SIRE-1, a copia/Ty1 -like retroelement from soybean, encodes a retroviral envelope-like protein

Proceedings of the National Academy of Sciences of the United States of America

Volumn 95, Issue 12, 1998, Pages 6897-6902

  Laten, Howard M ^a   Majumdar, Arpita ^a   Gaucher, Eric A ^a  

^a LOYOLA UNIVERSITY CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS ENVELOPE PROTEIN;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; ENVELOPE GENE; GENOME; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN SECONDARY STRUCTURE; RETROPOSON; RETROVIRUS; SEQUENCE ANALYSIS; SOYBEAN; VIRUS ENVELOPE;

AMINO ACID SEQUENCE; ANIMALS; CATS; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; GENOME, PLANT; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; RETROVIRIDAE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SOYBEANS; VIRAL ENVELOPE PROTEINS;

DNA VIRUSES; EMBRYOPHYTA; FELIDAE; FELINE LEUKEMIA VIRUS; GLYCINE MAX; MAMMALIA; UNIDENTIFIED RETROVIRUS;

EID: 0032499714     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.95.12.6897     Document Type: Article

References (78)

1. Eickbush, T. H. (1994) in The Evolutionary Biology of Viruses, ed. Morse, S. S. (Raven, New York), pp. 121-157.
2. Varmus, H. & Brown, P. (1989) in Mobile DNA, eds. Berg, D. E. & Howe, M. M. (Am. Soc. Microbiol., Washington, DC), pp. 53-108.
3. Flavell, A. J. (1995) Comp. Biochem. Physiol. B 110, 3-15.
4. Urnovitz, H. B. & Murphy, W. H. (1996) Clin. Microbiol. Rev. 9, 72-99.
5. Flavell, A. J., Jackson, V., Iqbal, M. P., Riach, I. & Waddell, S. (1995) Mol. Gen. Genet. 246, 65-71.
6. Flavell, A. J. & Smith, D. B. (1992) Mol. Gen. Genet. 233, 322-326.
7. Tristem, M., Kabat, P., Herniou, E., Karpas, A. & Hill, F. (1995) Mol. Gen. Genet. 249, 229-236.
8. Greene, J. M., Otain, H., Good, P. J. & Dawid, I. B. (1993) Nucleic Acids Res. 21, 2375-2381.
9. Britten, R. J., McCormack, T. J., Mears, T. L. & Davidson, E. H. (1995) J. Mol. Evol. 40, 13-24.
10. Flavell, A. J., Smith, D. B. & Kumar, A. (1992) Mol. Gen. Genet. 231, 233-242.
11. Voytas, D. F., Cummings, M. P., Konieczny, A., Ausubel, F. M. & Rodermel, S. R. (1992) Proc. Natl. Acad. Sci. USA 89, 7124-7128.
12. Bennetzen, J. L. (1996) Trends Microbiol. 4, 347-353.
13. Britten, R. J. (1995) Proc. Natl. Acad. Sci. USA 92, 599-601.
14. Freed, E. O. & Martin, M. A. (1995) J. Biol. Chem. 270, 23883-23886.
15. Doolittle, R. F., Feng, D.-F., Johnson, M. S. & McClure, M. A. (1989) Q. Rev. Biol. 64, 1-30.
16. McClure, M. A. (1991) Mol. Biol. Evol. 8, 835-856.
17. White, SE, Habera, L. F. & Wessler, S. R. (1994) Proc. Natl. Acad. Sci. USA 91, 11792-11796.
18. SanMiguel, P., Tikhonov, A., Jin, Y.-K., Motchoulskaia, N., Zakharov, D., Melake-Berhan, A., Springer, P. S., Edwards, K. J., Lee, M., Avramova, Z., et al. (1996) Science 274, 765-768.
19. Saigo, K., Kugiyama, W., Matsuo, Y., Inouye, S., Yoshioka, K. & Yuki, S. (1984) Nature (London) 312, 659-661.
20. Inouye, S., Yuki, S. & Saigo, K. (1986) Eur. J. Biochem. 154, 417-425.
21. Marlor, R. L., Parkhurst, S. M. & Corces, V. G. (1986) Mol. Cell. Biol. 6, 1129-1134.
22. Tanda, S., Mullor, J. L. & Corces, V. G. (1994) Mol. Cell. Biol. 14, 5392-5401.
23. Friesen, P. D. & Nissen, M. S. (1990) Mol. Cell. Biol. 10, 3067-3077.
24. Felder, H., Herzceg, A., deChastonay, Y., Aeby, P., Tobler, H. & Muller, F. (1994) Gene 149, 219-225.
25. Song, S. U., Gerasimova, T., Kurkulos, M., Boeke, J. D. & Corces, V. G. (1994) Genes Dev. 8, 2046-2057.
26. Kim, A., Terzian, C., Santamaria, P., Pelisson, A., Prud'homme, N. & Bucheton, A. (1994) Proc. Natl. Acad. Sci. USA 91, 1285-1289.
27. Ozers, M. S. & Friesen, P. D. (1996) Virology 226, 252-259.
28. Laten, H. M. & Morris, R. O. (1993) Gene 133, 153-159.
29. Bi, Y.-A. & Laten, H. M. (1996) Plant Mol. Biol. 30, 1315-1319.
30. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, Plainview, NY).
31. Burmeister, M. & Lehrach, H. (1996) Trends Genet. 12, 389.
32. Devereux, J., Haeberli, P. & Smithies, O. (1984) Nucleic Acids Res. 12, 387-395.
33. Xiong, Y. & Eickbush, T. H. (1990) EMBO J. 9, 3353-3362.
34. Swofford, D. L. (1997) PAUP (Sinauer Associates, Sunderland, MA).
35. Geourjon, C. & Deleage, G. (1995) Comput. Appl. Biosci. 11, 681-684.
36. Gibrat, J. F., Garnier, J. & Robson, B. (1987) J. Mol. Biol. 198, 425-443.
37. Levin, J. M., Robson, B. & Garnier, J. (1986) FEBS Lett. 205, 303-308.
38. Solamov, A. A. & Solovyev, V. V. (1995) J. Mol. Biol. 247, 11-15.
39. Lupas, A., Dyke, M. & Van Stock, J. (1991) Science 252, 1162-1164.
40. Wolf, E., Kim, P. S. & Berger, B. (1997) Protein Sci. 6, 1179-1189.
41. Hofmann, K. & Stoffel, W. (1993) Biol. Chem. Hoppe-Seyler 374, 166.
42. Rost, B., Casadia, R., Fariselli, P. & Sander, C. (1995) Protein Sci. 4, 521-533.
43. Fourcade-Peronnet, F., d'Auriol, L., Becker, J., Galibert, F. & Best-Belpomme, M. (1988) Nucleic Acids Res. 16, 6113-6125.
44. Mount, S. M. & Rubin, G. M. (1985) Mol. Cell. Biol. 5, 1630-1638.
45. Grandbastien, M.-A., Spielmann, A. & Cabouche, M. (1989) Nature (London) 347, 376-380.
46. Hirochika, H., Otsuki, H., Yoshikawa, M., Otsuki, Y. & Sugimoto, K. (1996) Plant Cell 8, 725-734.
47. Bhattacharyya, M. K., Gonzales, R. A., Kraft, M. & Buzzell, R. I. (1997) Plant Mol. Biol. 34, 255-264.
48. Camirand, A., St-Pierre, B, Marineau, C. & Brisson, N, (1990) Mol. Gen. Genet. 224, 33-39.
49. Clare, J. & Farabaugh, P. (1985) Proc. Natl. Acad. Sci. USA 82, 2829-2833.
50. Hansen, L. J., Chalker, D. L. & Sandmeyer, S. B. (1988) Mol. Cell. Biol. 8, 5245-5256.
51. Smyth, D. R., Kalitsis, P., Joseph, J. L. & Sentry, J. W. (1989) Proc. Natl. Acad. Sci. USA 86, 5015-5019.
52. Olmsted, R. A., Hirsch, V. M., Purcell, R. H. & Johnson, P. R. (1989) Proc. Natl. Acad. Sci. USA 86, 8088-8092.
53. Ratner, L., Haseltine, W., Patearca, R., Livak, K. J., Starcich, B. R., et al. (1985) Nature (London) 313, 277-284.
54. Jin, Y.-K. & Bennetzen, J. L. (1989) Proc. Natl. Acad. Sci. USA 86, 6235-6239.
55. Bureau, T. E., White, SE & Wessler, S. R. (1994) Cell 77, 479-480.
56. Palmgren, M. G. (1994) Plant Mol. Biol. 25, 137-140.
57. Hunter, E. & Swanstrom, R. (1990) Curr. Top. Microbiol. Immunol. 157, 187-253.
58. Pinter, A. & Honnen, W. J. (1988) J. Virol. 62, 1016-1021.
59. Bernstein, H. B., Tucker, S. P., Kar, S. R., McPherson, S. A., McPherson, D. T., Dubay, J. W., Lebowitz, J., Compans, R. W. & Hunter, E. (1995) J. Virol. 69, 2745-2750.
60. Wilson, I. B. H., Gavel, Y. & von Heijne, G. (1991) Biochem. J. 275, 529-534.
61. Fontenot, J. D., Tjandra, N., Ho, C., Andrews, P. C. & Montelaro, R. C. (1994) J. Biomol. Struct. Dyn. 11, 821-836.
62. Williamson, M. P. (1994) Biochem. J. 297, 249-260.
63. Chan, D. C., Fass, D., Berger, J. M. & Kim, P. S. (1997) Cell 89, 263-273.
64. Fass, D., Harrison, S. C. & Kim, P. S. (1996) Nat. Struct. Biol. 3, 465-469.
65. Gallaher, W. R., Ball, J. M., Garry, R. F., Martin-Amedee, A. M. & Montelaro, R. C. (1995) AIDS Res. Hum. Retroviruses 11, 191-202.
66. Gallaher, W. R., Ball, J. M., Garry, R. F., Griffin, M. C. & Montelaro, R. C. (1989) AIDS Res. Hum. Retroviruses 5, 431-440.
67. Chambers, P., Pringle, C. R. & Easton, A. J. (1990) J. Gen. Virol. 71, 3075-3080.
68. Rabenstein, M. & Shin, Y.-K. (1995) Biochemistry 34, 13390-13397.
69. Hughson, F. M. (1995) Curr. Biol. 5, 265-274.
70. Shinnick, T. M., Lerner, R. A. & Sutcliffe, J. G. (1981) Nature (London) 293, 543-548.
71. Gething, M. J., Bye, J., Skehel, J. & Waterfield, M. (1980) Nature (London) 287, 301-306.
72. Matthews, R. E. F. (1991) Plant Virology (Academic, New York).
73. Mushegian, A. R. & Koonin, E. V. (1993) Arch. Virol. 133, 239-257.
74. Flavell, A. J., Dunbar, E., Anderson, R., Pearce, S. R., Hartley, R. & Kumar, A. (1992) Nucleic Acids Res. 14, 3639-3644.
75. VanderWiel, P. L., Voytas, D. F. & Wendel, J. F. (1993) J. Mol. Evol. 36, 429-447.
76. Pearce, S. R., Harrison, G., Li, D., Heslop-Harrison, J. S., Kumar, A. & Flavell, A. J. (1996) Mol. Gen. Genet. 250, 305-315.
77. Wang, S., Zhang, Q., Maughan, P. J. & Saghai Maroof, M. A. (1997) Plant Mol. Biol. 33, 1051-1058.
78. Holland, J. J., de la Torre, J. C. & Steinhauer, D. A. (1992) Curr. Top. Microbiol. Immunol. 176, 1-20.