, Sunderland, MA, pp. 38-61.
    • (1983) Evolution of Genes and Proteins , pp. 38-61
    • Arnheim, N.1
  • 4
    • 0001141436 scopus 로고
    • Gene-trees and organismal histories: A phylogenetic approach to population biology
    • Avise, J.C., 1989. Gene-trees and organismal histories: a phylogenetic approach to population biology. Evolution 43, 1192-1208.
    • (1989) Evolution , vol.43 , pp. 1192-1208
    • Avise, J.C.1
  • 5
    • 85030947455 scopus 로고    scopus 로고
    • Using RAPDs to identify DNA sequence loci for species level phylogeny reconstruction: An example from Leucaena (Fabaceae)
    • in press
    • Bailey, C.D., Hughes, C.E., Harris, S.A., in press. Using RAPDs to identify DNA sequence loci for species level phylogeny reconstruction: an example from Leucaena (Fabaceae). Syst. Bot.
    • Syst. Bot.
    • Bailey, C.D.1    Hughes, C.E.2    Harris, S.A.3
  • 6
    • 0034079633 scopus 로고    scopus 로고
    • Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps16 intron sequence data
    • Baker, W.J., Hedderson, T.A., Dransfield, J., 2000. Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps16 intron sequence data. Mol. Phylogenet. Evol. 14, 195-217.
    • (2000) Mol. Phylogenet. Evol. , vol.14 , pp. 195-217
    • Baker, W.J.1    Hedderson, T.A.2    Dransfield, J.3
  • 7
    • 0026822377 scopus 로고
    • Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae
    • Baldwin, B.G., 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Mol. Phylogenet. Evol. 1, 3-16.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 3-16
    • Baldwin, B.G.1
  • 9
    • 0029864030 scopus 로고    scopus 로고
    • Zea ribosomal repeat evolution and substitution patterns
    • Buckler, E.S.I., Holtsford, T.P., 1996. Zea ribosomal repeat evolution and substitution patterns. Mol. Biol. Evol. 13, 623-632.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 623-632
    • Buckler, E.S.I.1    Holtsford, T.P.2
  • 10
    • 0031035491 scopus 로고    scopus 로고
    • The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
    • Buckler, E.S.I., Ippolito, A., Holtsford, T.P., 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145, 821-832.
    • (1997) Genetics , vol.145 , pp. 821-832
    • Buckler, E.S.I.1    Ippolito, A.2    Holtsford, T.P.3
  • 11
    • 0031029173 scopus 로고    scopus 로고
    • Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae)
    • Campbell, C.S., Wojciechowski, M.F., Baldwin, B.G., Alice, L.A., Donoghue, M.J., 1997. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol. Biol. Evol. 14, 81-90.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 81-90
    • Campbell, C.S.1    Wojciechowski, M.F.2    Baldwin, B.G.3    Alice, L.A.4    Donoghue, M.J.5
  • 13
    • 0035078391 scopus 로고    scopus 로고
    • The expression of pseudogene cyclin D2 mRNA in the human ovary may be a novel marker for decreased ovarian function associated with the aging process
    • Choi, D., Yoon, S., Lee, E., Hwang, S., Yoon, B., Lee, J., 2001. The expression of pseudogene cyclin D2 mRNA in the human ovary may be a novel marker for decreased ovarian function associated with the aging process. J. Assist. Reprod. Gen. 18, 110-113.
    • (2001) J. Assist. Reprod. Gen. , vol.18 , pp. 110-113
    • Choi, D.1    Yoon, S.2    Lee, E.3    Hwang, S.4    Yoon, B.5    Lee, J.6
  • 14
    • 0032099263 scopus 로고    scopus 로고
    • Data decisiveness, data quality and incongruence in phylogenetic analysis: An example from the monocotyledons using mitochondrial atpA sequences
    • Davis, J., Simmons, M.P., Stevenson, D.W., Wendel, J.F., 1998. Data decisiveness, data quality and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atpA sequences. Syst. Biol. 47, 282-310.
    • (1998) Syst. Biol. , vol.47 , pp. 282-310
    • Davis, J.1    Simmons, M.P.2    Stevenson, D.W.3    Wendel, J.F.4
  • 15
    • 0034702467 scopus 로고    scopus 로고
    • High intraindividual variation in internal transcribed spacer sequences in Aeschynanthus (Gesneriaceae) implications for phylogenetics
    • Denduangboripant, J., Cronk, Q.C.B., 2000. High intraindividual variation in internal transcribed spacer sequences in Aeschynanthus (Gesneriaceae) implications for phylogenetics. Proc. R. Soc. Lond. B 267, 1407-1415.
    • (2000) Proc. R. Soc. Lond. B , vol.267 , pp. 1407-1415
    • Denduangboripant, J.1    Cronk, Q.C.B.2
  • 16
    • 0028258693 scopus 로고
    • Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach
    • Dopazo, J., 1994. Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach. J. Mol. Evol. 38, 300-304.
    • (1994) J. Mol. Evol. , vol.38 , pp. 300-304
    • Dopazo, J.1
  • 17
    • 0000989175 scopus 로고
    • Gene trees and species trees: Molecular systematics as one-character taxonomy
    • Doyle, J.J., 1992. Gene trees and species trees: molecular systematics as one-character taxonomy. Syst. Bot. 17, 144-163.
    • (1992) Syst. Bot. , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 18
    • 0002500495 scopus 로고    scopus 로고
    • Homology in molecular phylogenetics: A parsimony perspective
    • Soltis, D.E., Soltis, P.S., Doyle, J.J. (Eds.), Kluwer Academic, Boston, MA
    • Doyle, J.J., Davis, J.I., 1998. Homology in molecular phylogenetics: a parsimony perspective. In: Soltis, D.E., Soltis, P.S., Doyle, J.J. (Eds.), Molecular Systematics of Plants II: DNA Sequencing. Kluwer Academic, Boston, MA, pp. 101-131.
    • (1998) Molecular Systematics of Plants II: DNA Sequencing , pp. 101-131
    • Doyle, J.J.1    Davis, J.I.2
  • 19
    • 84971086450 scopus 로고
    • Analysis of a polyploid complex in Glycine with chloroplast and nuclear DNA
    • Doyle, J.J., Doyle, J.L., Brown, A.H.D., 1990. Analysis of a polyploid complex in Glycine with chloroplast and nuclear DNA. Aust. Syst. Bot. 3, 125-136.
    • (1990) Aust. Syst. Bot. , vol.3 , pp. 125-136
    • Doyle, J.J.1    Doyle, J.L.2    Brown, A.H.D.3
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 84959798530 scopus 로고
    • Cases in which parsimony and compatibility methods will be positively mis-leading
    • Felsenstein, J., 1978. Cases in which parsimony and compatibility methods will be positively mis-leading. Syst. Zool. 27, 401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 22
    • 0003437299 scopus 로고
    • Distributed by the author. Department of Genetics, University of Washington, Seattle, WA
    • Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, WA.
    • (1993) PHYLIP (Phylogeny Inference Package) Version 3.5c
    • Felsenstein, J.1
  • 23
    • 0033178843 scopus 로고    scopus 로고
    • Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artificial hybrids of Armeria (Plumbaginaceae)
    • Fuertes-Aguilar, J., Rosello, J.A., Feliner, G.N., 1999. Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artificial hybrids of Armeria (Plumbaginaceae). Mol. Ecol. 8, 1341-1346.
    • (1999) Mol. Ecol. , vol.8 , pp. 1341-1346
    • Fuertes-Aguilar, J.1    Rosello, J.A.2    Feliner, G.N.3
  • 26
    • 0033808092 scopus 로고    scopus 로고
    • Phylogenetic relationships and genetic diversity among members of the Festuca-Lolium complex (Poaceae) based on ITS sequence data
    • Gaut, B.S., Tredway, L.P., Kubik, C., Gaut, R.L., Meyer, W., 2000. Phylogenetic relationships and genetic diversity among members of the Festuca-Lolium complex (Poaceae) based on ITS sequence data. Plant Syst. Evol. 224, 33-53.
    • (2000) Plant Syst. Evol. , vol.224 , pp. 33-53
    • Gaut, B.S.1    Tredway, L.P.2    Kubik, C.3    Gaut, R.L.4    Meyer, W.5
  • 27
    • 0033302746 scopus 로고    scopus 로고
    • Internal transcribed spacer region evolution in Larix and Pseudotsuga (Pinaceae)
    • Gernandt, D.S., Liston, A., 1999. Internal transcribed spacer region evolution in Larix and Pseudotsuga (Pinaceae). Am. J. Bot. 86, 711-723.
    • (1999) Am. J. Bot. , vol.86 , pp. 711-723
    • Gernandt, D.S.1    Liston, A.2
  • 29
    • 0000365320 scopus 로고
    • Fitting the gene lineage into its species lineage: A parsimony strategy illustrated by cladograms constructed from globin sequences
    • Goodman, J., Czelusniak, J., Moore, G.W., Romero-Herrera, A.E., Matsuda, G., 1979. Fitting the gene lineage into its species lineage: a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst. Zool. 28, 132-168.
    • (1979) Syst. Zool. , vol.28 , pp. 132-168
    • Goodman, J.1    Czelusniak, J.2    Moore, G.W.3    Romero-Herrera, A.E.4    Matsuda, G.5
  • 31
    • 0025815687 scopus 로고
    • Two guidelines for bootstrap hypothesis testing
    • Hall, P., Wilson, S.R., 1991. Two guidelines for bootstrap hypothesis testing. Biometrics 47, 757-762.
    • (1991) Biometrics , vol.47 , pp. 757-762
    • Hall, P.1    Wilson, S.R.2
  • 32
    • 0002780775 scopus 로고
    • Ribosomal RNA as a phylogenetic tool in plant systematics
    • Soltis, P.S., Soltis, D.E., Doyle, J.J. (Eds.), Chapman & Hall, New York, NY
    • Hamby, R.K., Zimmer, E.A., 1992. Ribosomal RNA as a phylogenetic tool in plant systematics. In: Soltis, P.S., Soltis, D.E., Doyle, J.J. (Eds.), Molecular Systematics of Plants. Chapman & Hall, New York, NY, pp. 50-91.
    • (1992) Molecular Systematics of Plants , pp. 50-91
    • Hamby, R.K.1    Zimmer, E.A.2
  • 33
    • 0034946250 scopus 로고    scopus 로고
    • Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus
    • Hartmann, S., Nason, J.D., Bhattacharya, D., 2001. Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus. J. Mol. Evol. 53, 124-134.
    • (2001) J. Mol. Evol. , vol.53 , pp. 124-134
    • Hartmann, S.1    Nason, J.D.2    Bhattacharya, D.3
  • 34
    • 0002888491 scopus 로고    scopus 로고
    • Ribosomal DNA sequences and angiosperm systematics
    • Hollingsworth, P.M., Bateman, R.M., Gornall, R.J. (Eds.), Taylor & Francis, London
    • Hershkovitz, M.A., Zimmer, E.A., Hahn, W.J., 1999. Ribosomal DNA sequences and angiosperm systematics. In: Hollingsworth, P.M., Bateman, R.M., Gornall, R.J. (Eds.), Molecular Systematics and Plant Evolution. Taylor & Francis, London, pp. 268-326.
    • (1999) Molecular Systematics and Plant Evolution , pp. 268-326
    • Hershkovitz, M.A.1    Zimmer, E.A.2    Hahn, W.J.3
  • 36
    • 0036065546 scopus 로고    scopus 로고
    • Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: Insights into polyploid origins and nrDNA polymorphism
    • Hughes, C.E., Bailey, C.D., Harris, S.A., 2002. Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: insights into polyploid origins and nrDNA polymorphism. Am. J. Bot. 89, 1057-1073.
    • (2002) Am. J. Bot. , vol.89 , pp. 1057-1073
    • Hughes, C.E.1    Bailey, C.D.2    Harris, S.A.3
  • 37
    • 85030935137 scopus 로고    scopus 로고
    • Jermiin, L.S., 1996. K2WuLi v. 1.0. Available from http://jcsmr.anu.edu. au/dicb/humgen/lars/k2wulisub.htm.
    • (1996) K2WuLi v. 1.0
    • Jermiin, L.S.1
  • 38
    • 0032042486 scopus 로고    scopus 로고
    • Molecular evolution of the internal transcribed spacers (ITS 1 and ITS 2) and phylogenetic relationships among species of the family Cucurbitaceae
    • Jobst, J., King, K., Hemleben, V., 1998. Molecular evolution of the internal transcribed spacers (ITS 1 and ITS 2) and phylogenetic relationships among species of the family Cucurbitaceae. Mol. Phylogenet. Evol., 9.
    • (1998) Mol. Phylogenet. Evol. , pp. 9
    • Jobst, J.1    King, K.2    Hemleben, V.3
  • 40
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in the Hominoidea
    • Kishino, H., Hasegawa, M., 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in the Hominoidea. J. Mol. Evol. 29, 170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 41
    • 0034493012 scopus 로고    scopus 로고
    • Nuclear ribosomal ITS sequences and phylogeny in East Asian Aconitum subgenus Aconitum (Ranunculaceae), with special reference to extensive polymorphism in individual plants
    • Kita, Y., Ito, M., 2000. Nuclear ribosomal ITS sequences and phylogeny in East Asian Aconitum subgenus Aconitum (Ranunculaceae), with special reference to extensive polymorphism in individual plants. Plant Syst. Evol. 225, 1-13.
    • (2000) Plant Syst. Evol. , vol.225 , pp. 1-13
    • Kita, Y.1    Ito, M.2
  • 42
    • 0033384026 scopus 로고    scopus 로고
    • Phylogenetic relationships within Lithophragma (Saxifragaceae) hybridization, allopolyploidy and ovary diversification
    • Kuzoff, R.K., Soltis, D.E., Hufford, L., Soltis, P.S., 1999. Phylogenetic relationships within Lithophragma (Saxifragaceae) hybridization, allopolyploidy and ovary diversification. Syst. Bot. 24, 598-615.
    • (1999) Syst. Bot. , vol.24 , pp. 598-615
    • Kuzoff, R.K.1    Soltis, D.E.2    Hufford, L.3    Soltis, P.S.4
  • 43
    • 0026338477 scopus 로고
    • The longest 18S ribosomal RNA ever known: Nucleotide sequence and presumed secondary structure of the 18S rRNA of the pea aphid, Acyrthosiphon pisum
    • Kwon, O.Y., Ogino, K., Ishikawa, H., 1991. The longest 18S ribosomal RNA ever known: nucleotide sequence and presumed secondary structure of the 18S rRNA of the pea aphid, Acyrthosiphon pisum. Eur. J. Biochem. 202, 827-833.
    • (1991) Eur. J. Biochem. , vol.202 , pp. 827-833
    • Kwon, O.Y.1    Ogino, K.2    Ishikawa, H.3
  • 44
    • 0001468622 scopus 로고
    • Population subdivision for ribosomal DNA repeat variants in Clematis fremontii
    • Learn, G.H., Schaal, B.A., 1987. Population subdivision for ribosomal DNA repeat variants in Clematis fremontii. Evolution 41, 433-438.
    • (1987) Evolution , vol.41 , pp. 433-438
    • Learn, G.H.1    Schaal, B.A.2
  • 45
    • 0026552727 scopus 로고
    • Differential patterns of rDNA organisation in nuclei of wheat and rye
    • Leitch, A.R., Mosgöller, W., Shi, M., Helsop-Harrison, J.S., 1992. Differential patterns of rDNA organisation in nuclei of wheat and rye. J. Cell Sci. 101, 751-757.
    • (1992) J. Cell Sci. , vol.101 , pp. 751-757
    • Leitch, A.R.1    Mosgöller, W.2    Shi, M.3    Helsop-Harrison, J.S.4
  • 48
    • 0033933001 scopus 로고    scopus 로고
    • Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units
    • Lim, K.Y., Kovarík, A., Matýãsek, R., Bezdek, M., Lichtenstein, C.P., Leitch, A.R., 2000. Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units. Chromosoma 109, 161-172.
    • (2000) Chromosoma , vol.109 , pp. 161-172
    • Lim, K.Y.1    Kovarík, A.2    Matýãsek, R.3    Bezdek, M.4    Lichtenstein, C.P.5    Leitch, A.R.6
  • 49
    • 0034115570 scopus 로고    scopus 로고
    • The complete external transcribed spacer of 18S-26S rDNA: Amplification and phylogenetic utility at low taxonomic levels in Asteraceae and closely allied families
    • Linder, C.R., Goertzen, L.R., Heuvel, B.V., Francisco-Ortega, J., Jansen, R.K., 2000. The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in Asteraceae and closely allied families. Mol. Phylogenet. Evol. 14, 285-303.
    • (2000) Mol. Phylogenet. Evol. , vol.14 , pp. 285-303
    • Linder, C.R.1    Goertzen, L.R.2    Heuvel, B.V.3    Francisco-Ortega, J.4    Jansen, R.K.5
  • 50
    • 0030454390 scopus 로고    scopus 로고
    • Length variation in nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants
    • Liston, A., Robinson, W.A., Oliphant, J.M., Alvarez-Buylla, E.R., 1996. Length variation in nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants. Syst. Bot. 21, 109-120.
    • (1996) Syst. Bot. , vol.21 , pp. 109-120
    • Liston, A.1    Robinson, W.A.2    Oliphant, J.M.3    Alvarez-Buylla, E.R.4
  • 51
    • 0031020581 scopus 로고    scopus 로고
    • The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants
    • Mai, J.C., Coleman, A.W., 1997. The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. J. Mol. Evol. 44, 258-271.
    • (1997) J. Mol. Evol. , vol.44 , pp. 258-271
    • Mai, J.C.1    Coleman, A.W.2
  • 53
    • 0034782104 scopus 로고    scopus 로고
    • Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus
    • Mayol, M., Rosselló, J.A., 2001. Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus. Mol. Phylogenet. Evol. 19, 167-176.
    • (2001) Mol. Phylogenet. Evol. , vol.19 , pp. 167-176
    • Mayol, M.1    Rosselló, J.A.2
  • 55
    • 0035146034 scopus 로고    scopus 로고
    • Three divergent rDNA clusters predate the species divergence of Quercus petraea (Matt.) Liebl., Quercus robur L.
    • Muir, G., Fleming, C.C., Schlötterer, C., 2001. Three divergent rDNA clusters predate the species divergence of Quercus petraea (Matt.) Liebl., Quercus robur L. Mol. Biol. Evol. 18, 112-119.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 112-119
    • Muir, G.1    Fleming, C.C.2    Schlötterer, C.3
  • 56
    • 0000348343 scopus 로고
    • A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences
    • Nickrent, D.L., Soltis, D.E., 1995. A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences. Ann. Mo. Bot. Gard. 82, 208-234.
    • (1995) Ann. Mo. Bot. Gard. , vol.82 , pp. 208-234
    • Nickrent, D.L.1    Soltis, D.E.2
  • 57
    • 0003505466 scopus 로고    scopus 로고
    • Published by author. Ithaca, New York Shareware
    • Nixon, K.C., 1999. WinClada (Beta) version 09 Published by author. Ithaca, New York Shareware.
    • (1999) WinClada (Beta) Version 09
    • Nixon, K.C.1
  • 58
    • 0141991410 scopus 로고    scopus 로고
    • The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences
    • O'Kane Jr., S.L., Schaal, B.A., Al-Shehbaz, I.A., 1996. The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. Syst. Bot. 21, 559-566.
    • (1996) Syst. Bot. , vol.21 , pp. 559-566
    • O'Kane Jr., S.L.1    Schaal, B.A.2    Al-Shehbaz, I.A.3
  • 59
    • 0036134760 scopus 로고    scopus 로고
    • Using secondary structure to identify ribosomal numts: Cautionary examples from the human genome
    • Olsen, L.E., Yoder, A.D., 2002. Using secondary structure to identify ribosomal numts: cautionary examples from the human genome. Mol. Biol. Evol. 19, 93-100.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 93-100
    • Olsen, L.E.1    Yoder, A.D.2
  • 60
    • 0023822631 scopus 로고
    • Relationships between gene-trees and species-trees
    • Pamilo, P., Nei, M., 1988. Relationships between gene-trees and species-trees. Mol. Biol. Evol. 5, 568-583.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 61
    • 0036900685 scopus 로고    scopus 로고
    • Internal transcribed spacer repeat-specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex
    • Rauscher, J.T., Doyle, J.J., Brown, A.H.D., 2002. Internal transcribed spacer repeat-specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex. Mol. Ecol. 11, 2691-2702.
    • (2002) Mol. Ecol. , vol.11 , pp. 2691-2702
    • Rauscher, J.T.1    Doyle, J.J.2    Brown, A.H.D.3
  • 62
    • 0035929227 scopus 로고    scopus 로고
    • Rapid diversification of a species-rich genus of neotropical rainforest trees
    • Richardson, J.E., Pennington, R.T., Pennington, T.D., Hollingsworth, P.M., 2001. Rapid diversification of a species-rich genus of neotropical rainforest trees. Science 293, 2242-2245.
    • (2001) Science , vol.293 , pp. 2242-2245
    • Richardson, J.E.1    Pennington, R.T.2    Pennington, T.D.3    Hollingsworth, P.M.4
  • 63
    • 11944255719 scopus 로고
    • Reconstruction of organismal and gene phylogenies from data on multigene families: Concerted evolution, homoplasy and confidence
    • Sanderson, M.T., Doyle, J.J., 1992. Reconstruction of organismal and gene phylogenies from data on multigene families: concerted evolution, homoplasy and confidence. Syst. Biol. 41, 4-17.
    • (1992) Syst. Biol. , vol.41 , pp. 4-17
    • Sanderson, M.T.1    Doyle, J.J.2
  • 64
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • Sang, T., 2002. Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit. Rev. Biochem. Mol. Biol. 37, 121-147.
    • (2002) Crit. Rev. Biochem. Mol. Biol. , vol.37 , pp. 121-147
    • Sang, T.1
  • 65
    • 0029125662 scopus 로고
    • Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution
    • Sang, T., Crawford, D.J., Stuessy, T.F., 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution. Proc. Natl. Acad. Sci. USA 92, 6813-6817.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 6813-6817
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 66
    • 0000215283 scopus 로고    scopus 로고
    • Success of parsimony in the four-taxon case: Long branch repulsion by likelihood in the Farris Zone
    • Siddall, M.E., 1998. Success of parsimony in the four-taxon case: long branch repulsion by likelihood in the Farris Zone. Cladistics 14, 209-221.
    • (1998) Cladistics , vol.14 , pp. 209-221
    • Siddall, M.E.1
  • 67
    • 0033278654 scopus 로고    scopus 로고
    • How should species phylogenies be inferred from sequence data
    • Slowinski, J.B., Page, R.D.M., 1999. How should species phylogenies be inferred from sequence data. Syst. Biol. 48, 814-825.
    • (1999) Syst. Biol. , vol.48 , pp. 814-825
    • Slowinski, J.B.1    Page, R.D.M.2
  • 69
    • 0001254429 scopus 로고
    • Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae
    • Suh, Y., Thien, L.B., Reeve, H.E., Zimmer, E.A., 1993. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. Am. J. Bot. 80, 1042-1055.
    • (1993) Am. J. Bot. , vol.80 , pp. 1042-1055
    • Suh, Y.1    Thien, L.B.2    Reeve, H.E.3    Zimmer, E.A.4
  • 70
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 72
    • 0028534780 scopus 로고
    • Pattern and degree of methylation in ribosomal RNA genes of Cucurbita pepo L.
    • Torres-Ruiz, R.A., Hemleben, V., 1994. Pattern and degree of methylation in ribosomal RNA genes of Cucurbita pepo L. Plant Mol. Biol. 26, 1167-1179.
    • (1994) Plant Mol. Biol. , vol.26 , pp. 1167-1179
    • Torres-Ruiz, R.A.1    Hemleben, V.2
  • 73
    • 0033394095 scopus 로고    scopus 로고
    • Polyploid speciation in Hedera (Araliaceae): Phylogenetic and biogeographic insights based on chromosome counts and ITS sequences
    • Vargas, P., McAllister, H.A., Morton, C., Jury, S.L., Wilkinson, M.J., 1999. Polyploid speciation in Hedera (Araliaceae): phylogenetic and biogeographic insights based on chromosome counts and ITS sequences. Plant Syst. Evol. 219, 165-179.
    • (1999) Plant Syst. Evol. , vol.219 , pp. 165-179
    • Vargas, P.1    McAllister, H.A.2    Morton, C.3    Jury, S.L.4    Wilkinson, M.J.5
  • 74
    • 85030937547 scopus 로고    scopus 로고
    • Paralogous ITS loci in Mexican red oak species (Quercus section Lobatae) and their implications in phylogeny reconstruction
    • Vazquez, M.L., Doyle, J.J., Nixon, K.C., 2000. Paralogous ITS loci in Mexican red oak species (Quercus section Lobatae) and their implications in phylogeny reconstruction. American Society for Plant Taxonomists annual meeting-online abstracts, p. 189. Available from http://www.botany.org/bsa/ portland.
    • (2000) American Society for Plant Taxonomists Annual Meeting-online Abstracts , pp. 189
    • Vazquez, M.L.1    Doyle, J.J.2    Nixon, K.C.3
  • 75
    • 0028917850 scopus 로고
    • Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
    • Wendel, J.F., Schnabel, A., Seelanan, T., 1995. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA 92, 280-284.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 280-284
    • Wendel, J.F.1    Schnabel, A.2    Seelanan, T.3
  • 77
    • 0033299909 scopus 로고    scopus 로고
    • Molecular evidence for allopolyploid speciation and a single origin of the narrow endemic Draba ladina (Brassicaceae)
    • Widmer, A., Baltisberger, M., 1999. Molecular evidence for allopolyploid speciation and a single origin of the narrow endemic Draba ladina (Brassicaceae). Am. J. Bot. 86, 1282-1289.
    • (1999) Am. J. Bot. , vol.86 , pp. 1282-1289
    • Widmer, A.1    Baltisberger, M.2
  • 78
    • 0000378875 scopus 로고
    • Evidence for higher rates of nucleotide substitution in rodents than in man
    • Wu, C.-I., Li, W.-H., 1985. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA 82, 1741-1745.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 1741-1745
    • Wu, C.-I.1    Li, W.-H.2
  • 79
    • 0033257252 scopus 로고    scopus 로고
    • Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA
    • Yang, Y.W., Lai, K.N., Tai, P.Y., Ma, D.P., Li, W.H., 1999. Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA. Mol. Phylogenet. Evol. 13, 455-462.
    • (1999) Mol. Phylogenet. Evol. , vol.13 , pp. 455-462
    • Yang, Y.W.1    Lai, K.N.2    Tai, P.Y.3    Ma, D.P.4    Li, W.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.