-
1
-
-
22144439433
-
Behavioral degradation under mutation accumulation in C. elegans
-
Ajie, B. C., S. Estes, M. Lynch, and P. C. Phillips. 2005. Behavioral degradation under mutation accumulation in C. elegans. Genetics 170:655-660.
-
(2005)
Genetics
, vol.170
, pp. 655-660
-
-
Ajie, B.C.1
Estes, S.2
Lynch, M.3
Phillips, P.C.4
-
2
-
-
34249801404
-
Temporal dynamics and linkage disequilibrium in natural Caenorhabditis elegans populations
-
Barrière, A., and M.-A. Félix. 2007. Temporal dynamics and linkage disequilibrium in natural Caenorhabditis elegans populations. Genetics 176:999-1011.
-
(2007)
Genetics
, vol.176
, pp. 999-1011
-
-
Barrière, A.1
Félix, M.-A.2
-
3
-
-
0034632830
-
Evolvability in an RNA virus is determined by its mutational neighbourhood
-
Burch, C. L., and L. Chao. 2000. Evolvability in an RNA virus is determined by its mutational neighbourhood. Nature 406:625-629.
-
(2000)
Nature
, vol.406
, pp. 625-629
-
-
Burch, C.L.1
Chao, L.2
-
5
-
-
34249794251
-
A negative relationship between mutation pleiotropy and fitness effects in yeast
-
Cooper, T. F., E. A. Ostrowski, and M. Travisano. 2007. A negative relationship between mutation pleiotropy and fitness effects in yeast. Evolution 61:1495-1499.
-
(2007)
Evolution
, vol.61
, pp. 1495-1499
-
-
Cooper, T.F.1
Ostrowski, E.A.2
Travisano, M.3
-
6
-
-
48249115639
-
The ascent of the abundant: how mutational networks constrain evolution
-
Cowperthwaite, M. C., E. P. Economo, W. R. Harcombe, E. L. Miller, and L. A. Meyers. 2008. The ascent of the abundant: how mutational networks constrain evolution. PLoS Comput. Biol. 4:e1000110.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Cowperthwaite, M.C.1
Economo, E.P.2
Harcombe, W.R.3
Miller, E.L.4
Meyers, L.A.5
-
7
-
-
33644768092
-
Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans
-
Cutter, A. D. 2006. Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans. Genetics 172:171-184.
-
(2006)
Genetics
, vol.172
, pp. 171-184
-
-
Cutter, A.D.1
-
8
-
-
0034730598
-
High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans
-
Denver, D. R., K. Morris, M. Lynch, L. L. Vassilieva, and W. K. Thomas. 2000. High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans. Science 289:2342-2344.
-
(2000)
Science
, vol.289
, pp. 2342-2344
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Vassilieva, L.L.4
Thomas, W.K.5
-
9
-
-
0037360525
-
Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing
-
Denver, D. R., K. Morris, and W. K. Thomas. 2003. Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing. Mol. Biol. Evol. 20:393-400.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 393-400
-
-
Denver, D.R.1
Morris, K.2
Thomas, W.K.3
-
10
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
-
Denver, D. R., K. Morris, M. Lynch, and W. K. Thomas. 2004. High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 430:679-82.
-
(2004)
Nature
, vol.430
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
-
11
-
-
70349507538
-
A genome-wide view of Caenorhabditis elegans base substitution mutation processes
-
Denver, D. R., P. C. Dolan, L. J. Wilhelm, W. Sung, J. I. Lucas-Lledó, D. K. Howe, S. C. Lewis, K. Okamoto, W. K. Thomas, M. Lynch, et al. 2009. A genome-wide view of Caenorhabditis elegans base substitution mutation processes. Proc. Nat. Acad. Sci. USA 106:16310-16314.
-
(2009)
Proc. Nat. Acad. Sci. USA
, vol.106
, pp. 16310-16314
-
-
Denver, D.R.1
Dolan, P.C.2
Wilhelm, L.J.3
Sung, W.4
Lucas-Lledó, J.I.5
Howe, D.K.6
Lewis, S.C.7
Okamoto, K.8
Thomas, W.K.9
Lynch, M.10
-
12
-
-
78650052755
-
Selective sweeps and parallel mutation in the adaptive recovery from deleterious mutation in Caenorhabditis elegans
-
Denver, D. R., D. K. Howe, L. Wilhelm, C. A. Palmer, J. L. Anderson, K. C. Stein, P. C. Phillips, and S. Estes. 2010. Selective sweeps and parallel mutation in the adaptive recovery from deleterious mutation in Caenorhabditis elegans. Genome Res, 20:1663-1671.
-
(2010)
Genome Res
, vol.20
, pp. 1663-1671
-
-
Denver, D.R.1
Howe, D.K.2
Wilhelm, L.3
Palmer, C.A.4
Anderson, J.L.5
Stein, K.C.6
Phillips, P.C.7
Estes, S.8
-
13
-
-
34249794852
-
Inbreeding and outbreeding depression in Caenorhabditis nematodes
-
Dolgin, E. S., B. Charlesworth, S. E. Baird, and A. D. Cutter. 2007. Inbreeding and outbreeding depression in Caenorhabditis nematodes. Evolution 61:1339-1352.
-
(2007)
Evolution
, vol.61
, pp. 1339-1352
-
-
Dolgin, E.S.1
Charlesworth, B.2
Baird, S.E.3
Cutter, A.D.4
-
14
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
-
Elena, S. F., and R. E. Lenski. 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Gen. 4:457-469.
-
(2003)
Nat. Rev. Gen.
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
15
-
-
0037805770
-
Rapid fitness recovery in mutationally degraded lines of Caenorhabditis elegans
-
Estes, S., and M. Lynch. 2003. Rapid fitness recovery in mutationally degraded lines of Caenorhabditis elegans. Evolution 57:1022-1030.
-
(2003)
Evolution
, vol.57
, pp. 1022-1030
-
-
Estes, S.1
Lynch, M.2
-
16
-
-
33846858635
-
Variation in pleiotropy and the mutational underpinnings of the G-matrix
-
Estes, S., and P. C. Phillips. 2006. Variation in pleiotropy and the mutational underpinnings of the G-matrix. Evolution 60:2655-2660.
-
(2006)
Evolution
, vol.60
, pp. 2655-2660
-
-
Estes, S.1
Phillips, P.C.2
-
17
-
-
22144431904
-
Spontaneous mutational correlations for life-history, morphological, and behavioral characters in Caenorhabditis elegans
-
Estes, S., B. C. Ajie, M. Lynch, and P. C. Phillips. 2005. Spontaneous mutational correlations for life-history, morphological, and behavioral characters in Caenorhabditis elegans. Genetics 170:645-653.
-
(2005)
Genetics
, vol.170
, pp. 645-653
-
-
Estes, S.1
Ajie, B.C.2
Lynch, M.3
Phillips, P.C.4
-
19
-
-
0031284943
-
Evolution and speciation on holey adaptive landscapes
-
Gavrilets, S. 1997. Evolution and speciation on holey adaptive landscapes. Trends Ecol. Evol. 12:307-312.
-
(1997)
Trends Ecol. Evol.
, vol.12
, pp. 307-312
-
-
Gavrilets, S.1
-
20
-
-
33845672511
-
Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions
-
Haag, E. S. 2007. Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions. Genetica 129:45-55.
-
(2007)
Genetica
, vol.129
, pp. 45-55
-
-
Haag, E.S.1
-
21
-
-
34047229695
-
The mutation matrix and the evolution of evolvability
-
Jones, A. G., S. J. Arnold, and R. Bürger. 2007. The mutation matrix and the evolution of evolvability. Evolution 61:727-745.
-
(2007)
Evolution
, vol.61
, pp. 727-745
-
-
Jones, A.G.1
Arnold, S.J.2
Bürger, R.3
-
22
-
-
0034644576
-
Deleterious mutations and the evolution of sex
-
Keightley, P. D., and A. Eyre-Walker. 2000. Deleterious mutations and the evolution of sex. Science 290:331-333.
-
(2000)
Science
, vol.290
, pp. 331-333
-
-
Keightley, P.D.1
Eyre-Walker, A.2
-
23
-
-
33748428600
-
Interference among deleterious mutations favors sex and recombination in finite populations
-
Keightley, P. D., and S. P. Otto. 2006. Interference among deleterious mutations favors sex and recombination in finite populations. Nature 443:89-92.
-
(2006)
Nature
, vol.443
, pp. 89-92
-
-
Keightley, P.D.1
Otto, S.P.2
-
24
-
-
0033832535
-
Properties of elthylmethane sulfonate-induced mutations affecting life-history traits in Caenorhabditis elegans and inferences about bivariate distributions of mutation effects
-
Keightley, P. D., E. K. Davies, A. D. Peters, and R. D. Shaw. 2000. Properties of elthylmethane sulfonate-induced mutations affecting life-history traits in Caenorhabditis elegans and inferences about bivariate distributions of mutation effects. Genetics 156:143-154.
-
(2000)
Genetics
, vol.156
, pp. 143-154
-
-
Keightley, P.D.1
Davies, E.K.2
Peters, A.D.3
Shaw, R.D.4
-
25
-
-
52449148668
-
The role of compensatory neutral mutations in molecular evolution
-
Kimura, M. 1985. The role of compensatory neutral mutations in molecular evolution. J. Genet. 64:7-19.
-
(1985)
J. Genet.
, vol.64
, pp. 7-19
-
-
Kimura, M.1
-
26
-
-
0028162824
-
Risk of population extinction from new deleterious mutations
-
Lande, R. 1994. Risk of population extinction from new deleterious mutations. Evolution 48:1460-1469.
-
(1994)
Evolution
, vol.48
, pp. 1460-1469
-
-
Lande, R.1
-
29
-
-
0028983653
-
Mutation accumulation and the extinction of small populations
-
Lynch, M., J. Conery, and R. Bürger. 1995. Mutation accumulation and the extinction of small populations. Am. Nat. 146:489-518.
-
(1995)
Am. Nat.
, vol.146
, pp. 489-518
-
-
Lynch, M.1
Conery, J.2
Bürger, R.3
-
30
-
-
85088085117
-
Spontaneous deleterious mutation
-
Lynch, M., J. Blanchard, D. Houle, T. Kibota, S. Schultz, L. Vassilieva, and J. Willis. 1997. Spontaneous deleterious mutation. Evolution 53:645-663.
-
(1997)
Evolution
, vol.53
, pp. 645-663
-
-
Lynch, M.1
Blanchard, J.2
Houle, D.3
Kibota, T.4
Schultz, S.5
Vassilieva, L.6
Willis, J.7
-
31
-
-
33747080569
-
A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species
-
Martin, G., and T. Lenormand. 2007. A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species. Evolution 60:893-907.
-
(2007)
Evolution
, vol.60
, pp. 893-907
-
-
Martin, G.1
Lenormand, T.2
-
32
-
-
0034615640
-
Pervasive compensatory adaptation in Escherichia coli
-
Moore, F. B. G., D. E. Rozen, and R. E. Lenski. 2000. Pervasive compensatory adaptation in Escherichia coli. Proc. R. Soc. Lond. B 267:515-522.
-
(2000)
Proc. R. Soc. Lond. B
, vol.267
, pp. 515-522
-
-
Moore, F.B.G.1
Rozen, D.E.2
Lenski, R.E.3
-
33
-
-
70450216425
-
Mutation load and rapid adaptation favour outcrossing over self-fertilization
-
Morran, L. T., M. D. Parmenter, and P. C. Phillips. 2009. Mutation load and rapid adaptation favour outcrossing over self-fertilization. Nature 462:350-352.
-
(2009)
Nature
, vol.462
, pp. 350-352
-
-
Morran, L.T.1
Parmenter, M.D.2
Phillips, P.C.3
-
34
-
-
13244264987
-
The probability of parallel evolution
-
Orr, H. A. 2005. The probability of parallel evolution. Evolution 59:216-220.
-
(2005)
Evolution
, vol.59
, pp. 216-220
-
-
Orr, H.A.1
-
35
-
-
0034025692
-
Adaptation and the cost of complexity
-
Orr, H. A. 2000. Adaptation and the cost of complexity. Evolution 54:13-20.
-
(2000)
Evolution
, vol.54
, pp. 13-20
-
-
Orr, H.A.1
-
36
-
-
0343776158
-
The evolutionary genetics of adaptation: a simulation study
-
Orr, H. A. 1999. The evolutionary genetics of adaptation: a simulation study. Genet. Res. 74:207-214.
-
(1999)
Genet. Res.
, vol.74
, pp. 207-214
-
-
Orr, H.A.1
-
37
-
-
0031714655
-
The population genetics of adaptation: the distribution of factors fixed during adaptive evolution
-
Orr, H. A. 1998. The population genetics of adaptation: the distribution of factors fixed during adaptive evolution. Evolution 52:935-949.
-
(1998)
Evolution
, vol.52
, pp. 935-949
-
-
Orr, H.A.1
-
38
-
-
49849083143
-
Population extinction and the genetics of adaptation
-
Orr, H. A., and R. L. Unckless. 2008. Population extinction and the genetics of adaptation. Am. Nat. 172:160-169.
-
(2008)
Am. Nat.
, vol.172
, pp. 160-169
-
-
Orr, H.A.1
Unckless, R.L.2
-
39
-
-
54149088214
-
Epistasis: the fundamental role of gene interactions in the structure and evolution of genetic systems
-
Phillips, P. C. 2008. Epistasis: the fundamental role of gene interactions in the structure and evolution of genetic systems. Nat. Rev. Gen. 9:855-867.
-
(2008)
Nat. Rev. Gen.
, vol.9
, pp. 855-867
-
-
Phillips, P.C.1
-
40
-
-
0029896552
-
Waiting for a compensatory mutation: phase zero of the shifting-balance process
-
Phillips, P. C. 1996. Waiting for a compensatory mutation: phase zero of the shifting-balance process. Genet. Res. 67:271-283.
-
(1996)
Genet. Res.
, vol.67
, pp. 271-283
-
-
Phillips, P.C.1
-
41
-
-
0002854090
-
Beyond the average: the evolutionary importance of epistasis and the variability of epistatic effects
-
J. Wolf, E. D. Brodie III and M. J. Wade, eds. Oxford Univ. Press, Oxford.
-
Phillips, P. C., S. P. Otto, and M. C. Whitlock. 2000. Beyond the average: the evolutionary importance of epistasis and the variability of epistatic effects. Pp. 20-38 in J. Wolf, E. D. Brodie III and M. J. Wade, eds. Epistasis and the evolutionary process. Oxford Univ. Press, Oxford.
-
(2000)
Epistasis and the evolutionary process
, pp. 20-38
-
-
Phillips, P.C.1
Otto, S.P.2
Whitlock, M.C.3
-
42
-
-
0033677913
-
Compensating for our load of mutations: freezing the meltdown of small populations
-
Poon, A. F. Y., and S. P. Otto. 2000. Compensating for our load of mutations: freezing the meltdown of small populations. Evolution 54:1467-1479.
-
(2000)
Evolution
, vol.54
, pp. 1467-1479
-
-
Poon, A.F.Y.1
Otto, S.P.2
-
43
-
-
21044440015
-
The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood
-
Poon, A. F. Y., B. H. Davis, and L. Chao. 2005. The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood. Genetics 170:1323-1332.
-
(2005)
Genetics
, vol.170
, pp. 1323-1332
-
-
Poon, A.F.Y.1
Davis, B.H.2
Chao, L.3
-
44
-
-
61849143272
-
Recombinational landscape and population genomics of Caenorhabditis elegans
-
Rockman, M. V., Kruglyak L. 2009. Recombinational landscape and population genomics of Caenorhabditis elegans. PLoS Genet. 5:e1000419.
-
(2009)
PLoS Genet.
, vol.5
-
-
Rockman, M.V.1
Kruglyak, L.2
-
45
-
-
45849137874
-
Heterogeneous adaptive trajectories of small populations on complex fitness landscapes
-
Rozen, D. E., M. G. J. L. Habets, A. Handel, and J. A. G. M. de Visser. 2008. Heterogeneous adaptive trajectories of small populations on complex fitness landscapes. PLoS One 3:e1715.
-
(2008)
PLoS One
, vol.3
-
-
Rozen, D.E.1
Habets, M.G.J.L.2
Handel, A.3
de Visser, J.A.G.M.4
-
46
-
-
23344432889
-
Epistasis and the adaptability of an RNA virus
-
Sanjuán, R., J. M. Cuevas, A. Moya, and S. F. Elena. 2005. Epistasis and the adaptability of an RNA virus. Genetics 170:1001-1008.
-
(2005)
Genetics
, vol.170
, pp. 1001-1008
-
-
Sanjuán, R.1
Cuevas, J.M.2
Moya, A.3
Elena, S.F.4
-
47
-
-
34247349509
-
Understanding the evolutionary fate of finite populations: the dynamics of mutational effects
-
Silander, O. K., O. Tenaillon, and L. Chao. 2007. Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. PLoS Biol. 5:e94.
-
(2007)
PLoS Biol.
, vol.5
-
-
Silander, O.K.1
Tenaillon, O.2
Chao, L.3
-
48
-
-
59849107271
-
Is genetic evolution predictable?
-
Stern, D. L., and V. Orgogozo. 2009. Is genetic evolution predictable? Science 323:746-751.
-
(2009)
Science
, vol.323
, pp. 746-751
-
-
Stern, D.L.1
Orgogozo, V.2
-
49
-
-
0038072991
-
Reverse evolution
-
Teotónio, H., and M. R. Rose. 2001. Reverse evolution. Evolution 55:653-660.
-
(2001)
Evolution
, vol.55
, pp. 653-660
-
-
Teotónio, H.1
Rose, M.R.2
-
50
-
-
0036068810
-
Reverse evolution of fitness in Drosophila melanogaster
-
Teotónio, H., M. Matos, and M. R. Rose. 2002. Reverse evolution of fitness in Drosophila melanogaster. J. Evol. Biol. 15:608-617.
-
(2002)
J. Evol. Biol.
, vol.15
, pp. 608-617
-
-
Teotónio, H.1
Matos, M.2
Rose, M.R.3
-
51
-
-
0028977087
-
Experimental tests of the roles of adaptation, chance, and history in evolution
-
Travisano, M., J. A. Mongold, A. F. Bennett, and R. E. Lenski. 1995. Experimental tests of the roles of adaptation, chance, and history in evolution. Science 267:87-90.
-
(1995)
Science
, vol.267
, pp. 87-90
-
-
Travisano, M.1
Mongold, J.A.2
Bennett, A.F.3
Lenski, R.E.4
-
52
-
-
0028163119
-
Long-term experimental evolution in Escherichia coli. II. Changes in life-history traits during adaptation to a seasonal environment
-
Vasi, F., M. Travisano, and R. E. Lenski. 1994. Long-term experimental evolution in Escherichia coli. II. Changes in life-history traits during adaptation to a seasonal environment. Am. Nat. 144:432-456.
-
(1994)
Am. Nat.
, vol.144
, pp. 432-456
-
-
Vasi, F.1
Travisano, M.2
Lenski, R.E.3
-
53
-
-
0033831346
-
The fitness effects of spontaneous mutations in Caenorhabditis elegans
-
Vassilieva, L. L., A. M. Hook, and M. Lynch. 2000. The fitness effects of spontaneous mutations in Caenorhabditis elegans. Evolution 54:1234-1246.
-
(2000)
Evolution
, vol.54
, pp. 1234-1246
-
-
Vassilieva, L.L.1
Hook, A.M.2
Lynch, M.3
-
54
-
-
0025588451
-
Quantitative variation in finite parthenogenetic populations: what stops Muller's ratchet in the absence of recombination?
-
Wagner, G. P., and W. Gabriel. 1990. Quantitative variation in finite parthenogenetic populations: what stops Muller's ratchet in the absence of recombination? Evolution 44:715-731.
-
(1990)
Evolution
, vol.44
, pp. 715-731
-
-
Wagner, G.P.1
Gabriel, W.2
-
55
-
-
41349102014
-
Pleiotropic scaling of gene effects and the 'cost of complexity'
-
Wagner, G. P., J. P. Kenney-Hunt, M. Pavlicev, J. R. Peck, D. Waxman, and J. M. Cheverud. 2008. Pleiotropic scaling of gene effects and the 'cost of complexity'. Nature 452:470-472.
-
(2008)
Nature
, vol.452
, pp. 470-472
-
-
Wagner, G.P.1
Kenney-Hunt, J.P.2
Pavlicev, M.3
Peck, J.R.4
Waxman, D.5
Cheverud, J.M.6
-
56
-
-
33645666942
-
Darwinian evolution can follow only very few mutational paths to fitter proteins. 2006
-
Weinreich, D. M., N. F. Delaney, M. A. DePristo, and D. L. Hartl. 2006. Darwinian evolution can follow only very few mutational paths to fitter proteins. 2006. Science 312:111-114.
-
(2006)
Science
, vol.312
, pp. 111-114
-
-
Weinreich, D.M.1
Delaney, N.F.2
DePristo, M.A.3
Hartl, D.L.4
-
57
-
-
0043286749
-
Modularity and the cost of complexity
-
Welch, J., and D. Waxman. 2003. Modularity and the cost of complexity. Evolution 57:1723-1734.
-
(2003)
Evolution
, vol.57
, pp. 1723-1734
-
-
Welch, J.1
Waxman, D.2
-
58
-
-
0034515647
-
Fixation of new alleles and extinction of small populations: drift load, beneficial alleles, and sexual selection
-
Whitlock, M. 2000. Fixation of new alleles and extinction of small populations: drift load, beneficial alleles, and sexual selection. Evolution 54:1855-1861.
-
(2000)
Evolution
, vol.54
, pp. 1855-1861
-
-
Whitlock, M.1
-
59
-
-
0038526273
-
The critical effective size of a population with deleterious and compensatory mutations
-
Whitlock, M. C., C. K. Griswold, and A. D. Peters. 2003. The critical effective size of a population with deleterious and compensatory mutations. Annales Zoologici Fennici. 40:169-183.
-
(2003)
Annales Zoologici Fennici.
, vol.40
, pp. 169-183
-
-
Whitlock, M.C.1
Griswold, C.K.2
Peters, A.D.3
-
60
-
-
0004252445
-
-
4th ed. Prentice Hall, Upper Saddle River, NJ.
-
Zar, J. H. 1999. Biostatistical analysis. 4th ed. Prentice Hall, Upper Saddle River, NJ.
-
(1999)
Biostatistical analysis
-
-
Zar, J.H.1
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