-
1
-
-
0003880161
-
-
Garland Publishing, New York
-
Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K., and Watson, J. 1994. Molecular biology of the cell. Garland Publishing, New York.
-
(1994)
Molecular Biology of the Cell
-
-
Alberts, B.1
Bray, D.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Watson, J.6
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0032512051
-
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
-
Andersson, S.G., Zomorodipour, A., Andersson, J.O., Sicheritz-Ponten, T., Alsmark, U.C., Podowski, R.M., Naslund, A.K., Eriksson, A.S., Winkler, H.H., and Kurland, C.G. 1998. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 396: 133-140.
-
(1998)
Nature
, vol.396
, pp. 133-140
-
-
Andersson, S.G.1
Zomorodipour, A.2
Andersson, J.O.3
Sicheritz-Ponten, T.4
Alsmark, U.C.5
Podowski, R.M.6
Naslund, A.K.7
Eriksson, A.S.8
Winkler, H.H.9
Kurland, C.G.10
-
4
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
5
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. 2000. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
6
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A. and Apweiler, R. 2000. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28: 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
7
-
-
0024711577
-
Members of the human glyceraldehyde-3-phosphate dehydrogenase-related gene family map to dispersed chromosomal locations
-
Benham, F.J. and Povey, S. 1989. Members of the human glyceraldehyde-3-phosphate dehydrogenase-related gene family map to dispersed chromosomal locations. Genomics 5: 209-214.
-
(1989)
Genomics
, vol.5
, pp. 209-214
-
-
Benham, F.J.1
Povey, S.2
-
8
-
-
0033999959
-
Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes
-
Bensasson, D., Zhang, D.X., and Hewitt, G.M. 2000. Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes. Mol. Biol. Evol. 17: 406-415.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 406-415
-
-
Bensasson, D.1
Zhang, D.X.2
Hewitt, G.M.3
-
9
-
-
0035140685
-
Genomic gigantism: DNA loss is slow in mountain grasshoppers
-
Bensasson, D., Petrov, D.A., Zhang, D.X., Hartl, D.L., and Hewitt, G.M. 2001. Genomic gigantism: DNA loss is slow in mountain grasshoppers. Mol. Biol. Evol. 18: 246-253.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 246-253
-
-
Bensasson, D.1
Petrov, D.A.2
Zhang, D.X.3
Hartl, D.L.4
Hewitt, G.M.5
-
10
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi, G. 2000. Isochores and the evolutionary genomics of vertebrates. Gene 241: 3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
11
-
-
0035802410
-
Misunderstandings about isochores. Part 1
-
Bernardi, G. 2001. Misunderstandings about isochores. Part 1. Gene 276: 3-13.
-
(2001)
Gene
, vol.276
, pp. 3-13
-
-
Bernardi, G.1
-
12
-
-
0035865238
-
Mining the draft human genome
-
Birney, E., Bateman, A., Clamp, M.E., and Hubbard, T.J. 2001. Mining the draft human genome. Nature 409: 827-828.
-
(2001)
Nature
, vol.409
, pp. 827-828
-
-
Birney, E.1
Bateman, A.2
Clamp, M.E.3
Hubbard, T.J.4
-
13
-
-
0035726788
-
Human myosin XVBP is a transcribed pseudogene
-
Boger, E.T., Sellers, J.R., and Friedman, T.B. 2001. Human myosin XVBP is a transcribed pseudogene. J. Muscle Res. Cell Motil. 22: 477-483.
-
(2001)
J. Muscle Res. Cell Motil.
, vol.22
, pp. 477-483
-
-
Boger, E.T.1
Sellers, J.R.2
Friedman, T.B.3
-
14
-
-
0030729630
-
Differential expression of the murine histone genes H3.3A and H3.3B
-
Bramlage, B., Kosciessa, U., and Doenecke, D. 1997. Differential expression of the murine histone genes H3.3A and H3.3B. Differentiation 62: 13-20.
-
(1997)
Differentiation
, vol.62
, pp. 13-20
-
-
Bramlage, B.1
Kosciessa, U.2
Doenecke, D.3
-
15
-
-
0027319656
-
Abundant adrenal-specific transcription of the human P450c21A "pseudogene"
-
Bristow, J., Gitelman, S.E., Tee, M.K., Staels, B., and Miller, W.L. 1993. Abundant adrenal-specific transcription of the human P450c21A "pseudogene". J. Biol. Chem. 268: 12919-12924.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 12919-12924
-
-
Bristow, J.1
Gitelman, S.E.2
Tee, M.K.3
Staels, B.4
Miller, W.L.5
-
16
-
-
0027203710
-
Expression of prohibitin in rat seminiferous epithelium
-
Choongkittaworn, N.M., Kim, K.H., Danner, D.B., and Griswold, M.D. 1993. Expression of prohibitin in rat seminiferous epithelium. Biol. Reprod. 49: 300-310.
-
(1993)
Biol. Reprod.
, vol.49
, pp. 300-310
-
-
Choongkittaworn, N.M.1
Kim, K.H.2
Danner, D.B.3
Griswold, M.D.4
-
17
-
-
0035931926
-
Massive gene decay in the leprosy bacillus
-
Cole, S.T., Eiglmeier, K., Parkhill, J., James, K.D., Thomson, N.R., Wheeler, P.R., Honore, N., Garnier, T., Churcher, C., Harris, D., et al. 2001. Massive gene decay in the leprosy bacillus. Nature 409: 1007-1011.
-
(2001)
Nature
, vol.409
, pp. 1007-1011
-
-
Cole, S.T.1
Eiglmeier, K.2
Parkhill, J.3
James, K.D.4
Thomson, N.R.5
Wheeler, P.R.6
Honore, N.7
Garnier, T.8
Churcher, C.9
Harris, D.10
-
18
-
-
0033178886
-
Intron-exon structures of eukaryotic model organisms
-
Deutsch, M. and Long, M. 1999. Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res. 27: 3219-3228.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3219-3228
-
-
Deutsch, M.1
Long, M.2
-
19
-
-
2942613694
-
The human L-threonine 3-dehydrogenase gene is an expressed pseudogene
-
Edgar, A.J. 2002. The human L-threonine 3-dehydrogenase gene is an expressed pseudogene. BMC Genet. 3: 18.
-
(2002)
BMC Genet.
, vol.3
, pp. 18
-
-
Edgar, A.J.1
-
20
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault, C., Maestre, J., and Heidmann, T. 2000. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 24: 363-367.
-
(2000)
Nat. Genet.
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
21
-
-
0024211779
-
The human somatic cytochrome c gene: Two classes of processed pseudogenes demarcate a period of rapid molecular evolution
-
Evans, M.J. and Scarpulla, R.C. 1988. The human somatic cytochrome c gene: Two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Proc. Natl. Acad. Sci. 85: 9625-9629.
-
(1988)
Proc. Natl. Acad. Sci.
, vol.85
, pp. 9625-9629
-
-
Evans, M.J.1
Scarpulla, R.C.2
-
22
-
-
0346445384
-
-
PHYLIP (Phylogeny Inference Package) version 3.5c, Distributed by the author. Department of Genetics, University of Washington, Seattle
-
Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c, Distributed by the author. Department of Genetics, University of Washington, Seattle.
-
(1993)
-
-
Felsenstein, J.1
-
23
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng, Q., Moran, J.V., Kazazian Jr., H.H., and Boeke, J.D. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87: 905-916.
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
24
-
-
0033522145
-
Transcriptional analysis of the PTEN/MMAC1 pseudogene, ψPTEN
-
Fujii, G.H., Morimoto, A.M., Berson, A.E., and Bolen, J.B. 1999. Transcriptional analysis of the PTEN/MMAC1 pseudogene, ψPTEN. Oncogene 18: 1765-1769.
-
(1999)
Oncogene
, vol.18
, pp. 1765-1769
-
-
Fujii, G.H.1
Morimoto, A.M.2
Berson, A.E.3
Bolen, J.B.4
-
25
-
-
0027771366
-
Concerted evolution in the GAPDH family of retrotransposed pseudogenes
-
Garcia-Meunier, P., Etienne-Julan, M., Fort, P., Piechaczyk, M., and Bonhomme, F. 1993. Concerted evolution in the GAPDH family of retrotransposed pseudogenes. Mamm. Genome 4: 695-703.
-
(1993)
Mamm. Genome
, vol.4
, pp. 695-703
-
-
Garcia-Meunier, P.1
Etienne-Julan, M.2
Fort, P.3
Piechaczyk, M.4
Bonhomme, F.5
-
26
-
-
0035049521
-
Genome-scale compositional comparisons in eukaryotes
-
Gentles, A.J. and Karlin, S. 2001. Genome-scale compositional comparisons in eukaryotes. Genome Res. 11: 540-546.
-
(2001)
Genome Res.
, vol.11
, pp. 540-546
-
-
Gentles, A.J.1
Karlin, S.2
-
27
-
-
0035001936
-
The complete human olfactory subgenome
-
Glusman, G., Yanai, L, Rubin, I., and Lancet, D. 2001. The complete human olfactory subgenome. Genome Res. 11: 685-702.
-
(2001)
Genome Res.
, vol.11
, pp. 685-702
-
-
Glusman, G.1
Yanai, L.2
Rubin, I.3
Lancet, D.4
-
28
-
-
0342858851
-
Nature and structure of human genes that generate retropseudogenes
-
Goncalves, I., Duret, L., and Mouchiroud, D. 2000. Nature and structure of human genes that generate retropseudogenes. Genome Res. 10: 672-678.
-
(2000)
Genome Res.
, vol.10
, pp. 672-678
-
-
Goncalves, I.1
Duret, L.2
Mouchiroud, D.3
-
29
-
-
0024505629
-
Deletions in processed pseudogenes accumulate faster in rodents than in humans
-
Graur, D., Shuali, Y., and Li, W.H. 1989. Deletions in processed pseudogenes accumulate faster in rodents than in humans. J. Mol. Evol. 28: 279-285.
-
(1989)
J. Mol. Evol.
, vol.28
, pp. 279-285
-
-
Graur, D.1
Shuali, Y.2
Li, W.H.3
-
30
-
-
0032033749
-
The human ortholog of rhesus mannose-binding protein-A gene is an expressed pseudogene that localizes to chromosome 10
-
Guo, N., Mogues, T., Weremowicz, S., Morton, C.C., and Sastry, K.N. 1998. The human ortholog of rhesus mannose-binding protein-A gene is an expressed pseudogene that localizes to chromosome 10. Mamm. Genome 9: 246-249.
-
(1998)
Mamm. Genome
, vol.9
, pp. 246-249
-
-
Guo, N.1
Mogues, T.2
Weremowicz, S.3
Morton, C.C.4
Sastry, K.N.5
-
31
-
-
0036314772
-
Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
-
Harrison, P.M. and Gerstein, M. 2002. Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution. J. Mol. Biol. 318: 1155-1174.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 1155-1174
-
-
Harrison, P.M.1
Gerstein, M.2
-
32
-
-
0035253528
-
Digging for dead genes: An analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome
-
Harrison, P.M., Echols, N., and Gerstein, M.B. 2001. Digging for dead genes: An analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome. Nucleic Acids Res. 29: 818-830.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 818-830
-
-
Harrison, P.M.1
Echols, N.2
Gerstein, M.B.3
-
33
-
-
0036300794
-
A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution
-
Harrison, P., Kumar, A., Lan, N., Echols, N., Snyder, M., and Gerstein, M. 2002a. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J. Mol. Biol. 316: 409-419.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 409-419
-
-
Harrison, P.1
Kumar, A.2
Lan, N.3
Echols, N.4
Snyder, M.5
Gerstein, M.6
-
34
-
-
0036180936
-
Molecular fossils in the human genome: Identification and analysis of processed and non-processed pseudogenes; in chromosomes 21 and 22
-
Harrison, P.M., Hegyi, H., Bertone, P., Echols, N., Johnson, T., Balasubramanian, S., Luscombe, N., and Gerstein, M. 2002b. Molecular fossils in the human genome: Identification and analysis of processed and non-processed pseudogenes; in chromosomes 21 and 22. Genome Res. 12: 272-280.
-
(2002)
Genome Res.
, vol.12
, pp. 272-280
-
-
Harrison, P.M.1
Hegyi, H.2
Bertone, P.3
Echols, N.4
Johnson, T.5
Balasubramanian, S.6
Luscombe, N.7
Gerstein, M.8
-
35
-
-
0036493224
-
A question of size: The eukaryotic proteome and the problems in defining it
-
Harrison, P.M., Kumar, A., Lang, N., Snyder, M., and Gerstein, M. 2002c. A question of size: The eukaryotic proteome and the problems in defining it. Nucleic Acids Res. 30: 1083-1090.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1083-1090
-
-
Harrison, P.M.1
Kumar, A.2
Lang, N.3
Snyder, M.4
Gerstein, M.5
-
36
-
-
0037327334
-
Identification of pseudogenes in the Drosophila melanogaster genome
-
Harrison, P.M., Milburn, D., Zhang, Z., Bertone, P., and Gerstein, M. 2003. Identification of pseudogenes in the Drosophila melanogaster genome. Nucleic Acids Res. 31: 1033-1037.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1033-1037
-
-
Harrison, P.M.1
Milburn, D.2
Zhang, Z.3
Bertone, P.4
Gerstein, M.5
-
37
-
-
0037055273
-
A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome
-
Homma, K., Fukuchi, S., Kawabata, T., Ota, M., and Nishikawa, K. 2002. A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Gene. 294: 25.
-
(2002)
Gene
, vol.294
, pp. 25
-
-
Homma, K.1
Fukuchi, S.2
Kawabata, T.3
Ota, M.4
Nishikawa, K.5
-
38
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T., Barker, D., Birney, E., Camero, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., et al. 2002. The Ensembl genome database project. Nucleic Acids Res. 30: 38-41.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Camero, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
39
-
-
0036720020
-
The Ka/Ks ratio: Diagnosing the form of sequence evolution
-
Hurst, L.D. 2002. The Ka/Ks ratio: Diagnosing the form of sequence evolution. Trends Genet. 18: 486.
-
(2002)
Trends Genet.
, vol.18
, pp. 486
-
-
Hurst, L.D.1
-
40
-
-
0037102094
-
mRNA-specific reverse transcription-polymerase chain reaction from human tissue extracts
-
Hurteau, G.J. and Spivack, S.D. 2002. mRNA-specific reverse transcription-polymerase chain reaction from human tissue extracts. Anal. Biochem. 307: 304-315.
-
(2002)
Anal. Biochem.
, vol.307
, pp. 304-315
-
-
Hurteau, G.J.1
Spivack, S.D.2
-
41
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
42
-
-
0031055331
-
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
-
Jurka, J. 1997. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc. Natl. Acad. Sci. 94: 1872-1877.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 1872-1877
-
-
Jurka, J.1
-
43
-
-
0028881190
-
Cell type-specific expression of hnRNP proteins
-
Kamma, H., Portman, D.S., and Dreyfuss, G. 1995. Cell type-specific expression of hnRNP proteins. Exp. Cell Res. 221: 187-196.
-
(1995)
Exp. Cell Res.
, vol.221
, pp. 187-196
-
-
Kamma, H.1
Portman, D.S.2
Dreyfuss, G.3
-
44
-
-
0031803462
-
A map of 75 human ribosomal protein genes
-
Kenmochi, N., Kawaguchi, T., Rozen, S., Davis, E., Goodman, N., Hudson, T.J., Tanaka, T., and Page, D.C. 1998. A map of 75 human ribosomal protein genes. Genome Res. 8: 509-523.
-
(1998)
Genome Res.
, vol.8
, pp. 509-523
-
-
Kenmochi, N.1
Kawaguchi, T.2
Rozen, S.3
Davis, E.4
Goodman, N.5
Hudson, T.J.6
Tanaka, T.7
Page, D.C.8
-
45
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
46
-
-
0028883684
-
Low specificity of cytokeratin 19 reverse transcriptase-polymerase chain reaction analyses for detection of hematogenous lung cancer dissemination
-
Krismann, M., Todt, B., Schroder, J., Gareis, D., Muller, K.M., Seeber, S., and Schutte, J. 1995. Low specificity of cytokeratin 19 reverse transcriptase-polymerase chain reaction analyses for detection of hematogenous lung cancer dissemination. J. Clin. Oncol. 13: 2769-2775.
-
(1995)
J. Clin. Oncol.
, vol.13
, pp. 2769-2775
-
-
Krismann, M.1
Todt, B.2
Schroder, J.3
Gareis, D.4
Muller, K.M.5
Seeber, S.6
Schutte, J.7
-
47
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li, W.H., Gu, Z., Wang, H., and Nekrutenko, A. 2001. Evolutionary analyses of the human genome. Nature 409: 847-849.
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
Gu, Z.2
Wang, H.3
Nekrutenko, A.4
-
48
-
-
0027905006
-
Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
-
Long, M. and Langley, C.H. 1993. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260: 91-95.
-
(1993)
Science
, vol.260
, pp. 91-95
-
-
Long, M.1
Langley, C.H.2
-
49
-
-
0242713700
-
The dominance of the population by a selected few: Power-law behaviour applies to a wide variety of genomic properties
-
RESEARCH0040
-
Luscombe, N.M., Qian, J., Zhang, Z., Johnson, T., and Gerstein, M. 2002. The dominance of the population by a selected few: Power-law behaviour applies to a wide variety of genomic properties. Genome Biol. 3: RESEARCH0040.
-
(2002)
Genome Biol.
, vol.3
-
-
Luscombe, N.M.1
Qian, J.2
Zhang, Z.3
Johnson, T.4
Gerstein, M.5
-
50
-
-
0017173987
-
An approach to the organization of eukaryotic genomes at a macromolecular level
-
Macaya, G., Thiery, J.P., and Bernardi, G. 1976. An approach to the organization of eukaryotic genomes at a macromolecular level. J. Mol. Biol. 108: 237-254.
-
(1976)
J. Mol. Biol.
, vol.108
, pp. 237-254
-
-
Macaya, G.1
Thiery, J.P.2
Bernardi, G.3
-
51
-
-
0029588403
-
mRNA retroposition in human cells: Processed pseudogene formation
-
Maestre, J., Tchenio, T., Dhellin, O., and Heidmann, T. 1995. mRNA retroposition in human cells: Processed pseudogene formation. EMBO J. 14: 6333-6338.
-
(1995)
EMBO J.
, vol.14
, pp. 6333-6338
-
-
Maestre, J.1
Tchenio, T.2
Dhellin, O.3
Heidmann, T.4
-
52
-
-
0033955368
-
Vertebrate pseudogenes
-
Mighell, A.J., Smith, N.R., Robinson, P.A., and Markham, A.F. 2000. Vertebrate pseudogenes. FEBS Lett. 468: 109-114.
-
(2000)
FEBS Lett.
, vol.468
, pp. 109-114
-
-
Mighell, A.J.1
Smith, N.R.2
Robinson, P.A.3
Markham, A.F.4
-
53
-
-
0025884418
-
The distribution of genes in the human genome
-
Mouchiroud, D., D'Onofrio, G., Aissani, B., Macaya, G., Gautier, C., and Bernardi, G. 1991. The distribution of genes in the human genome. Gene 100: 181-187.
-
(1991)
Gene
, vol.100
, pp. 181-187
-
-
Mouchiroud, D.1
D'Onofrio, G.2
Aissani, B.3
Macaya, G.4
Gautier, C.5
Bernardi, G.6
-
54
-
-
0036100124
-
Evidence suggesting that a fifth of annotated Caenorhabditis elegans genes may be pseudogenes
-
Mounsey, A., Bauer, P., and Hope, I.A. 2002. Evidence suggesting that a fifth of annotated Caenorhabditis elegans genes may be pseudogenes. Genome Res. 12: 770-775.
-
(2002)
Genome Res.
, vol.12
, pp. 770-775
-
-
Mounsey, A.1
Bauer, P.2
Hope, I.A.3
-
55
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M. and Gojobori, T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
57
-
-
0035860458
-
Mechanisms of evolution in Rickettsia conorii and R. prowazekii
-
Ogata, H., Audic, S., Renesto-Audiffren, P., Fournier, P.E., Barbe, V., Samson, D., Roux, V., Cossart, P., Weissenbach, J., Claverie, J.M., et al. 2001. Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science 293: 2093-2098.
-
(2001)
Science
, vol.293
, pp. 2093-2098
-
-
Ogata, H.1
Audic, S.2
Renesto-Audiffren, P.3
Fournier, P.E.4
Barbe, V.5
Samson, D.6
Roux, V.7
Cossart, P.8
Weissenbach, J.9
Claverie, J.M.10
-
58
-
-
0035807385
-
Genome sequence of Yersinia pestis, the causative agent of plague
-
Parkhill, J., Wren, B.W., Thomson, N.R., Titball, R.W., Holden, M.T., Prentice, M.B., Sebaihia, M., James, K.D., Churcher, C., Mungall, K.L., et al. 2001. Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413: 523-527.
-
(2001)
Nature
, vol.413
, pp. 523-527
-
-
Parkhill, J.1
Wren, B.W.2
Thomson, N.R.3
Titball, R.W.4
Holden, M.T.5
Prentice, M.B.6
Sebaihia, M.7
James, K.D.8
Churcher, C.9
Mungall, K.L.10
-
59
-
-
0035802397
-
Similar integration but different stability of Alus and LINEs in the human genome
-
Pavlicek, A., Jabbari, K., Paces, J., Paces, V., Hejnar, J., and Bernardi, G. 2001. Similar integration but different stability of Alus and LINEs in the human genome. Gene 276: 39-45.
-
(2001)
Gene
, vol.276
, pp. 39-45
-
-
Pavlicek, A.1
Jabbari, K.2
Paces, J.3
Paces, V.4
Hejnar, J.5
Bernardi, G.6
-
60
-
-
0031573415
-
Comparison of DNA sequences with protein sequences
-
Pearson, W.R. 1997. Comparison of DNA sequences with protein sequences. Genomics 46: 24-36.
-
(1997)
Genomics
, vol.46
, pp. 24-36
-
-
Pearson, W.R.1
-
61
-
-
0030079599
-
Mitochondrial DNA: Molecular fossils in the nucleus
-
Perna, N.T. and Kocher, T.D. 1996. Mitochondrial DNA: Molecular fossils in the nucleus. Curr. Biol. 6: 128-129.
-
(1996)
Curr. Biol.
, vol.6
, pp. 128-129
-
-
Perna, N.T.1
Kocher, T.D.2
-
62
-
-
0034064945
-
Pseudogene evolution and natural selection for a compact genome
-
Petrov, D.A. and Hartl, D.L. 2000. Pseudogene evolution and natural selection for a compact genome. J. Hered. 91: 221-227.
-
(2000)
J. Hered.
, vol.91
, pp. 221-227
-
-
Petrov, D.A.1
Hartl, D.L.2
-
63
-
-
0029856377
-
High intrinsic rate of DNA loss in Drosophila
-
Petrov, D.A., Lozovskaya, E.R., and Hard, D.L. 1996. High intrinsic rate of DNA loss in Drosophila. Nature 384: 346-349.
-
(1996)
Nature
, vol.384
, pp. 346-349
-
-
Petrov, D.A.1
Lozovskaya, E.R.2
Hard, D.L.3
-
64
-
-
0021770864
-
Post-transcriptional regulation of glyceraldehyde-3-phosphate-dehydrogenase gene expression in rat tissues
-
Piechaczyk, M., Blanchard, J.M., Marty, L., Dani, C., Panabieres, F., El Sabouty, S., Fort, P., and Jeanteur, P. 1984. Post-transcriptional regulation of glyceraldehyde-3-phosphate-dehydrogenase gene expression in rat tissues. Nucleic Acids Res. 12: 6951-6963.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 6951-6963
-
-
Piechaczyk, M.1
Blanchard, J.M.2
Marty, L.3
Dani, C.4
Panabieres, F.5
El Sabouty, S.6
Fort, P.7
Jeanteur, P.8
-
65
-
-
0034049664
-
The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses
-
Robertson, H.M. 2000. The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses. Genome Res. 10: 192-203.
-
(2000)
Genome Res.
, vol.10
, pp. 192-203
-
-
Robertson, H.M.1
-
66
-
-
0033524377
-
Identification of a novel cytokeratin 19 pseudogene that may interfere with reverse transcriptase-polymerase chain reaction assays used to detect micrometastatic tumor cells
-
Ruud, P., Fodstad, O., and Hovig, E. 1999. Identification of a novel cytokeratin 19 pseudogene that may interfere with reverse transcriptase-polymerase chain reaction assays used to detect micrometastatic tumor cells. Int. J. Cancer 80: 119-125.
-
(1999)
Int. J. Cancer
, vol.80
, pp. 119-125
-
-
Ruud, P.1
Fodstad, O.2
Hovig, E.3
-
67
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
Sachidanandam, R., Weissman, D., Schmidt, S.C., Kakol, J.M., Stein, L.D., Marth, G., Sherry, S., Mullikin, J.C., Mortimore, B.J., Willey, D.L., et al. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam, R.1
Weissman, D.2
Schmidt, S.C.3
Kakol, J.M.4
Stein, L.D.5
Marth, G.6
Sherry, S.7
Mullikin, J.C.8
Mortimore, B.J.9
Willey, D.L.10
-
68
-
-
9144233094
-
Cloning, expression and nuclear localization of human NPM3, a member of the nucleophosmin/nucleoplasmin family of nuclear chaperones
-
Shackleford, G.M., Ganguly, A., and MacArthur, C.A. 2001. Cloning, expression and nuclear localization of human NPM3, a member of the nucleophosmin/nucleoplasmin family of nuclear chaperones. BMC Genomics 2: 8.
-
(2001)
BMC Genomics
, vol.2
, pp. 8
-
-
Shackleford, G.M.1
Ganguly, A.2
MacArthur, C.A.3
-
69
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. 1981. Identification of common molecular subsequences. J. Mol. Biol. 147: 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
70
-
-
17144436629
-
Identification of a candidate tumour suppressor gene, MMAC1, at chromosome 10q23.3 that is mutated in multiple advanced cancers
-
Steck, P.A., Pershouse, M.A., Jasser, S.A., Yung, W.K., Lin, H., Ligon, A.H., Langford, L.A., Baumgard, M.L., Hattier, T., Davis, T., et al. 1997. Identification of a candidate tumour suppressor gene, MMAC1, at chromosome 10q23.3 that is mutated in multiple advanced cancers. Nat. Genet. 15: 356-362.
-
(1997)
Nat. Genet.
, vol.15
, pp. 356-362
-
-
Steck, P.A.1
Pershouse, M.A.2
Jasser, S.A.3
Yung, W.K.4
Lin, H.5
Ligon, A.H.6
Langford, L.A.7
Baumgard, M.L.8
Hattier, T.9
Davis, T.10
-
71
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
72
-
-
0036296922
-
Structure and chromosomal distribution of human mitochondrial pseudogenes
-
Tourmen, Y., Baris, O., Dessen, P., Jacques, C., Malthiery, Y., and Reynier, P. 2002. Structure and chromosomal distribution of human mitochondrial pseudogenes. Genomics 80: 71-77.
-
(2002)
Genomics
, vol.80
, pp. 71-77
-
-
Tourmen, Y.1
Baris, O.2
Dessen, P.3
Jacques, C.4
Malthiery, Y.5
Reynier, P.6
-
73
-
-
0035868428
-
A complete map of the human ribosomal protein genes: Assignment of 80 genes to the cytogenetic map and implications for human disorders
-
Uechi, T., Tanaka, T., and Kenmochi, N. 2001. A complete map of the human ribosomal protein genes: Assignment of 80 genes to the cytogenetic map and implications for human disorders. Genomics 72: 223-230.
-
(2001)
Genomics
, vol.72
, pp. 223-230
-
-
Uechi, T.1
Tanaka, T.2
Kenmochi, N.3
-
74
-
-
0022293979
-
Processed pseudogenes: Characteristics and evolution
-
Vanin, E.F. 1985. Processed pseudogenes: Characteristics and evolution. Annu. Rev. Genet. 19: 253-272.
-
(1985)
Annu. Rev. Genet.
, vol.19
, pp. 253-272
-
-
Vanin, E.F.1
-
75
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al. 2001. The sequence of the human genome. Science 291: 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
-
76
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston, R.H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J.F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
77
-
-
0031049922
-
Antisense transcription of a murine FGFR-3 pseudogene during fetal developement
-
Weil, D., Power, M.A., Webb, G.C., and Li, C.L. 1997. Antisense transcription of a murine FGFR-3 pseudogene during fetal developement. Gene 187: 115-122.
-
(1997)
Gene
, vol.187
, pp. 115-122
-
-
Weil, D.1
Power, M.A.2
Webb, G.C.3
Li, C.L.4
-
78
-
-
0033581875
-
Do all SINEs lead to LINEs?
-
Weiner, A.M. 1999. Do all SINEs lead to LINEs? Curr. Biol. 9: 842-844.
-
(1999)
Curr. Biol.
, vol.9
, pp. 842-844
-
-
Weiner, A.M.1
-
79
-
-
0033998548
-
Human glyceraldehyde 3-phosphate dehydrogenase-2 gene is expressed specifically in spermatogenic cells
-
Welch, J.E., Brown, P.L., O'Brien, D.A., Magyar, P.L., Bunch, D.O., Mori, C., and Eddy, E.M. 2000. Human glyceraldehyde 3-phosphate dehydrogenase-2 gene is expressed specifically in spermatogenic cells. J. Androl. 21: 328-338.
-
(2000)
J. Androl.
, vol.21
, pp. 328-338
-
-
Welch, J.E.1
Brown, P.L.2
O'Brien, D.A.3
Magyar, P.L.4
Bunch, D.O.5
Mori, C.6
Eddy, E.M.7
-
81
-
-
0029111830
-
Cyclophilin A, the major intracellular receptor for the immunosuppressant cyclosporin A, maps to chromosome 7p11.2-p13: Four pseudogenes map to chromosomes 3, 10, 14, and 18
-
Willenbrink, W., Halaschek, J., Schuffenhauer, S., Kunz, J., and Steinkasserer, A. 1995. Cyclophilin A, the major intracellular receptor for the immunosuppressant cyclosporin A, maps to chromosome 7p11.2-p13: Four pseudogenes map to chromosomes 3, 10, 14, and 18. Genomics 28: 101-104.
-
(1995)
Genomics
, vol.28
, pp. 101-104
-
-
Willenbrink, W.1
Halaschek, J.2
Schuffenhauer, S.3
Kunz, J.4
Steinkasserer, A.5
-
82
-
-
0031044512
-
Cyclophilin A is present in rat germ cells and is associated with spermatocyte apoptosis
-
Reproductive Toxicology Group
-
Wine, R.N., Ku, W.W., Li, L.H., and Chapin, R.E. 1997. Cyclophilin A is present in rat germ cells and is associated with spermatocyte apoptosis. Reproductive Toxicology Group. Biol. Reprod. 56: 439-446.
-
(1997)
Biol. Reprod.
, vol.56
, pp. 439-446
-
-
Wine, R.N.1
Ku, W.W.2
Li, L.H.3
Chapin, R.E.4
-
83
-
-
0036073133
-
Pattern of organization of human mitochondrial pseudogenes in the nuclear genome
-
Woischnik, M. and Moraes, C.T. 2002. Pattern of organization of human mitochondrial pseudogenes in the nuclear genome. Genome Res. 12: 885-893.
-
(2002)
Genome Res.
, vol.12
, pp. 885-893
-
-
Woischnik, M.1
Moraes, C.T.2
-
84
-
-
0028345354
-
Sensitivity of immunohistochemistry and polymerase chain reaction in detecting prostate cancer cells in bone marrow
-
Wood Jr., D.P., Banks, E.R., Humphreys, S., and Rangnekar, V.M. 1994. Sensitivity of immunohistochemistry and polymerase chain reaction in detecting prostate cancer cells in bone marrow. J. Histochem. Cytochem. 42: 505-511.
-
(1994)
J. Histochem. Cytochem.
, vol.42
, pp. 505-511
-
-
Wood Jr., D.P.1
Banks, E.R.2
Humphreys, S.3
Rangnekar, V.M.4
-
85
-
-
0029402642
-
Structure and evolution of mammalian ribosomal proteins
-
Wool, I.G., Chan, Y.L., and Gluck, A. 1995. Structure and evolution of mammalian ribosomal proteins. Biochem. Cell Biol. 73: 933-947.
-
(1995)
Biochem. Cell Biol.
, vol.73
, pp. 933-947
-
-
Wool, I.G.1
Chan, Y.L.2
Gluck, A.3
-
86
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton, J.C. and Federhen, S. 1993. Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem. 17: 149-163.
-
(1993)
Comput. Chem.
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
87
-
-
0000378875
-
Evidence for higher rates of nucleotide substitution in rodents than in man
-
Wu, C.I. and Li, W.H. 1985. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. 82: 1741-1745.
-
(1985)
Proc. Natl. Acad. Sci.
, vol.82
, pp. 1741-1745
-
-
Wu, C.I.1
Li, W.H.2
-
88
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: A program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
89
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang, Z. and Nielsen, R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17: 32-43.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
90
-
-
0035002015
-
Computational inference of homologous gene structures in the human genome
-
Yeh, R.F., Lim, L.P., and Burge, C. 2001. Computational inference of homologous gene structures in the human genome. Genome Res. 11: 803-816.
-
(2001)
Genome Res.
, vol.11
, pp. 803-816
-
-
Yeh, R.F.1
Lim, L.P.2
Burge, C.3
-
91
-
-
0036125672
-
The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes
-
Yoshihama, M., Uechi, T., Asakawa, S., Kawasaki, K., Kato, S., Higa, S., Maeda, N., Minoshima, S., Tanaka, T., Shimizu, N., et al. 2002. The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes. Genome Res. 12: 379-390.
-
(2002)
Genome Res.
, vol.12
, pp. 379-390
-
-
Yoshihama, M.1
Uechi, T.2
Asakawa, S.3
Kawasaki, K.4
Kato, S.5
Higa, S.6
Maeda, N.7
Minoshima, S.8
Tanaka, T.9
Shimizu, N.10
-
92
-
-
0141652962
-
The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
-
Zhang, Z. and Gerstein, M. 2003a. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene 61-72.
-
(2003)
Gene
, pp. 61-72
-
-
Zhang, Z.1
Gerstein, M.2
-
93
-
-
0037404108
-
Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome small star, filled
-
Zhang, Z. 2003b. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome small star, filled. Genomics 81: 468-480.
-
(2003)
Genomics
, vol.81
, pp. 468-480
-
-
Zhang, Z.1
-
94
-
-
0345306317
-
Patterns of nucleotide substitutions, insertions and deletions in the human genome as inferred from human pseudogenes
-
Zhang, Z. 2003c. Patterns of nucleotide substitutions, insertions and deletions in the human genome as inferred from human pseudogenes. Nucleic Acids Res. 31: 5338-5348.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5338-5348
-
-
Zhang, Z.1
-
95
-
-
0036796620
-
Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome
-
Zhang, Z., Harrison, P., and Gerstein, M. 2002. Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Res. 12: 1466-1482.
-
(2002)
Genome Res.
, vol.12
, pp. 1466-1482
-
-
Zhang, Z.1
Harrison, P.2
Gerstein, M.3
-
96
-
-
0026660296
-
Identification of antisense RNA transcripts from a human DNA topoisomerase I pseudogene
-
Zhou, B.S., Beidler, D.R., and Cheng, Y.C. 1992. Identification of antisense RNA transcripts from a human DNA topoisomerase I pseudogene. Cancer Res. 52: 4280-4285.
-
(1992)
Cancer Res.
, vol.52
, pp. 4280-4285
-
-
Zhou, B.S.1
Beidler, D.R.2
Cheng, Y.C.3
|