메뉴 건너뛰기




Volumn 13, Issue 12, 2011, Pages 3088-3102

Human distal gut microbiome

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S;

EID: 82555165882     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2011.02574.x     Document Type: Short Survey
Times cited : (75)

References (103)
  • 1
    • 36649021589 scopus 로고    scopus 로고
    • Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples
    • Ahmed, S., Macfarlane, G.T., Fite, A., McBain, A.J., Gilbert, P., and Macfarlane, S. (2007) Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples. Appl Environ Microbiol 73: 7435-7442.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7435-7442
    • Ahmed, S.1    Macfarlane, G.T.2    Fite, A.3    McBain, A.J.4    Gilbert, P.5    Macfarlane, S.6
  • 2
    • 0032082492 scopus 로고    scopus 로고
    • In situ methods for assessment of microorganisms and their activities
    • Amann, R., and Kuhl, M. (1998) In situ methods for assessment of microorganisms and their activities. Curr Opin Microbiol 1: 352-358.
    • (1998) Curr Opin Microbiol , vol.1 , pp. 352-358
    • Amann, R.1    Kuhl, M.2
  • 5
    • 0024115419 scopus 로고
    • Novel method for studying plasmid transfer in undisturbed river epilithon
    • Bale, M.J., Day, M.J., and Fry, J.C. (1988) Novel method for studying plasmid transfer in undisturbed river epilithon. Appl Environ Microbiol 54: 2756-2758.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 2756-2758
    • Bale, M.J.1    Day, M.J.2    Fry, J.C.3
  • 6
    • 77955602581 scopus 로고    scopus 로고
    • Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians
    • Biagi, E., Nylund, L., Candela, M., Ostan, R., Bucci, L., Pini, E., etal. (2010) Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS ONE 5: e10667.
    • (2010) PLoS ONE , vol.5
    • Biagi, E.1    Nylund, L.2    Candela, M.3    Ostan, R.4    Bucci, L.5    Pini, E.6
  • 7
    • 78650847143 scopus 로고    scopus 로고
    • Mode of delivery affects the bacterial community in the newborn gut
    • Biasucci, G., Rubini, M., Riboni, S., Retetangos, C., Morelli, L., and Bessi, E. (2010) Mode of delivery affects the bacterial community in the newborn gut. Early Hum Dev 86 (Suppl. 1): 13-15.
    • (2010) Early Hum Dev , vol.86 , Issue.1 SUPPL. , pp. 13-15
    • Biasucci, G.1    Rubini, M.2    Riboni, S.3    Retetangos, C.4    Morelli, L.5    Bessi, E.6
  • 9
    • 79953204638 scopus 로고    scopus 로고
    • Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples
    • van den Bogert, B., de Vos, W.M., Zoetendal, E.G., and Kleerebezem, M. (2011) Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl Environ Microbiol 77: 2071-2080.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2071-2080
    • van den Bogert, B.1    de Vos, W.M.2    Zoetendal, E.G.3    Kleerebezem, M.4
  • 12
    • 79955062464 scopus 로고    scopus 로고
    • Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon
    • de Carcer, D.A., Cuiv, P.O., Wang, T., Kang, S., Worthley, D., Whitehall, V., etal. (2011) Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME J 5: 801-809.
    • (2011) ISME J , vol.5 , pp. 801-809
    • de Carcer, D.A.1    Cuiv, P.O.2    Wang, T.3    Kang, S.4    Worthley, D.5    Whitehall, V.6
  • 15
    • 0346035740 scopus 로고    scopus 로고
    • Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products
    • Courtois, S., Cappellano, C.M., Ball, M., Francou, F.X., Normand, P., Helynck, G., etal. (2003) Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products. Appl Environ Microbiol 69: 49-55.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 49-55
    • Courtois, S.1    Cappellano, C.M.2    Ball, M.3    Francou, F.X.4    Normand, P.5    Helynck, G.6
  • 16
    • 0031132109 scopus 로고    scopus 로고
    • Colonic microflora: nutrition and health
    • Cummings, J.H., and Macfarlane, G.T. (1997) Colonic microflora: nutrition and health. Nutrition 13: 476-478.
    • (1997) Nutrition , vol.13 , pp. 476-478
    • Cummings, J.H.1    Macfarlane, G.T.2
  • 17
    • 53049087266 scopus 로고    scopus 로고
    • The probiotic Bifidobacteria infantis: an assessment of potential antidepressant properties in the rat
    • Desbonnet, L., Garrett, L., Clarke, G., Bienenstock, J., and Dinan, T.G. (2008) The probiotic Bifidobacteria infantis: an assessment of potential antidepressant properties in the rat. J Psychiatr Res 43: 164-174.
    • (2008) J Psychiatr Res , vol.43 , pp. 164-174
    • Desbonnet, L.1    Garrett, L.2    Clarke, G.3    Bienenstock, J.4    Dinan, T.G.5
  • 18
    • 77955386857 scopus 로고    scopus 로고
    • Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
    • Dominguez-Bello, M.G., Costello, E.K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., and Knight, R. (2010) Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci USA 107: 11971-11975.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 11971-11975
    • Dominguez-Bello, M.G.1    Costello, E.K.2    Contreras, M.3    Magris, M.4    Hidalgo, G.5    Fierer, N.6    Knight, R.7
  • 19
    • 70349408423 scopus 로고    scopus 로고
    • High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol
    • Dridi, B., Henry, M., El Khechine, A., Raoult, D., and Drancourt, M. (2009) High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS ONE 4: e7063.
    • (2009) PLoS ONE , vol.4
    • Dridi, B.1    Henry, M.2    El Khechine, A.3    Raoult, D.4    Drancourt, M.5
  • 20
    • 79956371382 scopus 로고    scopus 로고
    • Archaea as emerging organisms in complex human microbiomes
    • Dridi, B., Raoult, D., and Drancourt, M. (2011) Archaea as emerging organisms in complex human microbiomes. Anaerobe 17: 56-63.
    • (2011) Anaerobe , vol.17 , pp. 56-63
    • Dridi, B.1    Raoult, D.2    Drancourt, M.3
  • 21
    • 33947694822 scopus 로고    scopus 로고
    • Cultivable bacterial diversity from the human colon
    • Duncan, S.H., Louis, P., and Flint, H.J. (2007) Cultivable bacterial diversity from the human colon. Lett Appl Microbiol 44: 343-350.
    • (2007) Lett Appl Microbiol , vol.44 , pp. 343-350
    • Duncan, S.H.1    Louis, P.2    Flint, H.J.3
  • 23
    • 20244366416 scopus 로고    scopus 로고
    • The prevalence and clinical significance of amniotic fluid 'sludge' in patients with preterm labor and intact membranes
    • Espinoza, J., Goncalves, L.F., Romero, R., Nien, J.K., Stites, S., Kim, Y.M., etal. (2005) The prevalence and clinical significance of amniotic fluid 'sludge' in patients with preterm labor and intact membranes. Ultrasound Obstet Gynecol 25: 346-352.
    • (2005) Ultrasound Obstet Gynecol , vol.25 , pp. 346-352
    • Espinoza, J.1    Goncalves, L.F.2    Romero, R.3    Nien, J.K.4    Stites, S.5    Kim, Y.M.6
  • 24
    • 0141868955 scopus 로고    scopus 로고
    • Development of bacterial and bifidobacterial communities in feces of newborn babies
    • Favier, C.F., de Vos, W.M., and Akkermans, A.D.L. (2003) Development of bacterial and bifidobacterial communities in feces of newborn babies. Anaerobe 9: 219-229.
    • (2003) Anaerobe , vol.9 , pp. 219-229
    • Favier, C.F.1    de Vos, W.M.2    Akkermans, A.D.L.3
  • 25
    • 35348857386 scopus 로고    scopus 로고
    • Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
    • Frank, D.N., St Amand, A.L., Feldman, R.A., Boedeker, E.C., Harpaz, N., and Pace, N.R. (2007) Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 104: 13780-13785.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 13780-13785
    • Frank, D.N.1    St Amand, A.L.2    Feldman, R.A.3    Boedeker, E.C.4    Harpaz, N.5    Pace, N.R.6
  • 27
    • 23944525404 scopus 로고    scopus 로고
    • Computational improvements reveal great bacterial diversity and high metal toxicity in soil
    • Gans, J., Wolinsky, M., and Dunbar, J. (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309: 1387-1390.
    • (2005) Science , vol.309 , pp. 1387-1390
    • Gans, J.1    Wolinsky, M.2    Dunbar, J.3
  • 28
    • 77957895590 scopus 로고    scopus 로고
    • DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences
    • Ghosh, T.S., Monzoorul Haque, M., and Mande, S.S. (2010) DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. BMC Bioinformatics 11 (Suppl. 7): S14.
    • (2010) BMC Bioinformatics , vol.11 , Issue.7 S
    • Ghosh, T.S.1    Monzoorul Haque, M.2    Mande, S.S.3
  • 30
    • 79952754522 scopus 로고    scopus 로고
    • A metagenomic beta-glucuronidase uncovers a core adaptive function of the human intestinal microbiome
    • Gloux, K., Berteau, O., El Oumami, H., Beguet, F., Leclerc, M., and Dore, J. (2011) A metagenomic beta-glucuronidase uncovers a core adaptive function of the human intestinal microbiome. Proc Natl Acad Sci USA 108 (Suppl. 1): 4539-4546.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.1 SUPPL. , pp. 4539-4546
    • Gloux, K.1    Berteau, O.2    El Oumami, H.3    Beguet, F.4    Leclerc, M.5    Dore, J.6
  • 31
    • 70749118179 scopus 로고    scopus 로고
    • Potential contribution of fungal infection and colonization to the development of allergy
    • Goldman, D.L., and Huffnagle, G.B. (2009) Potential contribution of fungal infection and colonization to the development of allergy. Med Mycol 47: 445-456.
    • (2009) Med Mycol , vol.47 , pp. 445-456
    • Goldman, D.L.1    Huffnagle, G.B.2
  • 32
    • 78651441275 scopus 로고    scopus 로고
    • MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks
    • Gori, F., Folino, G., Jetten, M.S., and Marchiori, E. (2011) MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics 27: 196-203.
    • (2011) Bioinformatics , vol.27 , pp. 196-203
    • Gori, F.1    Folino, G.2    Jetten, M.S.3    Marchiori, E.4
  • 33
    • 58549102934 scopus 로고    scopus 로고
    • A short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities
    • Harrington, C.R., Lucchini, S., Ridgway, K.P., Wegmann, U., Eaton, T.J., Hinton, J.C.D., etal. (2008) A short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities. BMC Microbiol 8: 195.
    • (2008) BMC Microbiol , vol.8 , pp. 195
    • Harrington, C.R.1    Lucchini, S.2    Ridgway, K.P.3    Wegmann, U.4    Eaton, T.J.5    Hinton, J.C.D.6
  • 34
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B.M., and Pace, N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 36
    • 79251559429 scopus 로고    scopus 로고
    • The human gut mobile metagenome, a metazoan perspective
    • Jones, B.V. (2010) The human gut mobile metagenome, a metazoan perspective. Gut Microbes 1: 415-431.
    • (2010) Gut Microbes , vol.1 , pp. 415-431
    • Jones, B.V.1
  • 37
    • 33845959386 scopus 로고    scopus 로고
    • Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome
    • Jones, B.V., and Marchesi, J.R. (2007) Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome. Nat Methods 4: 55-61.
    • (2007) Nat Methods , vol.4 , pp. 55-61
    • Jones, B.V.1    Marchesi, J.R.2
  • 38
    • 51649086648 scopus 로고    scopus 로고
    • Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome
    • Jones, B.V., Begley, M., Hill, C., Gahan, C.G.M., and Marchesi, J.R. (2008) Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome. Proc Natl Acad Sci USA 105: 13580-13585.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 13580-13585
    • Jones, B.V.1    Begley, M.2    Hill, C.3    Gahan, C.G.M.4    Marchesi, J.R.5
  • 39
    • 77049127826 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome
    • Jones, B.V., Sun, F., and Marchesi, J.R. (2010) Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome. BMC Genomics 11: 46.
    • (2010) BMC Genomics , vol.11 , pp. 46
    • Jones, B.V.1    Sun, F.2    Marchesi, J.R.3
  • 40
    • 34447104397 scopus 로고    scopus 로고
    • The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects
    • Kassinen, A., Krogius-Kurikka, L., Makivuokko, H., Rinttila, T., Paulin, L., Corander, J., etal. (2007) The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. Gastroenterology 133: 24-33.
    • (2007) Gastroenterology , vol.133 , pp. 24-33
    • Kassinen, A.1    Krogius-Kurikka, L.2    Makivuokko, H.3    Rinttila, T.4    Paulin, L.5    Corander, J.6
  • 41
    • 77951700268 scopus 로고    scopus 로고
    • Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent clostridium difficile-associated diarrhea
    • Khoruts, A., Dicksved, J., Jansson, J.K., and Sadowsky, M.J. (2010) Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent clostridium difficile-associated diarrhea. J Clin Gastroenterol 44: 354-360.
    • (2010) J Clin Gastroenterol , vol.44 , pp. 354-360
    • Khoruts, A.1    Dicksved, J.2    Jansson, J.K.3    Sadowsky, M.J.4
  • 43
    • 38449088143 scopus 로고    scopus 로고
    • Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
    • Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., etal. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 14: 169-181.
    • (2007) DNA Res , vol.14 , pp. 169-181
    • Kurokawa, K.1    Itoh, T.2    Kuwahara, T.3    Oshima, K.4    Toh, H.5    Toyoda, A.6
  • 44
    • 77958558890 scopus 로고    scopus 로고
    • Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-kappaB modulation in the human gut
    • Lakhdari, O., Cultrone, A., Tap, J., Gloux, K., Bernard, F., Ehrlich, S.D., etal. (2010) Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-kappaB modulation in the human gut. PLoS ONE 5: e13092.
    • (2010) PLoS ONE , vol.5
    • Lakhdari, O.1    Cultrone, A.2    Tap, J.3    Gloux, K.4    Bernard, F.5    Ehrlich, S.D.6
  • 45
    • 77957947562 scopus 로고    scopus 로고
    • Hundreds of variants clustered in genomic loci and biological pathways affect human height
    • Lango Allen, H., Estrada, K., Lettre, G., Berndt, S.I., Weedon, M.N., Rivadeneira, F., etal. (2010) Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature 467: 832-838.
    • (2010) Nature , vol.467 , pp. 832-838
    • Lango Allen, H.1    Estrada, K.2    Lettre, G.3    Berndt, S.I.4    Weedon, M.N.5    Rivadeneira, F.6
  • 46
    • 39649093188 scopus 로고    scopus 로고
    • Dysbiosis in inflammatory bowel disease: a role for bacteriophages?
    • Lepage, P., Colombet, J., Marteau, P., Sime-Ngando, T., Doré, J., and Leclerc, M. (2008) Dysbiosis in inflammatory bowel disease: a role for bacteriophages? Gut 57: 424-425.
    • (2008) Gut , vol.57 , pp. 424-425
    • Lepage, P.1    Colombet, J.2    Marteau, P.3    Sime-Ngando, T.4    Doré, J.5    Leclerc, M.6
  • 47
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley, R.E., Peterson, D.A., and Gordon, J.I. (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 49
    • 77649119543 scopus 로고    scopus 로고
    • Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
    • Louis, P., Young, P., Holtrop, G., and Flint, H.J. (2010) Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environ Microbiol 12: 304-314.
    • (2010) Environ Microbiol , vol.12 , pp. 304-314
    • Louis, P.1    Young, P.2    Holtrop, G.3    Flint, H.J.4
  • 50
    • 43249121029 scopus 로고    scopus 로고
    • Gut instincts: explorations in intestinal physiology and drug delivery
    • McConnell, E.L., Fadda, H.M., and Basit, A.W. (2008) Gut instincts: explorations in intestinal physiology and drug delivery. Int J Pharm 364: 213-226.
    • (2008) Int J Pharm , vol.364 , pp. 213-226
    • McConnell, E.L.1    Fadda, H.M.2    Basit, A.W.3
  • 51
    • 0021349077 scopus 로고
    • The contribution of the large intestine to energy supplies in man
    • McNeil, N.I. (1984) The contribution of the large intestine to energy supplies in man. Am J Clin Nutr 39: 338-342.
    • (1984) Am J Clin Nutr , vol.39 , pp. 338-342
    • McNeil, N.I.1
  • 52
    • 52649107701 scopus 로고    scopus 로고
    • A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library
    • Manichanh, C., Chapple, C.E., Frangeul, L., Gloux, K., Guigo, R., and Dore, J. (2008) A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library. Nucleic Acid Res 36: 5180-5188.
    • (2008) Nucleic Acid Res , vol.36 , pp. 5180-5188
    • Manichanh, C.1    Chapple, C.E.2    Frangeul, L.3    Gloux, K.4    Guigo, R.5    Dore, J.6
  • 53
    • 34249036137 scopus 로고    scopus 로고
    • A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model
    • Martin, F.P., Dumas, M.E., Wang, Y., Legido-Quigley, C., Yap, I.K., Tang, H., etal. (2007) A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model. Mol Syst Biol 3: 112.
    • (2007) Mol Syst Biol , vol.3 , pp. 112
    • Martin, F.P.1    Dumas, M.E.2    Wang, Y.3    Legido-Quigley, C.4    Yap, I.K.5    Tang, H.6
  • 55
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E.M., Kubal, M., etal. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5    Kubal, M.6
  • 56
    • 52349091138 scopus 로고    scopus 로고
    • A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene
    • Mihajlovski, A., Alric, M., and Brugère, J.-F. (2008) A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene. Res Microbiol 159: 516-521.
    • (2008) Res Microbiol , vol.159 , pp. 516-521
    • Mihajlovski, A.1    Alric, M.2    Brugère, J.-F.3
  • 57
    • 78649715888 scopus 로고    scopus 로고
    • Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity
    • Mihajlovski, A., Doré, J., Levenez, F., Alric, M., and Brugère, J.F. (2010) Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity. Environ Microbiol Rep 2: 272-280.
    • (2010) Environ Microbiol Rep , vol.2 , pp. 272-280
    • Mihajlovski, A.1    Doré, J.2    Levenez, F.3    Alric, M.4    Brugère, J.F.5
  • 58
    • 79951836666 scopus 로고    scopus 로고
    • Characterization of bacteria in biopsies of colon and stools by high throughput sequencing of the V2 region of bacterial 16S rRNA gene in human
    • Momozawa, Y., Deffontaine, V., Louis, E., and Medrano, J.F. (2011) Characterization of bacteria in biopsies of colon and stools by high throughput sequencing of the V2 region of bacterial 16S rRNA gene in human. PLoS ONE 6: e16952.
    • (2011) PLoS ONE , vol.6
    • Momozawa, Y.1    Deffontaine, V.2    Louis, E.3    Medrano, J.F.4
  • 60
    • 17844404232 scopus 로고    scopus 로고
    • Gut microorganisms, mammalian metabolism and personalized health care
    • Nicholson, J.K., Holmes, E., and Wilson, I.D. (2005) Gut microorganisms, mammalian metabolism and personalized health care. Nat Rev Microbiol 3: 431-438.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 431-438
    • Nicholson, J.K.1    Holmes, E.2    Wilson, I.D.3
  • 61
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G., and Groisman, E.A. (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 62
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • O'Hara, A.M., and Shanahan, F. (2006) The gut flora as a forgotten organ. EMBO Rep 7: 688-693.
    • (2006) EMBO Rep , vol.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 63
    • 58149291318 scopus 로고    scopus 로고
    • Early life stress alters behavior, immunity, and microbiota in rats: implications for irritable bowel syndrome and psychiatric illnesses
    • O'Mahony, S.M., Marchesi, J.R., Scully, P., Codling, C., Ceolho, A.M., Quigley, E.M., etal. (2009) Early life stress alters behavior, immunity, and microbiota in rats: implications for irritable bowel syndrome and psychiatric illnesses. Biol Psychiatry 65: 263-267.
    • (2009) Biol Psychiatry , vol.65 , pp. 263-267
    • O'Mahony, S.M.1    Marchesi, J.R.2    Scully, P.3    Codling, C.4    Ceolho, A.M.5    Quigley, E.M.6
  • 66
    • 66249145389 scopus 로고    scopus 로고
    • High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray
    • Paliy, O., Kenche, H., Abernathy, F., and Michail, S. (2009) High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray. Appl Environ Microbiol 75: 3572-3579.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3572-3579
    • Paliy, O.1    Kenche, H.2    Abernathy, F.3    Michail, S.4
  • 68
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K.S., Manichanh, C., etal. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 69
    • 67649945513 scopus 로고    scopus 로고
    • Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
    • Rajilić-Stojanović, M., Heilig, H.G.H., Molenaar, D., Kajander, K., Surakka, A., Smidt, H., and De Vos, W.M. (2009) Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol 11: 1736-1751.
    • (2009) Environ Microbiol , vol.11 , pp. 1736-1751
    • Rajilić-Stojanović, M.1    Heilig, H.G.H.2    Molenaar, D.3    Kajander, K.4    Surakka, A.5    Smidt, H.6    De Vos, W.M.7
  • 70
  • 71
    • 78650776251 scopus 로고    scopus 로고
    • Optimizing the analysis of human intestinal microbiota with phylogenetic microarray
    • Rigsbee, L., Agans, R., Foy, B.D., and Paliy, O. (2011) Optimizing the analysis of human intestinal microbiota with phylogenetic microarray. FEMS Microbiol Ecol 75: 332-342.
    • (2011) FEMS Microbiol Ecol , vol.75 , pp. 332-342
    • Rigsbee, L.1    Agans, R.2    Foy, B.D.3    Paliy, O.4
  • 73
    • 41149108949 scopus 로고    scopus 로고
    • The hygiene hypothesis and psychiatric disorders
    • Rook, G.A., and Lowry, C.A. (2008) The hygiene hypothesis and psychiatric disorders. Trends Immunol 29: 150-158.
    • (2008) Trends Immunol , vol.29 , pp. 150-158
    • Rook, G.A.1    Lowry, C.A.2
  • 74
    • 33746217518 scopus 로고    scopus 로고
    • Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny
    • Rudi, K., Zimonja, M., and Naes, T. (2006) Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny. Int J Syst Evol Microbiol 56: 1565-1575.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1565-1575
    • Rudi, K.1    Zimonja, M.2    Naes, T.3
  • 75
    • 34247579752 scopus 로고    scopus 로고
    • Alignment-Independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space
    • Rudi, K., Zimonja, M., Kvenshagen, B., Rugtveit, J., Midtvedt, T., and Eggesbo, M. (2007) Alignment-Independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space. Appl Environ Microbiol 73: 2727-2734.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2727-2734
    • Rudi, K.1    Zimonja, M.2    Kvenshagen, B.3    Rugtveit, J.4    Midtvedt, T.5    Eggesbo, M.6
  • 76
    • 77954423033 scopus 로고    scopus 로고
    • Methane and the gastrointestinal tract
    • Sahakian, A.B., Jee, S.R., and Pimentel, M. (2010) Methane and the gastrointestinal tract. Dig Dis Sci 55: 2135-2143.
    • (2010) Dig Dis Sci , vol.55 , pp. 2135-2143
    • Sahakian, A.B.1    Jee, S.R.2    Pimentel, M.3
  • 77
    • 57349131283 scopus 로고    scopus 로고
    • Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces
    • Scanlan, P.D., and Marchesi, J.R. (2008) Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces. ISME J 2: 1183-1193.
    • (2008) ISME J , vol.2 , pp. 1183-1193
    • Scanlan, P.D.1    Marchesi, J.R.2
  • 78
    • 33750932588 scopus 로고    scopus 로고
    • Culture-independent analyses of the temporal variation of the dominant faecal microbiota and targeted bacterial sub-groups in Crohn's disease
    • Scanlan, P.D., Shanahan, F., O'Mahony, C., and Marchesi, J.R. (2006) Culture-independent analyses of the temporal variation of the dominant faecal microbiota and targeted bacterial sub-groups in Crohn's disease. J Clin Microbiol 44: 3980-3988.
    • (2006) J Clin Microbiol , vol.44 , pp. 3980-3988
    • Scanlan, P.D.1    Shanahan, F.2    O'Mahony, C.3    Marchesi, J.R.4
  • 79
    • 44849095951 scopus 로고    scopus 로고
    • Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis
    • Scanlan, P.D., Shanahan, F., and Marchesi, J.R. (2008a) Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis. BMC Microbiol 8: 79.
    • (2008) BMC Microbiol , vol.8 , pp. 79
    • Scanlan, P.D.1    Shanahan, F.2    Marchesi, J.R.3
  • 81
    • 0042970166 scopus 로고    scopus 로고
    • Development of the intestinal bacterial composition in hospitalized preterm infants in comparison with breast-fed, full-term infants
    • Schwiertz, A., Gruhl, B., Lobnitz, M., Michel, P., Radke, M., and Blaut, M. (2003) Development of the intestinal bacterial composition in hospitalized preterm infants in comparison with breast-fed, full-term infants. Pediatr Res 54: 393-399.
    • (2003) Pediatr Res , vol.54 , pp. 393-399
    • Schwiertz, A.1    Gruhl, B.2    Lobnitz, M.3    Michel, P.4    Radke, M.5    Blaut, M.6
  • 82
    • 79951811014 scopus 로고    scopus 로고
    • Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach
    • Sekelja, M., Berget, I., Næs, T., and Rudi, K. (2011) Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach. ISME J 5: 519-531.
    • (2011) ISME J , vol.5 , pp. 519-531
    • Sekelja, M.1    Berget, I.2    Næs, T.3    Rudi, K.4
  • 84
    • 0036848536 scopus 로고    scopus 로고
    • The prevalence and diversity of mobile genetic elements in bacterial communities of different environmental habitats: insights gained from different methodological approaches
    • Smalla, K., and Sobecky, P.A. (2002) The prevalence and diversity of mobile genetic elements in bacterial communities of different environmental habitats: insights gained from different methodological approaches. FEMS Microbiol Ecol 42: 165-175.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 165-175
    • Smalla, K.1    Sobecky, P.A.2
  • 86
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley, J.T., and Konopka, A. (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39: 321-346.
    • (1985) Annu Rev Microbiol , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 87
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - major players in the global ecosystem
    • Suttle, C.A. (2007) Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 5: 801-812.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 90
    • 78649649439 scopus 로고    scopus 로고
    • Toxin-antitoxin systems: why so many, what for?
    • Van Melderen, L. (2010) Toxin-antitoxin systems: why so many, what for? Curr Opin Microbiol 13: 781-785.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 781-785
    • Van Melderen, L.1
  • 91
    • 0036175648 scopus 로고    scopus 로고
    • Unculturable bacteria - the uncharacterized organisms that cause oral infections
    • Wade, W. (2002) Unculturable bacteria - the uncharacterized organisms that cause oral infections. J R Soc Med 95: 81-83.
    • (2002) J R Soc Med , vol.95 , pp. 81-83
    • Wade, W.1
  • 92
    • 78650973052 scopus 로고    scopus 로고
    • High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
    • Walker, A.W., Sanderson, J.D., Churcher, C., Parkes, G.C., Hudspith, B.N., Rayment, N., etal. (2011) High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol 11: 7.
    • (2011) BMC Microbiol , vol.11 , pp. 7
    • Walker, A.W.1    Sanderson, J.D.2    Churcher, C.3    Parkes, G.C.4    Hudspith, B.N.5    Rayment, N.6
  • 93
    • 79953733693 scopus 로고    scopus 로고
    • Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
    • Wang, Z., Klipfell, E., Bennett, B.J., Koeth, R., Levison, B.S., DuGar, B., etal. (2011) Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 472: 57-63.
    • (2011) Nature , vol.472 , pp. 57-63
    • Wang, Z.1    Klipfell, E.2    Bennett, B.J.3    Koeth, R.4    Levison, B.S.5    DuGar, B.6
  • 94
    • 0032527892 scopus 로고    scopus 로고
    • Preferential utilization of acetate by astrocytes is attributable to transport
    • Waniewski, R.A., and Martin, D.L. (1998) Preferential utilization of acetate by astrocytes is attributable to transport. J Neurosci 18: 5225-5233.
    • (1998) J Neurosci , vol.18 , pp. 5225-5233
    • Waniewski, R.A.1    Martin, D.L.2
  • 97
    • 33847402993 scopus 로고    scopus 로고
    • Bacteria and early human development
    • Wilks, M. (2007) Bacteria and early human development. Early Hum Dev 83: 165-170.
    • (2007) Early Hum Dev , vol.83 , pp. 165-170
    • Wilks, M.1
  • 98
    • 0015781684 scopus 로고
    • Intestinal bile acids and cholesterol absorption in the germfree
    • Wostmann, B.S. (1973) Intestinal bile acids and cholesterol absorption in the germfree. J Nutr 103: 982-990.
    • (1973) J Nutr , vol.103 , pp. 982-990
    • Wostmann, B.S.1
  • 99
    • 33847151750 scopus 로고    scopus 로고
    • The antibiotic resistome: the nexus of chemical and genetic diversity
    • Wright, G.D. (2007) The antibiotic resistome: the nexus of chemical and genetic diversity. Nat Rev Microbiol 5: 175-186.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 175-186
    • Wright, G.D.1
  • 100
    • 67650685282 scopus 로고    scopus 로고
    • More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body
    • Yang, X., Xie, L., Li, Y., and Wei, C. (2009) More than 9, 000, 000 unique genes in human gut bacterial community: estimating gene numbers inside a human body. PLoS ONE 4: e6074.
    • (2009) PLoS ONE , vol.4
    • Yang, X.1    Xie, L.2    Li, Y.3    Wei, C.4
  • 101
    • 31144459030 scopus 로고    scopus 로고
    • RNA Viral community in human feces: prevalence of plant pathogenic viruses
    • Zhang, T., Breitbart, M., Lee, W.H., Run, J.-Q., Wei, C.L., Soh, S.W.L., etal. (2005) RNA Viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol 4: e3.
    • (2005) PLoS Biol , vol.4
    • Zhang, T.1    Breitbart, M.2    Lee, W.H.3    Run, J.-Q.4    Wei, C.L.5    Soh, S.W.L.6
  • 103
    • 0036300743 scopus 로고    scopus 로고
    • Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
    • Zoetendal, E.G., von Wright, A., Vilpponen-Salmela, T., Ben Amor, K., Akkermans, A.D., and de Vos, W.M. (2002) Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol 68: 3401-3407.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3401-3407
    • Zoetendal, E.G.1    von Wright, A.2    Vilpponen-Salmela, T.3    Ben Amor, K.4    Akkermans, A.D.5    de Vos, W.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.