-
1
-
-
36649021589
-
Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples
-
DOI 10.1128/AEM.01143-07
-
Ahmed S, Macfarlane GT, Fite A, McBain AJ, Gilbert P, Macfarlane S. (2007). Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples. Appl Environ Microbiol 73:7435-7442. (Pubitemid 350196697)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.22
, pp. 7435-7442
-
-
Ahmed, S.1
Macfarlane, G.T.2
Fite, A.3
McBain, A.J.4
Gilbert, P.5
Macfarlane, S.6
-
2
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
DOI 10.1126/science.1104816
-
Backhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. (2005). Host-bacterial mutualism in the human intestine. Science 307:1915-1920. (Pubitemid 40404694)
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
3
-
-
33749598269
-
Analysis with respect to instrumental variables for the exploration of microarray data structures
-
Baty F, Facompre M, Wiegand J, Schwager J, Brutsche MH. (2006). Analysis with respect to instrumental variables for the exploration of microarray data structures. BMC Bioinformatics 7:422.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 422
-
-
Baty, F.1
Facompre, M.2
Wiegand, J.3
Schwager, J.4
Brutsche, M.H.5
-
4
-
-
46149096500
-
Stability of gene contributions and identification of outliers in multivariate analysis of microarray data
-
Baty F, Jaeger D, Preiswerk F, Schumacher MM, Brutsche MH. (2008). Stability of gene contributions and identification of outliers in multivariate analysis of microarray data. BMC Bioinformatics 9:289.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 289
-
-
Baty, F.1
Jaeger, D.2
Preiswerk, F.3
Schumacher, M.M.4
Brutsche, M.H.5
-
5
-
-
34548483459
-
Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum
-
DOI 10.1038/ismej.2007.52, PII ISMEJ200752
-
Baumgart M, Dogan B, Rishniw M, Weitzman G, Bosworth B, Yantiss R et al. (2007). Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. ISME J 1:403-418. (Pubitemid 47373247)
-
(2007)
ISME Journal
, vol.1
, Issue.5
, pp. 403-418
-
-
Baumgart, M.1
Dogan, B.2
Rishniw, M.3
Weitzman, G.4
Bosworth, B.5
Yantiss, R.6
Orsi, R.H.7
Wiedmann, M.8
McDonough, P.9
Kim, S.G.10
Berg, D.11
Schukken, Y.12
Scherl, E.13
Simpson, K.W.14
-
6
-
-
77955602581
-
Through ageing, and beyond: Gut microbiota and inflammatory status in seniors and centenarians
-
Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini e et al. (2010). Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians. PLoS ONE 5: e10667.
-
(2010)
PLoS ONE
, vol.5
-
-
Biagi, E.1
Nylund, L.2
Candela, M.3
Ostan, R.4
Bucci, L.5
Pini, E.6
-
7
-
-
33747050143
-
The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients
-
DOI 10.1099/jmm.0.46498-0
-
Bibiloni R, Mangold M, Madsen KL, Fedorak RN, Tannock GW. (2006). The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients. J Med Microbiol 55:1141-1149. (Pubitemid 44215574)
-
(2006)
Journal of Medical Microbiology
, vol.55
, Issue.8
, pp. 1141-1149
-
-
Bibiloni, R.1
Mangold, M.2
Madsen, K.L.3
Fedorak, R.N.4
Tannock, G.W.5
-
8
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
DOI 10.1093/bioinformatics/19.2.185
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19:185-193. (Pubitemid 36181903)
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
9
-
-
0016342516
-
Effects of lactulose and other laxatives on ileal and colonic pH as measured by a radiotelemetry device
-
Bown RL, Gibson JA, Sladen GE, Hicks B, Dawson AM. (1974). Effects of lactulose and other laxatives on ileal and colonic pH as measured by a radiotelemetry device. Gut 15:999-1004.
-
(1974)
Gut
, vol.15
, pp. 999-1004
-
-
Bown, R.L.1
Gibson, J.A.2
Sladen, G.E.3
Hicks, B.4
Dawson, A.M.5
-
10
-
-
0035173609
-
Bacteria as the cause of ulcerative colitis
-
DOI 10.1136/gut.48.1.132
-
Campieri M, Gionchetti P. (2001). Bacteria as the cause of ulcerative colitis. Gut 48:132-135. (Pubitemid 32042654)
-
(2001)
Gut
, vol.48
, Issue.1
, pp. 132-135
-
-
Campieri, M.1
Gionchetti, P.2
-
11
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat Meth 7:335-336.
-
(2010)
Nat. Meth.
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
12
-
-
57349084107
-
Characterization of a Streptococcus sp. - Veillonella sp community micromanipulated from dental plaque
-
Chalmers NI, Palmer RJ, Cisar JO, Kolenbrander PE. (2008). Characterization of a Streptococcus sp. - Veillonella sp community micromanipulated from dental plaque. J Bacteriol 190:8145-8154.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 8145-8154
-
-
Chalmers, N.I.1
Palmer, R.J.2
Cisar, J.O.3
Kolenbrander, P.E.4
-
13
-
-
12244289603
-
Between-group analysis of microarray data
-
DOI 10.1093/bioinformatics/18.12.1600
-
Culhane AC, Perriere G, Considine EC, Cotter TG, Higgins DG. (2002). Between-group analysis of microarray data. Bioinformatics 18:1600-1608. (Pubitemid 36097725)
-
(2002)
Bioinformatics
, vol.18
, Issue.12
, pp. 1600-1608
-
-
Culhane, A.C.1
Perriere, G.2
Considine, E.C.3
Cotter, T.G.4
Higgins, D.G.5
-
14
-
-
33751016342
-
Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen
-
DOI 10.1111/j.1574-6941.2006.00190.x
-
Denman SE, McSweeney C. (2006). Development of a realtime PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol Ecol 58:572-582. (Pubitemid 44748164)
-
(2006)
FEMS Microbiology Ecology
, vol.58
, Issue.3
, pp. 572-582
-
-
Denman, S.E.1
McSweeney, C.S.2
-
15
-
-
37649024043
-
The ade4 package: Implementing the duality diagram for ecologists
-
Dray S, Dufour AB. (2007). The ade4 package: Implementing the duality diagram for ecologists. J Stat Softw 22:1-20.
-
(2007)
J. Stat Softw
, vol.22
, pp. 1-20
-
-
Dray, S.1
Dufour, A.B.2
-
16
-
-
20544444045
-
Microbiology: Diversity of the human intestinal microbial flora
-
DOI 10.1126/science.1110591
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M et al. (2005). Diversity of the human intestinal microbial flora. Science 308:1635-1638. (Pubitemid 40807514)
-
(2005)
Science
, vol.308
, Issue.5728
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
17
-
-
0035845501
-
Correspondence analysis applied to microarray data
-
DOI 10.1073/pnas.181597298
-
Fellenberg K, Hauser NC, Brors B, Neutzner A, Hoheisel JD, Vingron M. (2001). Correspondence analysis applied to microarray data. Proc Natl Acad Sci USA 98:10781-10786. (Pubitemid 32878697)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.19
, pp. 10781-10786
-
-
Fellenberg, K.1
Hauser, N.C.2
Brors, B.3
Neutzner, A.4
Hoheisel, J.D.5
Vingron, M.6
-
18
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
DOI 10.1073/pnas.0706625104
-
Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. (2007). Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 104:13780-13785. (Pubitemid 350003397)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.34
, pp. 13780-13785
-
-
Frank, D.N.1
St. Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
19
-
-
44649165721
-
Administration of Lactobacillus casei and Lactobacillus plantarum affects the diversity of murine intestinal lactobacilli, but not the overall bacterial community structure
-
Fuentes S, Egert M, Jiménez-Valera M, Ramos-Cormenzana A, Ruiz-Bravo A, Smidt H et al. (2008). Administration of Lactobacillus casei and Lactobacillus plantarum affects the diversity of murine intestinal lactobacilli, but not the overall bacterial community structure. Res Microbiol 159:237-243.
-
(2008)
Res. Microbiol.
, vol.159
, pp. 237-243
-
-
Fuentes, S.1
Egert, M.2
Jiménez-Valera, M.3
Ramos-Cormenzana, A.4
Ruiz-Bravo, A.5
Smidt, H.6
-
20
-
-
0031777846
-
Small bowel barium studies in Crohn's disease [1]
-
Gasche C, Schober E, Turetschek K. (1998). Small bowel barium studies in Crohn's disease. Gastroenterology 114:1349. (Pubitemid 28243923)
-
(1998)
Gastroenterology
, vol.114
, Issue.6
, pp. 1349
-
-
Gasche, C.1
Schober, E.2
Turetschek, K.3
-
22
-
-
0023958997
-
Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial-cells
-
Giovannoni SJ, Delong EF, Olsen GJ, Pace NR. (1988). Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial-cells. J Bacteriol 170:720-726.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 720-726
-
-
Giovannoni, S.J.1
Delong, E.F.2
Olsen, G.J.3
Pace, N.R.4
-
23
-
-
53049087109
-
Genomic and epigenetic instability in colorectal cancer pathogenesis
-
Grady WM, Carethers JM. (2008). Genomic and Epigenetic Instability in Colorectal Cancer Pathogenesis. Gastroenterology 135:1079-1099.
-
(2008)
Gastroenterology
, vol.135
, pp. 1079-1099
-
-
Grady, W.M.1
Carethers, J.M.2
-
24
-
-
33645110636
-
Molecular characterization of the bacteria adherent to human colorectal mucosa
-
Green GL, Brostoff J, Hudspith B, Michael M, Mylonaki M, Rayment N et al. (2006). Molecular characterization of the bacteria adherent to human colorectal mucosa. J Appl Microbiol 100:460-469.
-
(2006)
J. Appl. Microbiol.
, vol.100
, pp. 460-469
-
-
Green, G.L.1
Brostoff, J.2
Hudspith, B.3
Michael, M.4
Mylonaki, M.5
Rayment, N.6
-
25
-
-
0037425743
-
Gut flora in health and disease
-
DOI 10.1016/S0140-6736(03)12489-0
-
Guarner F, Malagelada JR. (2003). Gut flora in health and disease. Lancet 361:512-519. (Pubitemid 36173720)
-
(2003)
Lancet
, vol.361
, Issue.9356
, pp. 512-519
-
-
Guarner, F.1
Malagelada, J.-R.2
-
26
-
-
70350125099
-
Human gut microbiome adopts an alternative state following small bowel transplantation
-
Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, Zasloff M et al. (2009). Human gut microbiome adopts an alternative state following small bowel transplantation. Proc Natl Acad Sci USA 106:17187-17192.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17187-17192
-
-
Hartman, A.L.1
Lough, D.M.2
Barupal, D.K.3
Fiehn, O.4
Fishbein, T.5
Zasloff, M.6
-
27
-
-
77949284424
-
Effect of alginate and inulin on intestinal microbial ecology of weanling pigs reared under different husbandry conditions
-
Janczyk P, Pieper R, Smidt H, Souffrant WB. (2010). Effect of alginate and inulin on intestinal microbial ecology of weanling pigs reared under different husbandry conditions. FEMS Microbiology Ecology 72:132-142.
-
(2010)
FEMS Microbiology Ecology
, vol.72
, pp. 132-142
-
-
Janczyk, P.1
Pieper, R.2
Smidt, H.3
Souffrant, W.B.4
-
28
-
-
78649622569
-
Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray
-
doi:10.1002/ibd.21319
-
Kang S, Denman SE, Morrison M, Yu Z, Dore J, Leclerc M et al. (2010). Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflamm Bowel Dis, doi:10.1002/ibd.21319.
-
(2010)
Inflamm. Bowel Dis.
-
-
Kang, S.1
Denman, S.E.2
Morrison, M.3
Yu, Z.4
Dore, J.5
Leclerc, M.6
-
29
-
-
39549085742
-
Human prohibitin 1 maintains the organization and stability of the mitochondrial nucleoids
-
Kasashima K, Sumitani M, Satoh M, Endo H. (2008). Human prohibitin 1 maintains the organization and stability of the mitochondrial nucleoids. Experimental Cell Research 314:988-996.
-
(2008)
Experimental Cell. Research
, vol.314
, pp. 988-996
-
-
Kasashima, K.1
Sumitani, M.2
Satoh, M.3
Endo, H.4
-
30
-
-
0001857117
-
16S and 23S rRNA sequencing
-
Stackebrandt E, Goodfellow M eds , John Wiley: New York, NY
-
Lane D. (1990). 16S and 23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds). Nucleic acid techniques in bacterial systematics. John Wiley: New York, NY, pp 115-148.
-
(1990)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-148
-
-
Lane, D.1
-
32
-
-
18944401261
-
Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD
-
DOI 10.1097/01.MIB.0000159662.62651.06
-
Lepage P, Seksik P, Sutren M, de la Cochetiere MF, Jian R, Marteau P et al. (2005). Biodiversity of the mucosaassociated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD. Inflamm Bowel Dis 11:473-480. (Pubitemid 40704082)
-
(2005)
Inflammatory Bowel Diseases
, vol.11
, Issue.5
, pp. 473-480
-
-
Lepage, P.1
Seksik, P.2
Sutren, M.3
De La Cochetiere, M.-F.4
Jian, R.5
Marteau, P.6
Dore, J.7
-
33
-
-
0036154330
-
Culture-independent analysis of gut bacteria: The pig gastrointestinal tract microbiota revisited
-
DOI 10.1128/AEM.68.2.673-690.2002
-
Leser TD, Amenuvor JZ, Jensen TK, Lindecrona RH, Boye M, Moller K. (2002). Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol 68:673-690. (Pubitemid 34113056)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.2
, pp. 673-690
-
-
Leser, T.D.1
Amenuvor, J.Z.2
Jensen, T.K.3
Lindecrona, R.H.4
Boye, M.5
Mooller, K.6
-
34
-
-
0026586542
-
Comparison of fermentation reactions in different regions of the human colon
-
Macfarlane GT, Gibson GR, Cummings JH. (1992). Comparison of fermentation reactions in different regions of the human colon. J Appl Bacteriol 72:57-64.
-
(1992)
J. Appl. Bacteriol.
, vol.72
, pp. 57-64
-
-
Macfarlane, G.T.1
Gibson, G.R.2
Cummings, J.H.3
-
35
-
-
0021966514
-
Incidence of colorectal cancer in proctocolitis: A retrospective study of 959 cases over 40 years
-
Maratka Z, Nedbal J, Kocianova J, Havelka J, Kudrmann J, Hendl J. (1985). Incidence of colorectal cancer in proctocolitis: a retrospective study of 959 cases over 40 years. Gut 26:43-49. (Pubitemid 15109201)
-
(1985)
Gut
, vol.26
, Issue.1
, pp. 43-49
-
-
Maratka, Z.1
Nedbal, J.2
Kocianova, J.3
-
36
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
DOI 10.1038/nature07008, PII NATURE07008
-
Mazmanian SK, Round JL, Kasper DL. (2008). A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453:620-625. (Pubitemid 351769307)
-
(2008)
Nature
, vol.453
, Issue.7195
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
37
-
-
40349113425
-
The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
-
McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z et al. (2008). The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS Pathog 4: e20.
-
(2008)
PLoS Pathog
, vol.4
-
-
McKenna, P.1
Hoffmann, C.2
Minkah, N.3
Aye, P.P.4
Lackner, A.5
Liu, Z.6
-
38
-
-
78650155416
-
Highlighting new phylogenetic specificities of Crohn's disease microbiota
-
doi:10.1002/ibd.21436
-
Mondot S, Kang S, Furet J, Aguirre de Carcer D, McSweeney C, Morrison M et al. (2010). Highlighting new phylogenetic specificities of Crohn's disease microbiota. Inflamm Bowel Dis, doi:10.1002/ibd.21436.
-
(2010)
Inflamm. Bowel Dis.
-
-
Mondot, S.1
Kang, S.2
Furet, J.3
Aguirre De Carcer, D.4
McSweeney, C.5
Morrison, M.6
-
39
-
-
33144460422
-
Differences in fecal microbiota in different European study populations in relation to age, gender, and country: A cross-sectional study
-
DOI 10.1128/AEM.72.2.1027-1033.2006
-
Mueller S, Saunier K, Hanisch C, Norin E, Alm L, Midtvedt T et al. (2006). Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microbiol 72:1027-1033. (Pubitemid 43271206)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.2
, pp. 1027-1033
-
-
Mueller, S.1
Saunier, K.2
Hanisch, C.3
Norin, E.4
Alm, L.5
Midtvedt, T.6
Cresci, A.7
Silvi, S.8
Orpianesi, C.9
Verdenelli, M.C.10
Clavel, T.11
Koebnick, C.12
Zunft, H.-J.F.13
Dore, J.14
Blaut, M.15
-
40
-
-
66249145389
-
High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray
-
Paliy O, Kenche H, Abernathy F, Michail S. (2009). High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray. Appl Environ Microbiol 75:3572-3579.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3572-3579
-
-
Paliy, O.1
Kenche, H.2
Abernathy, F.3
Michail, S.4
-
41
-
-
44649118583
-
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases
-
DOI 10.1016/j.chom.2008.05.001, PII S1931312808001492
-
Peterson DA, Frank DN, Pace NR, Gordon JI. (2008). Metagenomic Approaches for Defining the Pathogenesis of Inflammatory Bowel Diseases. Cell Host Microbe 3:417-427. (Pubitemid 351773097)
-
(2008)
Cell Host and Microbe
, vol.3
, Issue.6
, pp. 417-427
-
-
Peterson, D.A.1
Frank, D.N.2
Pace, N.R.3
Gordon, J.I.4
-
42
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW. (2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Pfaffl, M.W.1
-
43
-
-
0036893797
-
Protective role of appendicectomy on onset and severity of ulcerative colitis and Crohn's disease
-
DOI 10.1136/gut.51.6.808
-
Radford-Smith GL, Edwards JE, Purdie DM, Pandeya N, Watson M, Martin NG et al. (2002). Protective role of appendicectomy on onset and severity of ulcerative colitis and Crohn's disease. Gut 51:808-813. (Pubitemid 35408600)
-
(2002)
Gut
, vol.51
, Issue.6
, pp. 808-813
-
-
Radford-Smith, G.L.1
Edwards, J.E.2
Purdie, D.M.3
Pandeya, N.4
Watson, M.5
Martin, N.G.6
Green, A.7
Newman, B.8
Florin, T.H.J.9
-
44
-
-
67649945513
-
Development and application of the human intestinal tract chip, a phylogenetic microarray: Analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
-
doi:10.1111/j.1462-2920.2009.01900.x
-
Rajilic-Stojanovic M, Heilig HG, Molenaar D, Kajander K, Surakka A, Smidt H et al. (2009). Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol, doi:10.1111/j.1462-2920.2009.01900.x.
-
(2009)
Environ. Microbiol.
-
-
Rajilic-Stojanovic, M.1
Heilig, H.G.2
Molenaar, D.3
Kajander, K.4
Surakka, A.5
Smidt, H.6
-
45
-
-
35348933745
-
Multivariate analyses in microbial ecology
-
DOI 10.1111/j.1574-6941.2007.00375.x
-
Ramette A. (2007). Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 62:142-160. (Pubitemid 47610610)
-
(2007)
FEMS Microbiology Ecology
, vol.62
, Issue.2
, pp. 142-160
-
-
Ramette, A.1
-
46
-
-
16344370555
-
GoArrays: Highly dynamic and efficient microarray probe design
-
DOI 10.1093/bioinformatics/bti112
-
Rimour S, Hill D, Militon C, Peyret P. (2005). GoArrays: highly dynamic and efficient microarray probe design. Bioinformatics 21:1094-1103. (Pubitemid 40467933)
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1094-1103
-
-
Rimour, S.1
Hill, D.2
Militon, C.3
Peyret, P.4
-
47
-
-
9644268216
-
Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
-
DOI 10.1111/j.1365-2672.2004.02409.x
-
Rinttila T, Kassinen A, Malinen E, Krogius L, Palva A. (2004). Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. J Appl Microbiol 97:1166-1177. (Pubitemid 39573940)
-
(2004)
Journal of Applied Microbiology
, vol.97
, Issue.6
, pp. 1166-1177
-
-
Rinttila, T.1
Kassinen, A.2
Malinen, E.3
Krogius, L.4
Palva, A.5
-
48
-
-
38649115342
-
Microbial influences in inflammatory bowel diseases
-
DOI 10.1053/j.gastro.2007.11.059, PII S0016508507021579
-
Sartor RB. (2008). Microbial influences in inflammatory bowel diseases. Gastroenterology 134:577-594. (Pubitemid 351173057)
-
(2008)
Gastroenterology
, vol.134
, Issue.2
, pp. 577-594
-
-
Sartor, R.B.1
-
49
-
-
33750078701
-
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures
-
DOI 10.1128/AEM.00474-06
-
Schloss PD, Handelsman J. (2006). Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol 72:6773-6779. (Pubitemid 44582921)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.10
, pp. 6773-6779
-
-
Schloss, P.D.1
Handelsman, J.2
-
50
-
-
24744444522
-
Search for localized dysbiosis in Crohn's disease ulcerations by temporal temperature gradient gel electrophoresis of 16S rRNA
-
DOI 10.1128/JCM.43.9.4654-4658.2005
-
Seksik P, Lepage P, de la Cochetiere MF, Bourreille A, Sutren M, Galmiche JP et al. (2005). Search for localized dysbiosis in Crohn's disease ulcerations by temporal temperature gradient gel electrophoresis of 16S rRNA. J Clin Microbiol 43:4654-4658. (Pubitemid 41298258)
-
(2005)
Journal of Clinical Microbiology
, vol.43
, Issue.9
, pp. 4654-4658
-
-
Seksik, P.1
Lepage, P.2
De La Cochetiere, M.-F.3
Bourreille, A.4
Sutren, M.5
Galmiche, J.-P.6
Dore, J.7
Marteau, P.8
-
51
-
-
0034017583
-
Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization
-
DOI 10.1128/AEM.66.5.2263-2266.2000
-
Sghir A, Gramet G, Suau A, Rochet V, Pochart P, Dore J. (2000). Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Appl Environ Microbiol 66:2263-2266. (Pubitemid 30253765)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.5
, pp. 2263-2266
-
-
Sghir, A.1
Gramet, G.2
Suau, A.3
Rochet, V.4
Pochart, P.5
Dore, J.6
-
52
-
-
0023627334
-
Tissue oxygen tension as a predictor of colonic anastomotic healing
-
DOI 10.1007/BF02555426
-
Sheridan W, Lowndes R, Young H. (1987). Tissue oxygen tension as a predictor of colonic anastomotic healing. Dis Colon Rectum 30:867-871. (Pubitemid 17161857)
-
(1987)
Diseases of the Colon and Rectum
, vol.30
, Issue.11
, pp. 867-871
-
-
Sheridan, W.G.1
Lowndes, R.H.2
Young, H.L.3
-
53
-
-
2942691956
-
Getting a grip on things: How do communities of bacterial symbionts become established in our intestine?
-
DOI 10.1038/ni1079
-
Sonnenburg JL, Angenent LT, Gordon JI. (2004). Getting a grip on things: how do communities of bacterial symbionts become established in our intestine? Nat Immunol 5:569-573. (Pubitemid 38811880)
-
(2004)
Nature Immunology
, vol.5
, Issue.6
, pp. 569-573
-
-
Sonnenburg, J.L.1
Angenent, L.T.2
Gordon, J.I.3
-
54
-
-
77955566063
-
Microbial Community Development in a Dynamic Gut Model Is Reproducible, Colon Region Specific, and Selective for Bacteroidetes and Clostridium Cluster IX
-
Van den Abbeele P, Grootaert C, Marzorati M, Possemiers S, Verstraete W, Gerard P et al. (2010). Microbial Community Development in a Dynamic Gut Model Is Reproducible, Colon Region Specific, and Selective for Bacteroidetes and Clostridium Cluster IX. Appl Environ Microbiol 76:5237-5246.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 5237-5246
-
-
Van Den Abbeele, P.1
Grootaert, C.2
Marzorati, M.3
Possemiers, S.4
Verstraete, W.5
Gerard, P.6
-
55
-
-
34250358173
-
Patchy distribution of mucosal lesions in ileal Crohn's disease is not linked to differences in the dominant mucosa-associated bacteria: A study using fluorescence in situ hybridization and temporal temperature gradient gel electrophoresis
-
DOI 10.1002/ibd.20084
-
Vasquez N, Mangin I, Lepage P, Seksik P, Duong JP, Blum S et al. (2007). Patchy distribution of mucosal lesions in ileal Crohn's disease is not linked to differences in the dominant mucosa-associated bacteria: a study using fluorescence in situ hybridization and temporal temperature gradient gel electrophoresis. Inflamm Bowel Dis 13:684-692. (Pubitemid 46909982)
-
(2007)
Inflammatory Bowel Diseases
, vol.13
, Issue.6
, pp. 684-692
-
-
Vasquez, N.1
Mangin, I.2
Lepage, P.3
Seksik, P.4
Duong, J.-P.5
Blum, S.6
Schiffrin, E.7
Suau, A.8
Allez, M.9
Vernier, G.10
Treton, X.11
Dore, J.12
Marteau, P.13
Pochart, P.14
-
56
-
-
24944540682
-
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
-
DOI 10.1016/j.femsec.2005.03.012, PII S0168649605000942
-
Wang M, Ahrne S, Jeppsson B, Molin G. (2005). Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol Ecol 54:219-231. (Pubitemid 41317922)
-
(2005)
FEMS Microbiology Ecology
, vol.54
, Issue.2
, pp. 219-231
-
-
Wang, M.1
Ahrne, S.2
Jeppsson, B.3
Molin, G.4
-
57
-
-
0029881547
-
PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
-
Wang RF, Cao WW, Cerniglia CE. (1996). PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl Environ Microbiol 62:1242-1247. (Pubitemid 26113201)
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.4
, pp. 1242-1247
-
-
Wang, R.-F.1
Cao, W.-W.2
Cerniglia, C.E.3
-
58
-
-
33745541234
-
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
-
DOI 10.1038/ng1834, PII N1834
-
Weisenberger DJ, D'Siegmund K, Campan M, Young J, Long TI, Faasse MA et al. (2006). CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet 38:787-793. (Pubitemid 43980599)
-
(2006)
Nature Genetics
, vol.38
, Issue.7
, pp. 787-793
-
-
Weisenberger, D.J.1
Siegmund, K.D.2
Campan, M.3
Young, J.4
Long, T.I.5
Faasse, M.A.6
Kang, G.H.7
Widschwendter, M.8
Weener, D.9
Buchanan, D.10
Koh, H.11
Simms, L.12
Barker, M.13
Leggett, B.14
Levine, J.15
Kim, M.16
French, A.J.17
Thibodeau, S.N.18
Jass, J.19
Haile, R.20
Laird, P.W.21
more..
-
59
-
-
66249129571
-
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease
-
Willing B, Halfvarson J, Dicksved J, Rosenquist M, Jarnerot G, Engstrand L et al. (2009). Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. Inflamm Bowel Dis 15:653-660.
-
(2009)
Inflamm. Bowel Dis.
, vol.15
, pp. 653-660
-
-
Willing, B.1
Halfvarson, J.2
Dicksved, J.3
Rosenquist, M.4
Jarnerot, G.5
Engstrand, L.6
-
60
-
-
0036300743
-
Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
-
DOI 10.1128/AEM.68.7.3401-3407.2002
-
Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben-Amor K, Akkermans AD, de Vos WM. (2002). Mucosaassociated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol 68:3401-3407. (Pubitemid 34734038)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.7
, pp. 3401-3407
-
-
Zoetendal, E.G.1
Von Wright, A.2
Vilpponen-Salmela, T.3
Ben-Amor, K.4
Akkermans, A.D.L.5
De Vos, W.M.6
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