-
1
-
-
65549101705
-
TEclass - a tool for automated classification of unknown eukaryotic transposable elements
-
Abrusan, G., Grundmann, N., DeMester, L. & Makalowski, W. (2009) TEclass - a tool for automated classification of unknown eukaryotic transposable elements. Bioinformatics 25, 1329-1330.
-
(2009)
Bioinformatics
, vol.25
, pp. 1329-1330
-
-
Abrusan, G.1
Grundmann, N.2
DeMester, L.3
Makalowski, W.4
-
2
-
-
36749037521
-
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
-
Aravin, A.A., Hannon, G.J. & Brennecke, J. (2007a) The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318, 761-764.
-
(2007)
Science
, vol.318
, pp. 761-764
-
-
Aravin, A.A.1
Hannon, G.J.2
Brennecke, J.3
-
3
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
Aravin, A.A., Sachidanandam, R., Girard, A., Fejes-Toth, K. & Hannon, G.J. (2007b) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316, 744-747.
-
(2007)
Science
, vol.316
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
Hannon, G.J.5
-
4
-
-
0037312932
-
Retroelements containing introns in diverse invertebrate taxa
-
Arkhipova, I.R., Pyatkov, K.I., Meselson, M. & Evgen'ev, M.B. (2003) Retroelements containing introns in diverse invertebrate taxa. Nat. Genet. 33, 123-124.
-
(2003)
Nat. Genet.
, vol.33
, pp. 123-124
-
-
Arkhipova, I.R.1
Pyatkov, K.I.2
Meselson, M.3
Evgen'ev, M.B.4
-
5
-
-
77956352772
-
Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons
-
Bao, W., Kapitonov, V.V. & Jurka, J. (2010) Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mobile DNA 1, 3.
-
(2010)
Mobile DNA
, vol.1
, pp. 3
-
-
Bao, W.1
Kapitonov, V.V.2
Jurka, J.3
-
6
-
-
21244497830
-
Novel relationships among DNA methylation, histone modifications and gene expression in Ascobolus
-
Barra, J.L., Holmes, A.M., Gregoire, A., Rossignol, J.L. & Faugeron, G. (2005) Novel relationships among DNA methylation, histone modifications and gene expression in Ascobolus. Mol. Microbiol. 57, 180-195.
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 180-195
-
-
Barra, J.L.1
Holmes, A.M.2
Gregoire, A.3
Rossignol, J.L.4
Faugeron, G.5
-
7
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
Berretta, J., Pinskaya, M. & Morillon, A. (2008) A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev. 22, 615-626.
-
(2008)
Genes Dev.
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
8
-
-
0026481992
-
Frequent transpositions of Drosophila melanogaster HeT-A transposable elements to receding chromosome ends
-
Biessmann, H., Champion, L.E., O'Hair, M., Ikenaga, K., Kasravi, B. & Mason, J.M. (1992) Frequent transpositions of Drosophila melanogaster HeT-A transposable elements to receding chromosome ends. EMBO J. 11, 4459-4469.
-
(1992)
EMBO J.
, vol.11
, pp. 4459-4469
-
-
Biessmann, H.1
Champion, L.E.2
O'Hair, M.3
Ikenaga, K.4
Kasravi, B.5
Mason, J.M.6
-
9
-
-
31544468112
-
RNAi: a defensive RNA-silencing against viruses and transposable elements
-
Buchon, N. & Vaury, C. (2006) RNAi: a defensive RNA-silencing against viruses and transposable elements. Heredity 96, 195-202.
-
(2006)
Heredity
, vol.96
, pp. 195-202
-
-
Buchon, N.1
Vaury, C.2
-
10
-
-
4344651631
-
Retroelements and formation of chimeric retrogenes
-
Buzdin, A.A. (2004) Retroelements and formation of chimeric retrogenes. Cell. Mol. Life Sci. 61, 2046-2059.
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 2046-2059
-
-
Buzdin, A.A.1
-
11
-
-
38549152196
-
Host genome surveillance for retrotransposons by transposon-derived proteins
-
Cam, H.P., Noma, K., Ebina, H., Levin, H.L. & & Grewal, S.I. (2008) Host genome surveillance for retrotransposons by transposon-derived proteins. Nature 451, 431-436.
-
(2008)
Nature
, vol.451
, pp. 431-436
-
-
Cam, H.P.1
Noma, K.2
Ebina, H.3
Levin, H.L.4
Grewal, S.I.5
-
12
-
-
0024361901
-
Repeat-induced G-C to A-T mutations in Neurospora
-
Cambareri, E.B., Jensen, B.C., Schabtach, E. & Selker, E.U. (1989) Repeat-induced G-C to A-T mutations in Neurospora. Science 244, 1571-1575.
-
(1989)
Science
, vol.244
, pp. 1571-1575
-
-
Cambareri, E.B.1
Jensen, B.C.2
Schabtach, E.3
Selker, E.U.4
-
13
-
-
0022157359
-
Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence
-
Cappello, J., Handelsman, K. & Lodish, H.F. (1985) Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence. Cell 43, 105-115.
-
(1985)
Cell
, vol.43
, pp. 105-115
-
-
Cappello, J.1
Handelsman, K.2
Lodish, H.F.3
-
14
-
-
33947720638
-
MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline
-
Carmell, M.A., Girard, A., van de Kant, H.J., Bourc'his, D., Bestor, T.H., de Rooij, D.G. & Hannon, G.J. (2007) MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline. Dev. Cell 12, 503-514.
-
(2007)
Dev. Cell
, vol.12
, pp. 503-514
-
-
Carmell, M.A.1
Girard, A.2
van de Kant, H.J.3
Bourc'his, D.4
Bestor, T.H.5
de Rooij, D.G.6
Hannon, G.J.7
-
15
-
-
38349103460
-
Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals
-
Casola, C., Hucks, D. & Feschotte, C. (2008) Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals. Mol. Biol. Evol. 25, 29-41.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 29-41
-
-
Casola, C.1
Hucks, D.2
Feschotte, C.3
-
16
-
-
17644380628
-
Small interfering RNAs that trigger posttranscriptional gene silencing are not required for the histone H3 Lys9 methylation necessary for transgenic tandem repeat stabilization in Neurospora crassa
-
Chicas, A., Forrest, E.C., Sepich, S., Cogoni, C. & Macino, G. (2005) Small interfering RNAs that trigger posttranscriptional gene silencing are not required for the histone H3 Lys9 methylation necessary for transgenic tandem repeat stabilization in Neurospora crassa. Mol. Cell. Biol. 25, 3793-3801.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 3793-3801
-
-
Chicas, A.1
Forrest, E.C.2
Sepich, S.3
Cogoni, C.4
Macino, G.5
-
17
-
-
34247854158
-
Cis-regulatory elements in the Accord retrotransposon result in tissue-specific expression of the Drosophila melanogaster insecticide resistance gene Cyp6g1
-
Chung, H., Bogwitz, M.R., McCart, C., Andrianopoulos, A., Ffrench-Constant, R.H., Batterham, P. & Daborn, P.J. (2007) Cis-regulatory elements in the Accord retrotransposon result in tissue-specific expression of the Drosophila melanogaster insecticide resistance gene Cyp6g1. Genetics 175, 1071-1077.
-
(2007)
Genetics
, vol.175
, pp. 1071-1077
-
-
Chung, H.1
Bogwitz, M.R.2
McCart, C.3
Andrianopoulos, A.4
Ffrench-Constant, R.H.5
Batterham, P.6
Daborn, P.J.7
-
18
-
-
70350232064
-
Endogenous retroviral LTRs as promoters for human genes: a critical assessment
-
Cohen, C.J., Lock, W.M. & Mager, D.L. (2009) Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene 448, 105-114.
-
(2009)
Gene
, vol.448
, pp. 105-114
-
-
Cohen, C.J.1
Lock, W.M.2
Mager, D.L.3
-
19
-
-
38549133553
-
Human cis natural antisense transcripts initiated by transposable elements
-
Conley, A.B., Miller, W.J. & Jordan, I.K. (2008) Human cis natural antisense transcripts initiated by transposable elements. Trends Genet. 24, 53-56.
-
(2008)
Trends Genet.
, vol.24
, pp. 53-56
-
-
Conley, A.B.1
Miller, W.J.2
Jordan, I.K.3
-
20
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux, R. & Batzer, M.A. (2009) The impact of retrotransposons on human genome evolution. Nat. Rev. Genet. 10, 691-703.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
21
-
-
0025093426
-
Evidence for horizontal transmission of the P transposable element between Drosophila species
-
Daniels, S.B., Peterson, K.R., Strausbaugh, L.D., Kidwell, M.G. & Chovnick, A. (1990) Evidence for horizontal transmission of the P transposable element between Drosophila species. Genetics 124, 339-355.
-
(1990)
Genetics
, vol.124
, pp. 339-355
-
-
Daniels, S.B.1
Peterson, K.R.2
Strausbaugh, L.D.3
Kidwell, M.G.4
Chovnick, A.5
-
22
-
-
0023279043
-
Neural BC1 RNA: cDNA clones reveal nonrepetitive sequence content
-
DeChiara, T.M. & Brosius, J. (1987) Neural BC1 RNA: cDNA clones reveal nonrepetitive sequence content. Proc. Natl Acad. Sci. USA 84, 2624-2628.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 2624-2628
-
-
DeChiara, T.M.1
Brosius, J.2
-
23
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux, M., Esnault, C. & Heidmann, T. (2003) LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35, 41-48.
-
(2003)
Nat. Genet.
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
24
-
-
72449159549
-
Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA
-
Djupedal, I., Kos-Braun, I.C., Mosher, R.A., Söderholm, N., Simmer, F., Hardcastle, T.J., Fender, A., Heidrich, N., Kagansky, A., Bayne, E., Wagner, E.G., Baulcombe, D.C., Allshire, R.C. & Ekwall, K. (2009) Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA. EMBO J. 28, 3832-3844.
-
(2009)
EMBO J.
, vol.28
, pp. 3832-3844
-
-
Djupedal, I.1
Kos-Braun, I.C.2
Mosher, R.A.3
Söderholm, N.4
Simmer, F.5
Hardcastle, T.J.6
Fender, A.7
Heidrich, N.8
Kagansky, A.9
Bayne, E.10
Wagner, E.G.11
Baulcombe, D.C.12
Allshire, R.C.13
Ekwall, K.14
-
25
-
-
34548694520
-
Virulence genes and the evolution of host specificity in plant-pathogenic fungi
-
van der Does, H.C. & Rep, M. (2007) Virulence genes and the evolution of host specificity in plant-pathogenic fungi. Mol. Plant Microbe Interact. 20, 1175-1182.
-
(2007)
Mol. Plant Microbe Interact.
, vol.20
, pp. 1175-1182
-
-
van der Does, H.C.1
Rep, M.2
-
26
-
-
0028286165
-
Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila
-
Dorer, D.R. & Henikoff, S. (1994) Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila. Cell 77, 993-1002.
-
(1994)
Cell
, vol.77
, pp. 993-1002
-
-
Dorer, D.R.1
Henikoff, S.2
-
27
-
-
32444436122
-
Transcription of two human genes from a bidirectional endogenous retrovirus promoter
-
Dunn, C.A., Romanish, M.T., Gutierrez, L.E., van de Lagemaat, L.N. & Mager, D.L. (2006) Transcription of two human genes from a bidirectional endogenous retrovirus promoter. Gene 366, 335-342.
-
(2006)
Gene
, vol.366
, pp. 335-342
-
-
Dunn, C.A.1
Romanish, M.T.2
Gutierrez, L.E.3
van de Lagemaat, L.N.4
Mager, D.L.5
-
28
-
-
0025103072
-
High-frequency P element loss in Drosophila is homolog dependent
-
Engels, W.R., Johnson-Schlitz, D.M., Eggleston, W.B. & Sved, J. (1990) High-frequency P element loss in Drosophila is homolog dependent. Cell 62, 515-525.
-
(1990)
Cell
, vol.62
, pp. 515-525
-
-
Engels, W.R.1
Johnson-Schlitz, D.M.2
Eggleston, W.B.3
Sved, J.4
-
29
-
-
23844456247
-
Penelope-like elements - a new class of retroelements: distribution, function and possible evolutionary significance
-
Evgen'ev, M.B. & Arkhipova, I.R. (2005) Penelope-like elements - a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet. Genome Res. 110, 510-521.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 510-521
-
-
Evgen'ev, M.B.1
Arkhipova, I.R.2
-
30
-
-
0031021619
-
Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis
-
Evgen'ev, M.B., Zelentsova, H., Shostak, N., Kozitsina, M., Barskyi, V., Lankenau, D.H. & Corces, V.G. (1997) Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis. Proc. Natl Acad. Sci. USA 94, 196-201.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 196-201
-
-
Evgen'ev, M.B.1
Zelentsova, H.2
Shostak, N.3
Kozitsina, M.4
Barskyi, V.5
Lankenau, D.H.6
Corces, V.G.7
-
31
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner, G.J., Kimura, Y., Daub, C.O., et al. (2009) The regulated retrotransposon transcriptome of mammalian cells. Nat. Genet. 41, 563-571.
-
(2009)
Nat. Genet.
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
-
32
-
-
0028102792
-
Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides
-
Felder, H., Herzceg, A., de Chastonay, Y., Aeby, P., Tobler, H. & Muller, F. (1994) Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides. Gene 149, 219-225.
-
(1994)
Gene
, vol.149
, pp. 219-225
-
-
Felder, H.1
Herzceg, A.2
de Chastonay, Y.3
Aeby, P.4
Tobler, H.5
Muller, F.6
-
33
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
Feschotte, C. (2008) Transposable elements and the evolution of regulatory networks. Nat. Rev. Genet. 9, 397-405.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 397-405
-
-
Feschotte, C.1
-
34
-
-
24644509691
-
Non-mammalian c-integrases are encoded by giant transposable elements
-
Feschotte, C. & Pritham, E.J. (2005) Non-mammalian c-integrases are encoded by giant transposable elements. Trends Genet. 21, 551-552.
-
(2005)
Trends Genet.
, vol.21
, pp. 551-552
-
-
Feschotte, C.1
Pritham, E.J.2
-
35
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte, C. & Pritham, E.J. (2007) DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 41, 331-368.
-
(2007)
Annu. Rev. Genet.
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
36
-
-
79953806385
-
A virophage at the origin of large DNA transposons
-
Fischer, M.G. & Suttle, C.A. (2011) A virophage at the origin of large DNA transposons. Science 332, 231-234.
-
(2011)
Science
, vol.332
, pp. 231-234
-
-
Fischer, M.G.1
Suttle, C.A.2
-
37
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae
-
Fleischmann, R.D., Adams, M.D., White, O., et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae. Science 269, 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
-
38
-
-
3042569778
-
DNA methylation is independent of RNA interference in Neurospora
-
Freitag, M., Lee, D.W., Kothe, G.O., Pratt, R.J., Aramayo, R. & Selker, E.U. (2004) DNA methylation is independent of RNA interference in Neurospora. Science 304, 1939.
-
(2004)
Science
, vol.304
, pp. 1939
-
-
Freitag, M.1
Lee, D.W.2
Kothe, G.O.3
Pratt, R.J.4
Aramayo, R.5
Selker, E.U.6
-
39
-
-
39949083375
-
Conserved themes in small-RNA-mediated transposon control
-
Girard, A. & Hannon, G.J. (2008) Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol. 18, 136-148.
-
(2008)
Trends Cell Biol.
, vol.18
, pp. 136-148
-
-
Girard, A.1
Hannon, G.J.2
-
40
-
-
0344012045
-
Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi
-
Goodwin, T.J., Butler, M.I. & Poulter, R.T. (2003) Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi. Microbiology 149, 3099-3109.
-
(2003)
Microbiology
, vol.149
, pp. 3099-3109
-
-
Goodwin, T.J.1
Butler, M.I.2
Poulter, R.T.3
-
41
-
-
0034748919
-
The DIRS1 group of retrotransposons
-
Goodwin, T.J. & Poulter, R.T. (2001) The DIRS1 group of retrotransposons. Mol. Biol. Evol. 18, 2067-2082.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 2067-2082
-
-
Goodwin, T.J.1
Poulter, R.T.2
-
42
-
-
1842609646
-
A new group of tyrosine recombinase-encoding retrotransposons
-
Goodwin, T.J. & Poulter, R.T. (2004) A new group of tyrosine recombinase-encoding retrotransposons. Mol. Biol. Evol. 21, 746-759.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 746-759
-
-
Goodwin, T.J.1
Poulter, R.T.2
-
43
-
-
0024339604
-
Targeted transformation of Ascobolus immersus and de novo methylation of the resulting duplicated DNA sequences
-
Goyon, C. & Faugeron, G. (1989) Targeted transformation of Ascobolus immersus and de novo methylation of the resulting duplicated DNA sequences. Mol. Cell. Biol. 9, 2818-2827.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 2818-2827
-
-
Goyon, C.1
Faugeron, G.2
-
44
-
-
77952236323
-
RNAi-dependent formation of heterochromatin and its diverse functions
-
Grewal, S.I. (2010) RNAi-dependent formation of heterochromatin and its diverse functions. Curr. Opin. Genet. Dev. 20, 134-141.
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 134-141
-
-
Grewal, S.I.1
-
45
-
-
76749104253
-
Dicer-independent primal RNAs trigger RNAi and heterochromatin formation
-
Halic, M. & Moazed, D. (2010) Dicer-independent primal RNAs trigger RNAi and heterochromatin formation. Cell 140, 504-516.
-
(2010)
Cell
, vol.140
, pp. 504-516
-
-
Halic, M.1
Moazed, D.2
-
46
-
-
58849123176
-
Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter
-
Hayashi, K. & Yoshida, H. (2009) Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter. Plant J. 57, 413-425.
-
(2009)
Plant J.
, vol.57
, pp. 413-425
-
-
Hayashi, K.1
Yoshida, H.2
-
47
-
-
0028841406
-
The pvB370 BamHI satellite DNA family of the Drosophila virilis group and its evolutionary relation to mobile dispersed genetic pDv elements
-
Heikkinen, E., Launonen, V., Muller, E. & Bachmann, L. (1995) The pvB370 BamHI satellite DNA family of the Drosophila virilis group and its evolutionary relation to mobile dispersed genetic pDv elements. J. Mol. Evol. 41, 604-614.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 604-614
-
-
Heikkinen, E.1
Launonen, V.2
Muller, E.3
Bachmann, L.4
-
48
-
-
2542577358
-
Genetics and epigenetics in flower pigmentation associated with transposable elements in morning glories
-
Iida, S., Morita, Y., Choi, J.D., Park, K.I. & Hoshino, A. (2004) Genetics and epigenetics in flower pigmentation associated with transposable elements in morning glories. Adv. Biophys. 38, 141-159.
-
(2004)
Adv. Biophys.
, vol.38
, pp. 141-159
-
-
Iida, S.1
Morita, Y.2
Choi, J.D.3
Park, K.I.4
Hoshino, A.5
-
49
-
-
12144289862
-
From silencing to gene expression: real-time analysis in single cells
-
Janicki, S.M., Tsukamoto, T., Salghetti, S.E., Tansey, W.P., Sachidanandam, R., Prasanth, K.V., Ried, T., Shav-Tal, Y., Bertrand, E., Singer, R.H. & Spector, D.L. (2004) From silencing to gene expression: real-time analysis in single cells. Cell 116, 683-698.
-
(2004)
Cell
, vol.116
, pp. 683-698
-
-
Janicki, S.M.1
Tsukamoto, T.2
Salghetti, S.E.3
Tansey, W.P.4
Sachidanandam, R.5
Prasanth, K.V.6
Ried, T.7
Shav-Tal, Y.8
Bertrand, E.9
Singer, R.H.10
Spector, D.L.11
-
50
-
-
0346306089
-
A molecular view of plant centromeres
-
Jiang, J., Birchler, J.A., Parrott, W.A. & Dawe, R.K. (2003) A molecular view of plant centromeres. Trends Plant Sci. 8, 570-575.
-
(2003)
Trends Plant Sci.
, vol.8
, pp. 570-575
-
-
Jiang, J.1
Birchler, J.A.2
Parrott, W.A.3
Dawe, R.K.4
-
51
-
-
1542647343
-
Maize centromeres: organization and functional adaptation in the genetic background of oat
-
Jin, W., Melo, J.R., Nagaki, K., Talbert, P.B., Henikoff, S., Dawe, R.K. & Jiang, J. (2004) Maize centromeres: organization and functional adaptation in the genetic background of oat. Plant Cell 16, 571-581.
-
(2004)
Plant Cell
, vol.16
, pp. 571-581
-
-
Jin, W.1
Melo, J.R.2
Nagaki, K.3
Talbert, P.B.4
Henikoff, S.5
Dawe, R.K.6
Jiang, J.7
-
52
-
-
0036849412
-
LINEs mobilize SINEs in the eel through a shared 3' sequence
-
Kajikawa, M. & Okada, N. (2002) LINEs mobilize SINEs in the eel through a shared 3' sequence. Cell 111, 433-444.
-
(2002)
Cell
, vol.111
, pp. 433-444
-
-
Kajikawa, M.1
Okada, N.2
-
53
-
-
0033288597
-
Molecular paleontology of transposable elements from Arabidopsis thaliana
-
Kapitonov, V.V. & Jurka, J. (1999) Molecular paleontology of transposable elements from Arabidopsis thaliana. Genetica 107, 27-37.
-
(1999)
Genetica
, vol.107
, pp. 27-37
-
-
Kapitonov, V.V.1
Jurka, J.2
-
54
-
-
0035902449
-
Rolling-circle transposons in eukaryotes
-
Kapitonov, V.V. & Jurka, J. (2001) Rolling-circle transposons in eukaryotes. Proc. Natl Acad. Sci. USA 98, 8714-8719.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 8714-8719
-
-
Kapitonov, V.V.1
Jurka, J.2
-
55
-
-
22744445703
-
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons
-
Kapitonov, V.V. & Jurka, J. (2005) RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol. 3, e181.
-
(2005)
PLoS Biol.
, vol.3
-
-
Kapitonov, V.V.1
Jurka, J.2
-
56
-
-
33645227457
-
Self-synthesizing DNA transposons in eukaryotes
-
Kapitonov, V.V. & Jurka, J. (2006) Self-synthesizing DNA transposons in eukaryotes. Proc. Natl Acad. Sci. USA 103, 4540-4545.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4540-4545
-
-
Kapitonov, V.V.1
Jurka, J.2
-
57
-
-
34848876954
-
Helitrons on a roll: eukaryotic rolling-circle transposons
-
Kapitonov, V.V. & Jurka, J. (2007) Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet. 23, 521-529.
-
(2007)
Trends Genet.
, vol.23
, pp. 521-529
-
-
Kapitonov, V.V.1
Jurka, J.2
-
58
-
-
42349111552
-
A universal classification of eukaryotic transposable elements implemented in Repbase
-
author reply 414.
-
Kapitonov, V.V. & Jurka, J. (2008) A universal classification of eukaryotic transposable elements implemented in Repbase. Nat. Rev. Genet. 9, 411-412; author reply 414.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 411-412
-
-
Kapitonov, V.V.1
Jurka, J.2
-
59
-
-
8544225783
-
Epigenetic control of CACTA transposon mobility in Arabidopsis thaliana
-
Kato, M., Takashima, K. & Kakutani, T. (2004) Epigenetic control of CACTA transposon mobility in Arabidopsis thaliana. Genetics 168, 961-969.
-
(2004)
Genetics
, vol.168
, pp. 961-969
-
-
Kato, M.1
Takashima, K.2
Kakutani, T.3
-
60
-
-
0028053175
-
Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster
-
Kim, A., Terzian, C., Santamaria, P., Pelisson, A., Purd'homme, N. & Bucheton, A. (1994a) Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster. Proc. Natl Acad. Sci. USA 91, 1285-1289.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 1285-1289
-
-
Kim, A.1
Terzian, C.2
Santamaria, P.3
Pelisson, A.4
Purd'homme, N.5
Bucheton, A.6
-
61
-
-
0028351915
-
Rodent BC1 RNA gene as a master gene for ID element amplification
-
Kim, J., Martignetti, J.A., Shen, M.R., Brosius, J. & Deininger, P. (1994b) Rodent BC1 RNA gene as a master gene for ID element amplification. Proc. Natl Acad. Sci. USA 91, 3607-3611.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 3607-3611
-
-
Kim, J.1
Martignetti, J.A.2
Shen, M.R.3
Brosius, J.4
Deininger, P.5
-
62
-
-
0031660925
-
Convergent transcription units and their promoters at both ends of pot2, an inverted repeat transposon from the rice blast fungus
-
Kimura, M. & Yamaguchi, I. (1998) Convergent transcription units and their promoters at both ends of pot2, an inverted repeat transposon from the rice blast fungus. J. Biochem. 124, 268-273.
-
(1998)
J. Biochem.
, vol.124
, pp. 268-273
-
-
Kimura, M.1
Yamaguchi, I.2
-
63
-
-
41649116098
-
DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
-
Kuramochi-Miyagawa, S., Watanabe, T., Gotoh, K., et al. (2008) DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. Genes Dev. 22, 908-917.
-
(2008)
Genes Dev.
, vol.22
, pp. 908-917
-
-
Kuramochi-Miyagawa, S.1
Watanabe, T.2
Gotoh, K.3
-
64
-
-
21144454436
-
Gene movement by Helitron transposons contributes to the haplotype variability of maize
-
Lai, J., Li, Y., Messing, J. & Dooner, H.K. (2005) Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc. Natl Acad. Sci. USA 102, 9068-9073.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 9068-9073
-
-
Lai, J.1
Li, Y.2
Messing, J.3
Dooner, H.K.4
-
65
-
-
0037327353
-
The maize genome contains a helitron insertion
-
Lal, S.K., Giroux, M.J., Brendel, V., Vallejos, C.E. & Hannah, L.C. (2003) The maize genome contains a helitron insertion. Plant Cell 15, 381-391.
-
(2003)
Plant Cell
, vol.15
, pp. 381-391
-
-
Lal, S.K.1
Giroux, M.J.2
Brendel, V.3
Vallejos, C.E.4
Hannah, L.C.5
-
66
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., Linton, L.M., Birren, B., et al. (2001) Initial sequencing and analysis of the human genome. Nature 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
67
-
-
0033832831
-
Retrotransposon evolution in diverse plant genomes
-
Langdon, T., Seago, C., Mende, M., Leggett, M., Thomas, H., Forster, J.W., Jones, R.N. & Jenkins, G. (2000) Retrotransposon evolution in diverse plant genomes. Genetics 156, 313-325.
-
(2000)
Genetics
, vol.156
, pp. 313-325
-
-
Langdon, T.1
Seago, C.2
Mende, M.3
Leggett, M.4
Thomas, H.5
Forster, J.W.6
Jones, R.N.7
Jenkins, G.8
-
68
-
-
0028349604
-
The Drosophila micropia retrotransposon encodes a testis-specific antisense RNA complementary to reverse transcriptase
-
Lankenau, S., Corces, V.G. & Lankenau, D.H. (1994) The Drosophila micropia retrotransposon encodes a testis-specific antisense RNA complementary to reverse transcriptase. Mol. Cell. Biol. 14, 1764-1775.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 1764-1775
-
-
Lankenau, S.1
Corces, V.G.2
Lankenau, D.H.3
-
69
-
-
0032499714
-
SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein
-
Laten, H.M., Majumdar, A. & Gaucher, E.A. (1998) SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein. Proc. Natl Acad. Sci. USA 95, 6897-6902.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 6897-6902
-
-
Laten, H.M.1
Majumdar, A.2
Gaucher, E.A.3
-
70
-
-
84887212434
-
Evidence for co-evolution between human microRNAs and Alu-repeats
-
Lehnert, S., Van Loo, P., Thilakarathne, P.J., Marynen, P., Verbeke, G. & Schuit, F.C. (2009) Evidence for co-evolution between human microRNAs and Alu-repeats. PLoS ONE 4, e4456.
-
(2009)
PLoS ONE
, vol.4
-
-
Lehnert, S.1
Van Loo, P.2
Thilakarathne, P.J.3
Marynen, P.4
Verbeke, G.5
Schuit, F.C.6
-
71
-
-
0027145631
-
Transposons in place of telomeric repeats at a Drosophila telomere
-
Levis, R.W., Ganesan, R., Houtchens, K., Tolar, L.A. & Sheen, F.M. (1993) Transposons in place of telomeric repeats at a Drosophila telomere. Cell 75, 1083-1093.
-
(1993)
Cell
, vol.75
, pp. 1083-1093
-
-
Levis, R.W.1
Ganesan, R.2
Houtchens, K.3
Tolar, L.A.4
Sheen, F.M.5
-
72
-
-
61949250367
-
Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa
-
Lewis, Z.A., Honda, S., Khlafallah, T.K., Jeffress, J.K., Freitag, M., Mohn, F., Schubeler, D. & Selker, E.U. (2009) Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa. Genome Res. 19, 427-437.
-
(2009)
Genome Res.
, vol.19
, pp. 427-437
-
-
Lewis, Z.A.1
Honda, S.2
Khlafallah, T.K.3
Jeffress, J.K.4
Freitag, M.5
Mohn, F.6
Schubeler, D.7
Selker, E.U.8
-
73
-
-
0032498902
-
Interphase cell cycle dynamics of a late-replicating, heterochromatic homogeneously staining region: precise choreography of condensation/decondensation and nuclear positioning
-
Li, G., Sudlow, G. & Belmont, A.S. (1998) Interphase cell cycle dynamics of a late-replicating, heterochromatic homogeneously staining region: precise choreography of condensation/decondensation and nuclear positioning. J. Cell Biol. 140, 975-989.
-
(1998)
J. Cell Biol.
, vol.140
, pp. 975-989
-
-
Li, G.1
Sudlow, G.2
Belmont, A.S.3
-
74
-
-
8444242268
-
Sequence composition, organization, and evolution of the core Triticeae genome
-
Li, W., Zhang, P., Fellers, J.P., Friebe, B. & Gill, B.S. (2004) Sequence composition, organization, and evolution of the core Triticeae genome. Plant J. 40, 500-511.
-
(2004)
Plant J.
, vol.40
, pp. 500-511
-
-
Li, W.1
Zhang, P.2
Fellers, J.P.3
Friebe, B.4
Gill, B.S.5
-
75
-
-
42349090351
-
Translational control by a small RNA: dendritic BC1 RNA targets the eukaryotic initiation factor 4A helicase mechanism
-
Lin, D., Pestova, T.V., Hellen, C.U. & Tiedge, H. (2008) Translational control by a small RNA: dendritic BC1 RNA targets the eukaryotic initiation factor 4A helicase mechanism. Mol. Cell. Biol. 28, 3008-3019.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 3008-3019
-
-
Lin, D.1
Pestova, T.V.2
Hellen, C.U.3
Tiedge, H.4
-
76
-
-
0034856864
-
Capture of DNA sequences at double-strand breaks in mammalian chromosomes
-
Lin, Y. & Waldman, A.S. (2001) Capture of DNA sequences at double-strand breaks in mammalian chromosomes. Genetics 158, 1665-1674.
-
(2001)
Genetics
, vol.158
, pp. 1665-1674
-
-
Lin, Y.1
Waldman, A.S.2
-
77
-
-
4243085624
-
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
-
Lippman, Z., May, B., Yordan, C., Singer, T. & Martienssen, R. (2003) Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1, E67.
-
(2003)
PLoS Biol.
, vol.1
-
-
Lippman, Z.1
May, B.2
Yordan, C.3
Singer, T.4
Martienssen, R.5
-
78
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
Lowe, C.B., Bejerano, G. & Haussler, D. (2007) Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc. Natl Acad. Sci. USA 104, 8005-8010.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
79
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
-
Luan, D.D., Korman, M.H., Jakubczak, J.L. & Eickbush, T.H. (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72, 595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
80
-
-
0023298190
-
Molecular mechanisms for transposition of drug-resistance genes and other movable genetic elements
-
Lupski, J.R. (1987) Molecular mechanisms for transposition of drug-resistance genes and other movable genetic elements. Rev. Infect. Dis. 9, 357-368.
-
(1987)
Rev. Infect. Dis.
, vol.9
, pp. 357-368
-
-
Lupski, J.R.1
-
81
-
-
0033799581
-
Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses
-
Malik, H.S., Henikoff, S. & Eickbush, T.H. (2000) Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Res. 10, 1307-1318.
-
(2000)
Genome Res.
, vol.10
, pp. 1307-1318
-
-
Malik, H.S.1
Henikoff, S.2
Eickbush, T.H.3
-
82
-
-
0242298325
-
Maintenance of heterochromatin by RNA interference of tandem repeats
-
Martienssen, R. (2003) Maintenance of heterochromatin by RNA interference of tandem repeats. Nat. Genet. 35, 213-214.
-
(2003)
Nat. Genet.
, vol.35
, pp. 213-214
-
-
Martienssen, R.1
-
83
-
-
0028297168
-
Coordinate suppression of mutations caused by Robertson's mutator transposons in maize
-
Martienssen, R. & Baron, A. (1994) Coordinate suppression of mutations caused by Robertson's mutator transposons in maize. Genetics 136, 1157-1170.
-
(1994)
Genetics
, vol.136
, pp. 1157-1170
-
-
Martienssen, R.1
Baron, A.2
-
84
-
-
0027139397
-
BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element
-
Martignetti, J.A. & Brosius, J. (1993) BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element. Proc. Natl Acad. Sci. USA 90, 11563-11567.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 11563-11567
-
-
Martignetti, J.A.1
Brosius, J.2
-
85
-
-
0035163939
-
Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
-
Martin, S.L. & Bushman, F.D. (2001) Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol. 21, 467-475.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 467-475
-
-
Martin, S.L.1
Bushman, F.D.2
-
86
-
-
0034680599
-
Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1
-
Martin, S.L., Li, J. & Weisz, J.A. (2000) Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1. J. Mol. Biol. 304, 11-20.
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 11-20
-
-
Martin, S.L.1
Li, J.2
Weisz, J.A.3
-
87
-
-
79952017845
-
Telomeric and extra-telomeric roles for telomerase and the telomere-binding proteins
-
Martinez, P. & Blasco, M.A. (2011) Telomeric and extra-telomeric roles for telomerase and the telomere-binding proteins. Nat. Rev. Cancer 11, 161-176.
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 161-176
-
-
Martinez, P.1
Blasco, M.A.2
-
88
-
-
70349446101
-
Posttranslational interference of Ty1 retrotransposition by antisense RNAs
-
Matsuda, E. & Garfinkel, D.J. (2009) Posttranslational interference of Ty1 retrotransposition by antisense RNAs. Proc. Natl Acad. Sci. USA 106, 15657-15662.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 15657-15662
-
-
Matsuda, E.1
Garfinkel, D.J.2
-
89
-
-
34848904239
-
Targets of RNA-directed DNA methylation
-
Matzke, M., Kanno, T., Huettel, B., Daxinger, L. & Matzke, A.J. (2007) Targets of RNA-directed DNA methylation. Curr. Opin. Plant Biol. 10, 512-519.
-
(2007)
Curr. Opin. Plant Biol.
, vol.10
, pp. 512-519
-
-
Matzke, M.1
Kanno, T.2
Huettel, B.3
Daxinger, L.4
Matzke, A.J.5
-
90
-
-
72749127435
-
The origin and behavior of mutable loci in maize
-
McClintock, B. (1950) The origin and behavior of mutable loci in maize. Proc. Natl Acad. Sci. USA 36, 344-355.
-
(1950)
Proc. Natl Acad. Sci. USA
, vol.36
, pp. 344-355
-
-
McClintock, B.1
-
92
-
-
0034755894
-
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
-
Meyers, B.C., Tingey, S.V. & Morgante, M. (2001) Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res. 11, 1660-1676.
-
(2001)
Genome Res.
, vol.11
, pp. 1660-1676
-
-
Meyers, B.C.1
Tingey, S.V.2
Morgante, M.3
-
93
-
-
0025642432
-
Evidence for horizontal transmission of the mobile element jockey between distant Drosophila species
-
Mizrokhi, L.J. & Mazo, A.M. (1990) Evidence for horizontal transmission of the mobile element jockey between distant Drosophila species. Proc. Natl Acad. Sci. USA 87, 9216-9220.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 9216-9220
-
-
Mizrokhi, L.J.1
Mazo, A.M.2
-
94
-
-
0029970701
-
Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks
-
Moore, J.K. & Haber, J.E. (1996) Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks. Nature 383, 644-646.
-
(1996)
Nature
, vol.383
, pp. 644-646
-
-
Moore, J.K.1
Haber, J.E.2
-
95
-
-
0032751471
-
Epigenetic inheritance at the agouti locus in the mouse
-
Morgan, H.D., Sutherland, H.G., Martin, D.I. & Whitelaw, E. (1999) Epigenetic inheritance at the agouti locus in the mouse. Nat. Genet. 23, 314-318.
-
(1999)
Nat. Genet.
, vol.23
, pp. 314-318
-
-
Morgan, H.D.1
Sutherland, H.G.2
Martin, D.I.3
Whitelaw, E.4
-
96
-
-
0036613245
-
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
-
Morrish, T.A., Gilbert, N., Myers, J.S., Vincent, B.J., Stamato, T.D., Taccioli, G.E., Batzer, M.A. & Moran, J.V. (2002) DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat. Genet. 31, 159-165.
-
(2002)
Nat. Genet.
, vol.31
, pp. 159-165
-
-
Morrish, T.A.1
Gilbert, N.2
Myers, J.S.3
Vincent, B.J.4
Stamato, T.D.5
Taccioli, G.E.6
Batzer, M.A.7
Moran, J.V.8
-
97
-
-
0037295602
-
Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres
-
Nagaki, K., Song, J., Stupar, R.M., Parokonny, A.S., Yuan, Q., Ouyang, S., Liu, J., Hsiao, J., Jones, K.M., Dawe, R.K., Buell, C.R. & Jiang, J. (2003) Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres. Genetics 163, 759-770.
-
(2003)
Genetics
, vol.163
, pp. 759-770
-
-
Nagaki, K.1
Song, J.2
Stupar, R.M.3
Parokonny, A.S.4
Yuan, Q.5
Ouyang, S.6
Liu, J.7
Hsiao, J.8
Jones, K.M.9
Dawe, R.K.10
Buell, C.R.11
Jiang, J.12
-
98
-
-
0036251775
-
Many human genes are transcribed from the antisense promoter of L1 retrotransposon
-
Nigumann, P., Redik, K., Matlik, K. & Speek, M. (2002) Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics 79, 628-634.
-
(2002)
Genomics
, vol.79
, pp. 628-634
-
-
Nigumann, P.1
Redik, K.2
Matlik, K.3
Speek, M.4
-
99
-
-
10644221797
-
RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing
-
Noma, K., Sugiyama, T., Cam, H., Verdel, A., Zofall, M., Jia, S., Moazed, D. & Grewal, S.I. (2004) RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing. Nat. Genet. 36, 1174-1180.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1174-1180
-
-
Noma, K.1
Sugiyama, T.2
Cam, H.3
Verdel, A.4
Zofall, M.5
Jia, S.6
Moazed, D.7
Grewal, S.I.8
-
100
-
-
23844437243
-
SINEs and LINEs: symbionts of eukaryotic genomes with a common tail
-
Ohshima, K. & Okada, N. (2005) SINEs and LINEs: symbionts of eukaryotic genomes with a common tail. Cytogenet. Genome Res. 110, 475-490.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 475-490
-
-
Ohshima, K.1
Okada, N.2
-
101
-
-
0037049465
-
CENP-B box is required for de novo centromere chromatin assembly on human alphoid DNA
-
Ohzeki, J., Nakano, M., Okada, T. & Masumoto, H. (2002) CENP-B box is required for de novo centromere chromatin assembly on human alphoid DNA. J. Cell Biol. 159, 765-775.
-
(2002)
J. Cell Biol.
, vol.159
, pp. 765-775
-
-
Ohzeki, J.1
Nakano, M.2
Okada, T.3
Masumoto, H.4
-
102
-
-
31444445966
-
Retroposition of processed pseudogenes: the impact of RNA stability and translational control
-
Pavlicek, A., Gentles, A.J., Paces, J., Paces, V. & Jurka, J. (2006) Retroposition of processed pseudogenes: the impact of RNA stability and translational control. Trends Genet. 22, 69-73.
-
(2006)
Trends Genet.
, vol.22
, pp. 69-73
-
-
Pavlicek, A.1
Gentles, A.J.2
Paces, J.3
Paces, V.4
Jurka, J.5
-
103
-
-
34250729886
-
Origin and evolution of human microRNAs from transposable elements
-
Piriyapongsa, J., Marino-Ramirez, L. & Jordan, I.K. (2007) Origin and evolution of human microRNAs from transposable elements. Genetics 176, 1323-1337.
-
(2007)
Genetics
, vol.176
, pp. 1323-1337
-
-
Piriyapongsa, J.1
Marino-Ramirez, L.2
Jordan, I.K.3
-
104
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno, L., Salmena, L., Zhang, J., Carver, B., Haveman, W.J. & Pandolfi, P.P. (2010) A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 465, 1033-1038.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
105
-
-
23844559179
-
DIRS-1 and the other tyrosine recombinase retrotransposons
-
Poulter, R.T. & Goodwin, T.J. (2005) DIRS-1 and the other tyrosine recombinase retrotransposons. Cytogenet. Genome Res. 110, 575-588.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 575-588
-
-
Poulter, R.T.1
Goodwin, T.J.2
-
106
-
-
33846939973
-
Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
-
Pritham, E.J., Putliwala, T. & Feschotte, C. (2007) Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene 390, 3-17.
-
(2007)
Gene
, vol.390
, pp. 3-17
-
-
Pritham, E.J.1
Putliwala, T.2
Feschotte, C.3
-
107
-
-
6944240085
-
Reverse transcriptase and endonuclease activities encoded by Penelope-like retroelements
-
Pyatkov, K.I., Arkhipova, I.R., Malkova, N.V., Finnegan, D.J. & Evgen'ev, M.B. (2004) Reverse transcriptase and endonuclease activities encoded by Penelope-like retroelements. Proc. Natl Acad. Sci. USA 101, 14719-14724.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 14719-14724
-
-
Pyatkov, K.I.1
Arkhipova, I.R.2
Malkova, N.V.3
Finnegan, D.J.4
Evgen'ev, M.B.5
-
108
-
-
79951733484
-
Genome evolution: horizontal movements in the fungi
-
Richards, T.A. (2011) Genome evolution: horizontal movements in the fungi. Curr. Biol. 21, R166-R168.
-
(2011)
Curr. Biol.
, vol.21
-
-
Richards, T.A.1
-
109
-
-
0023644245
-
Rearrangement of duplicated DNA in specialized cells of Neurospora
-
Selker, E.U., Cambareri, E.B., Jensen, B.C. & Haack, K.R. (1987) Rearrangement of duplicated DNA in specialized cells of Neurospora. Cell 51, 741-752.
-
(1987)
Cell
, vol.51
, pp. 741-752
-
-
Selker, E.U.1
Cambareri, E.B.2
Jensen, B.C.3
Haack, K.R.4
-
110
-
-
13444267717
-
A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering
-
Shapiro, J. (2005) A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering. Gene 345, 91-100.
-
(2005)
Gene
, vol.345
, pp. 91-100
-
-
Shapiro, J.1
-
111
-
-
0014693351
-
Mutations caused by the insertion of genetic material into the galactose operon of Escherichia coli
-
Shapiro, J.A. (1969) Mutations caused by the insertion of genetic material into the galactose operon of Escherichia coli. J. Mol. Biol. 40, 93-105.
-
(1969)
J. Mol. Biol.
, vol.40
, pp. 93-105
-
-
Shapiro, J.A.1
-
112
-
-
0345306117
-
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
-
Sijen, T. & Plasterk, R.H. (2003) Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 426, 310-314.
-
(2003)
Nature
, vol.426
, pp. 310-314
-
-
Sijen, T.1
Plasterk, R.H.2
-
113
-
-
0029084897
-
DNA methylation associated with repeat-induced point mutation in Neurospora crassa
-
Singer, M.J., Marcotte, B.A. & Selker, E.U. (1995) DNA methylation associated with repeat-induced point mutation in Neurospora crassa. Mol. Cell. Biol. 15, 5586-5597.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 5586-5597
-
-
Singer, M.J.1
Marcotte, B.A.2
Selker, E.U.3
-
114
-
-
46749123801
-
How selfish retrotransposons are silenced in Drosophila germline and somatic cells
-
Siomi, M.C., Saito, K. & Siomi, H. (2008) How selfish retrotransposons are silenced in Drosophila germline and somatic cells. FEBS Lett. 582, 2473-2478.
-
(2008)
FEBS Lett.
, vol.582
, pp. 2473-2478
-
-
Siomi, M.C.1
Saito, K.2
Siomi, H.3
-
115
-
-
0242349693
-
Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays
-
Slotkin, R.K., Freeling, M. & Lisch, D. (2003) Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics 165, 781-797.
-
(2003)
Genetics
, vol.165
, pp. 781-797
-
-
Slotkin, R.K.1
Freeling, M.2
Lisch, D.3
-
116
-
-
20044378849
-
Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication
-
Slotkin, R.K., Freeling, M. & Lisch, D. (2005) Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat. Genet. 37, 641-644.
-
(2005)
Nat. Genet.
, vol.37
, pp. 641-644
-
-
Slotkin, R.K.1
Freeling, M.2
Lisch, D.3
-
117
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin, R.K. & Martienssen, R. (2007) Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 8, 272-285.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
118
-
-
19444367079
-
Mammalian microRNAs derived from genomic repeats
-
Smalheiser, N.R. & Torvik, V.I. (2005) Mammalian microRNAs derived from genomic repeats. Trends Genet. 21, 322-326.
-
(2005)
Trends Genet.
, vol.21
, pp. 322-326
-
-
Smalheiser, N.R.1
Torvik, V.I.2
-
119
-
-
33748577987
-
Alu elements within human mRNAs are probable microRNA targets
-
Smalheiser, N.R. & Torvik, V.I. (2006) Alu elements within human mRNAs are probable microRNA targets. Trends Genet. 22, 532-536.
-
(2006)
Trends Genet.
, vol.22
, pp. 532-536
-
-
Smalheiser, N.R.1
Torvik, V.I.2
-
120
-
-
0027992609
-
An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus
-
Song, S.U., Gerasimova, T., Kurkulos, M., Boeke, J.D. & Corces, V.G. (1994) An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev. 8, 2046-2057.
-
(1994)
Genes Dev.
, vol.8
, pp. 2046-2057
-
-
Song, S.U.1
Gerasimova, T.2
Kurkulos, M.3
Boeke, J.D.4
Corces, V.G.5
-
121
-
-
77958487981
-
Pervasive horizontal transfer of rolling-circle transposons among animals
-
Thomas, J., Schaack, S. & Pritham, E.J. (2010) Pervasive horizontal transfer of rolling-circle transposons among animals. Genome Biol. Evol. 2, 656-664.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 656-664
-
-
Thomas, J.1
Schaack, S.2
Pritham, E.J.3
-
122
-
-
0027299483
-
Primary structure, neural-specific expression, and dendritic location of human BC200 RNA
-
Tiedge, H., Chen, W. & Brosius, J. (1993) Primary structure, neural-specific expression, and dendritic location of human BC200 RNA. J. Neurosci. 13, 2382-2390.
-
(1993)
J. Neurosci.
, vol.13
, pp. 2382-2390
-
-
Tiedge, H.1
Chen, W.2
Brosius, J.3
-
123
-
-
0033672197
-
Visualization of gene activity in living cells
-
Tsukamoto, T., Hashiguchi, N., Janicki, S.M., Tumbar, T., Belmont, A.S. & Spector, D.L. (2000) Visualization of gene activity in living cells. Nat. Cell Biol. 2, 871-878.
-
(2000)
Nat. Cell Biol.
, vol.2
, pp. 871-878
-
-
Tsukamoto, T.1
Hashiguchi, N.2
Janicki, S.M.3
Tumbar, T.4
Belmont, A.S.5
Spector, D.L.6
-
124
-
-
0037072661
-
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
-
Volpe, T.A., Kidner, C., Hall, I.M., Teng, G., Grewal, S.I. & Martienssen, R.A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837.
-
(2002)
Science
, vol.297
, pp. 1833-1837
-
-
Volpe, T.A.1
Kidner, C.2
Hall, I.M.3
Teng, G.4
Grewal, S.I.5
Martienssen, R.A.6
-
125
-
-
33646881078
-
The assembly and maintenance of heterochromatin initiated by transgene repeats are independent of the RNA interference pathway in mammalian cells
-
Wang, F., Koyama, N., Nishida, H., Haraguchi, T., Reith, W. & Tsukamoto, T. (2006) The assembly and maintenance of heterochromatin initiated by transgene repeats are independent of the RNA interference pathway in mammalian cells. Mol. Cell. Biol. 26, 4028-4040.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 4028-4040
-
-
Wang, F.1
Koyama, N.2
Nishida, H.3
Haraguchi, T.4
Reith, W.5
Tsukamoto, T.6
-
126
-
-
0036894753
-
Dendritic BC1 RNA: functional role in regulation of translation initiation
-
Wang, H., Iacoangeli, A., Popp, S., Muslimov, I.A., Imataka, H., Sonenberg, N., Lomakin, I.B. & Tiedge, H. (2002) Dendritic BC1 RNA: functional role in regulation of translation initiation. J. Neurosci. 22, 10232-10241.
-
(2002)
J. Neurosci.
, vol.22
, pp. 10232-10241
-
-
Wang, H.1
Iacoangeli, A.2
Popp, S.3
Muslimov, I.A.4
Imataka, H.5
Sonenberg, N.6
Lomakin, I.B.7
Tiedge, H.8
-
127
-
-
36749061982
-
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
-
Wang, T., Zeng, J., Lowe, C.B., Sellers, R.G., Salama, S.R., Yang, M., Burgess, S.M., Brachmann, R.K. & Haussler, D. (2007) Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc. Natl Acad. Sci. USA 104, 18613-18618.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 18613-18618
-
-
Wang, T.1
Zeng, J.2
Lowe, C.B.3
Sellers, R.G.4
Salama, S.R.5
Yang, M.6
Burgess, S.M.7
Brachmann, R.K.8
Haussler, D.9
-
128
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe, T., Totoki, Y., Toyoda, A., Kaneda, M., Kuramochi-Miyagawa, S., Obata, Y., Chiba, H., Kohara, Y., Kono, T., Nakano, T., Surani, M.A., Sakaki, Y. & Sasaki, H. (2008) Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453, 539-543.
-
(2008)
Nature
, vol.453
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
Kaneda, M.4
Kuramochi-Miyagawa, S.5
Obata, Y.6
Chiba, H.7
Kohara, Y.8
Kono, T.9
Nakano, T.10
Surani, M.A.11
Sakaki, Y.12
Sasaki, H.13
-
129
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J.L., Capy, P., Chalhoub, B., Flavell, A., Leroy, P., Morgante, M., Panaud, O., Paux, E., SanMiguel, P. & Schulman, A.H. (2007) A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8, 973-982.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
Paux, E.11
SanMiguel, P.12
Schulman, A.H.13
-
130
-
-
0034858093
-
Reverse transcription of retroviruses and LTR retrotransposons
-
Wilhelm, M. & Wilhelm, F.X. (2001) Reverse transcription of retroviruses and LTR retrotransposons. Cell. Mol. Life Sci. 58, 1246-1262.
-
(2001)
Cell. Mol. Life Sci.
, vol.58
, pp. 1246-1262
-
-
Wilhelm, M.1
Wilhelm, F.X.2
-
131
-
-
7444271429
-
Evolutionary dynamics of transposable elements at the centromere
-
Wong, L.H. & Choo, K.H. (2004) Evolutionary dynamics of transposable elements at the centromere. Trends Genet. 20, 611-616.
-
(2004)
Trends Genet.
, vol.20
, pp. 611-616
-
-
Wong, L.H.1
Choo, K.H.2
-
132
-
-
0025006614
-
Origin and evolution of retroelements based upon their reverse transcriptase sequences
-
Xiong, Y. & Eickbush, T.H. (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9, 3353-3362.
-
(1990)
EMBO J.
, vol.9
, pp. 3353-3362
-
-
Xiong, Y.1
Eickbush, T.H.2
-
133
-
-
33748363713
-
L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
-
Yang, N. & Kazazian, H.H. (2006) L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. Nat. Struct. Mol. Biol. 13, 763-771.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 763-771
-
-
Yang, N.1
Kazazian, H.H.2
-
134
-
-
0346752110
-
Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome
-
Zhang, Z., Harrison, P.M., Liu, Y. & Gerstein, M. (2003) Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. Genome Res. 13, 2541-2558.
-
(2003)
Genome Res.
, vol.13
, pp. 2541-2558
-
-
Zhang, Z.1
Harrison, P.M.2
Liu, Y.3
Gerstein, M.4
-
135
-
-
0036847093
-
Centromeric retroelements and satellites interact with maize kinetochore protein CENH3
-
Zhong, C.X., Marshall, J.B., Topp, C., Mroczek, R., Kato, A., Nagaki, K., Birchler, J.A., Jiang, J. & Dawe, R.K. (2002) Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell 14, 2825-2836.
-
(2002)
Plant Cell
, vol.14
, pp. 2825-2836
-
-
Zhong, C.X.1
Marshall, J.B.2
Topp, C.3
Mroczek, R.4
Kato, A.5
Nagaki, K.6
Birchler, J.A.7
Jiang, J.8
Dawe, R.K.9
|