메뉴 건너뛰기




Volumn 115, Issue 7, 2011, Pages 683-696

Expressed sequence tags reveal genetic diversity and putative virulence factors of the pathogenic oomycete Pythium insidiosum

Author keywords

EST; Expressed sequence tag; Oomycete; Pythiosis; Pythium insidiosum

Indexed keywords

VIRULENCE FACTOR;

EID: 79959860715     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2011.05.001     Document Type: Article
Times cited : (36)

References (78)
  • 2
    • 0034819639 scopus 로고    scopus 로고
    • Ferrochelatase is present in Brucella abortus and is critical for its intracellular survival and virulence
    • Almirón M., Martínez M., Sanjuan N., Ugalde R.A. Ferrochelatase is present in Brucella abortus and is critical for its intracellular survival and virulence. Infection and Immunity 2001, 69:6225-6230.
    • (2001) Infection and Immunity , vol.69 , pp. 6225-6230
    • Almirón, M.1    Martínez, M.2    Sanjuan, N.3    Ugalde, R.A.4
  • 5
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • Arnold K., Bordoli L., Kopp J., Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics (Oxford, England) 2006, 22:195-201.
    • (2006) Bioinformatics (Oxford, England) , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 6
    • 78650126298 scopus 로고    scopus 로고
    • Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome
    • Baxter L., Tripathy S., Ishaque N., Boot N., Cabral A. Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science (New York, N.Y.) 2010, 330:1549-1551.
    • (2010) Science (New York, N.Y.) , vol.330 , pp. 1549-1551
    • Baxter, L.1    Tripathy, S.2    Ishaque, N.3    Boot, N.4    Cabral, A.5
  • 11
    • 37349028000 scopus 로고    scopus 로고
    • Candida albicans GRX2, encoding a putative glutaredoxin, is required for virulence in a murine model
    • Chaves G.M., Bates S., Maccallum D.M., Odds F.C. Candida albicans GRX2, encoding a putative glutaredoxin, is required for virulence in a murine model. Genetics and Molecular Research: GMR 2007, 6:1051-1063.
    • (2007) Genetics and Molecular Research: GMR , vol.6 , pp. 1051-1063
    • Chaves, G.M.1    Bates, S.2    Maccallum, D.M.3    Odds, F.C.4
  • 17
    • 1442348239 scopus 로고    scopus 로고
    • A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe
    • Eisenhaber B., Schneider G., Wildpaner M., Eisenhaber F. A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. Journal of Molecular Biology 2004, 337:243-253.
    • (2004) Journal of Molecular Biology , vol.337 , pp. 243-253
    • Eisenhaber, B.1    Schneider, G.2    Wildpaner, M.3    Eisenhaber, F.4
  • 18
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 19
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (Version 3.2)
    • Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 20
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Molecular Biology and Evolution 1997, 14:685-695.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 23
    • 55549122238 scopus 로고    scopus 로고
    • Effector trafficking: RXLR-dEER as extra gear for delivery into plant cells
    • Govers F., Bouwmeester K. Effector trafficking: RXLR-dEER as extra gear for delivery into plant cells. The Plant Cell 2008, 20:1728-1730.
    • (2008) The Plant Cell , vol.20 , pp. 1728-1730
    • Govers, F.1    Bouwmeester, K.2
  • 24
    • 70349281388 scopus 로고    scopus 로고
    • Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
    • Haas B.J., Kamoun S., Zody M.C., Jiang R.H.Y., Handsaker R.E. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 2009, 461:393-398.
    • (2009) Nature , vol.461 , pp. 393-398
    • Haas, B.J.1    Kamoun, S.2    Zody, M.C.3    Jiang, R.H.Y.4    Handsaker, R.E.5
  • 26
    • 0032808171 scopus 로고    scopus 로고
    • Acquisition, transport, and storage of iron by pathogenic fungi
    • Howard D.H. Acquisition, transport, and storage of iron by pathogenic fungi. Clinical Microbiology Reviews 1999, 12:394-404.
    • (1999) Clinical Microbiology Reviews , vol.12 , pp. 394-404
    • Howard, D.H.1
  • 27
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • Huang X., Madan A. CAP3: a DNA sequence assembly program. Genome Research 1999, 9:868-877.
    • (1999) Genome Research , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 28
    • 67650721347 scopus 로고    scopus 로고
    • CateGOrizer: a web-based program to batch analyze gene ontology classification categories
    • Hu Z.-L., Bao J., Reecy J.M. CateGOrizer: a web-based program to batch analyze gene ontology classification categories. Online Journal of Bioinformatics 2008, 9:108-112.
    • (2008) Online Journal of Bioinformatics , vol.9 , pp. 108-112
    • Hu, Z.-L.1    Bao, J.2    Reecy, J.M.3
  • 29
    • 13844312649 scopus 로고    scopus 로고
    • ZINC - a free database of commercially available compounds for virtual screening
    • Irwin J.J., Shoichet B.K. ZINC - a free database of commercially available compounds for virtual screening. Journal of Chemical Information and Modeling 2005, 45:177-182.
    • (2005) Journal of Chemical Information and Modeling , vol.45 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 33
    • 0033394663 scopus 로고    scopus 로고
    • Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences
    • Kamoun S., Hraber P., Sobral B., Nuss D., Govers F. Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences. Fungal Genetics and Biology: FG & B 1999, 28:94-106.
    • (1999) Fungal Genetics and Biology: FG & B , vol.28 , pp. 94-106
    • Kamoun, S.1    Hraber, P.2    Sobral, B.3    Nuss, D.4    Govers, F.5
  • 35
    • 0037987953 scopus 로고    scopus 로고
    • Molecular genetics of pathogenic oomycetes
    • Kamoun S. Molecular genetics of pathogenic oomycetes. Eukaryotic Cell 2003, 2:191-199.
    • (2003) Eukaryotic Cell , vol.2 , pp. 191-199
    • Kamoun, S.1
  • 36
    • 33748334490 scopus 로고    scopus 로고
    • A catalogue of the effector secretome of plant pathogenic oomycetes
    • Kamoun S. A catalogue of the effector secretome of plant pathogenic oomycetes. Annual Review of Phytopathology 2006, 44:41-60.
    • (2006) Annual Review of Phytopathology , vol.44 , pp. 41-60
    • Kamoun, S.1
  • 42
    • 20444462002 scopus 로고    scopus 로고
    • Calcium- and calcineurin-independent roles for calmodulin in Cryptococcus neoformans morphogenesis and high-temperature growth
    • Kraus P.R., Nichols C.B., Heitman J. Calcium- and calcineurin-independent roles for calmodulin in Cryptococcus neoformans morphogenesis and high-temperature growth. Eukaryotic Cell 2005, 4:1079-1087.
    • (2005) Eukaryotic Cell , vol.4 , pp. 1079-1087
    • Kraus, P.R.1    Nichols, C.B.2    Heitman, J.3
  • 45
    • 37349026200 scopus 로고    scopus 로고
    • Exploration of the late stages of the tomato-Phytophthora parasitica interactions through histological analysis and generation of expressed sequence tags
    • Le Berre J.-Y., Engler G., Panabières F. Exploration of the late stages of the tomato-Phytophthora parasitica interactions through histological analysis and generation of expressed sequence tags. The New Phytologist 2008, 177:480-492.
    • (2008) The New Phytologist , vol.177 , pp. 480-492
    • Le Berre, J.-Y.1    Engler, G.2    Panabières, F.3
  • 47
    • 67649506535 scopus 로고    scopus 로고
    • Sterol metabolism in the oomycete Aphanomyces euteiches, a legume root pathogen
    • Madoui M.-A., Bertrand-Michel J., Gaulin E., Dumas B. Sterol metabolism in the oomycete Aphanomyces euteiches, a legume root pathogen. The New Phytologist 2009, 183:291-300.
    • (2009) The New Phytologist , vol.183 , pp. 291-300
    • Madoui, M.-A.1    Bertrand-Michel, J.2    Gaulin, E.3    Dumas, B.4
  • 48
    • 10344250457 scopus 로고    scopus 로고
    • Targeting malaria virulence and remodeling proteins to the host erythrocyte
    • Marti M., Good R.T., Rug M., Knuepfer E., Cowman A.F. Targeting malaria virulence and remodeling proteins to the host erythrocyte. Science (New York, N.Y.) 2004, 306:1930-1933.
    • (2004) Science (New York, N.Y.) , vol.306 , pp. 1930-1933
    • Marti, M.1    Good, R.T.2    Rug, M.3    Knuepfer, E.4    Cowman, A.F.5
  • 49
    • 0031542285 scopus 로고    scopus 로고
    • Cloning and characterization of a cDNA encoding an elicitor of Phytophthora parasitica var. nicotianae that shows cellulose-binding and lectin-like activities
    • Mateos F.V., Rickauer M., Esquerré-Tugayé M.T. Cloning and characterization of a cDNA encoding an elicitor of Phytophthora parasitica var. nicotianae that shows cellulose-binding and lectin-like activities. Molecular Plant-Microbe Interactions: MPMI 1997, 10:1045-1053.
    • (1997) Molecular Plant-Microbe Interactions: MPMI , vol.10 , pp. 1045-1053
    • Mateos, F.V.1    Rickauer, M.2    Esquerré-Tugayé, M.T.3
  • 50
    • 0027438319 scopus 로고
    • Life cycle of the human and animal oomycete pathogen Pythium insidiosum
    • Mendoza L., Hernandez F., Ajello L. Life cycle of the human and animal oomycete pathogen Pythium insidiosum. Journal of Clinical Microbiology 1993, 31:2967-2973.
    • (1993) Journal of Clinical Microbiology , vol.31 , pp. 2967-2973
    • Mendoza, L.1    Hernandez, F.2    Ajello, L.3
  • 53
  • 55
    • 0345268706 scopus 로고    scopus 로고
    • Characterization of Cu, Zn superoxide dismutase (SOD1) gene knock-out mutant of Cryptococcus neoformans var. gattii: role in biology and virulence
    • Narasipura S.D., Ault J.G., Behr M.J., Chaturvedi V., Chaturvedi S. Characterization of Cu, Zn superoxide dismutase (SOD1) gene knock-out mutant of Cryptococcus neoformans var. gattii: role in biology and virulence. Molecular Microbiology 2003, 47:1681-1694.
    • (2003) Molecular Microbiology , vol.47 , pp. 1681-1694
    • Narasipura, S.D.1    Ault, J.G.2    Behr, M.J.3    Chaturvedi, V.4    Chaturvedi, S.5
  • 56
  • 57
    • 1642463788 scopus 로고    scopus 로고
    • Innate immunity in plants and animals: striking similarities and obvious differences
    • Nürnberger T., Brunner F., Kemmerling B., Piater L. Innate immunity in plants and animals: striking similarities and obvious differences. Immunological Reviews 2004, 198:249-266.
    • (2004) Immunological Reviews , vol.198 , pp. 249-266
    • Nürnberger, T.1    Brunner, F.2    Kemmerling, B.3    Piater, L.4
  • 58
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: an application to display phylogenetic trees on personal computers
    • Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences: CABIOS 1996, 12:357-358.
    • (1996) Computer Applications in the Biosciences: CABIOS , vol.12 , pp. 357-358
    • Page, R.D.1
  • 59
    • 2642650312 scopus 로고    scopus 로고
    • Characterization of border species among Pythiaceae: several Pythium isolates produce elicitins, typical proteins from Phytophthora spp
    • Panabières F., Ponchet M., Allasia V., Cardin L., Ricci P. Characterization of border species among Pythiaceae: several Pythium isolates produce elicitins, typical proteins from Phytophthora spp. Mycological Research 1997, 101:1459-1468.
    • (1997) Mycological Research , vol.101 , pp. 1459-1468
    • Panabières, F.1    Ponchet, M.2    Allasia, V.3    Cardin, L.4    Ricci, P.5
  • 62
    • 0034071817 scopus 로고    scopus 로고
    • Comparative analysis of expressed sequences in Phytophthora sojae
    • Qutob D., Hraber P.T., Sobral B.W., Gijzen M. Comparative analysis of expressed sequences in Phytophthora sojae. Plant Physiology 2000, 123:243-254.
    • (2000) Plant Physiology , vol.123 , pp. 243-254
    • Qutob, D.1    Hraber, P.T.2    Sobral, B.W.3    Gijzen, M.4
  • 65
    • 33745585336 scopus 로고    scopus 로고
    • The role of KAHRP domains in knob formation and cytoadherence of P. falciparum-infected human erythrocytes
    • Rug M., Prescott S.W., Fernandez K.M., Cooke B.M., Cowman A.F. The role of KAHRP domains in knob formation and cytoadherence of P. falciparum-infected human erythrocytes. Blood 2006, 108:370-378.
    • (2006) Blood , vol.108 , pp. 370-378
    • Rug, M.1    Prescott, S.W.2    Fernandez, K.M.3    Cooke, B.M.4    Cowman, A.F.5
  • 66
    • 0013886782 scopus 로고
    • Sterols and the sensitivity of Pythium species to filipin
    • Schlosser E., Gottlieb D. Sterols and the sensitivity of Pythium species to filipin. Journal of Bacteriology 1966, 91:1080-1084.
    • (1966) Journal of Bacteriology , vol.91 , pp. 1080-1084
    • Schlosser, E.1    Gottlieb, D.2
  • 67
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: an automated protein homology-modeling server
    • Schwede T., Kopp J., Guex N., Peitsch M.C. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Research 2003, 31:3381-3385.
    • (2003) Nucleic Acids Research , vol.31 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 68
    • 0842274381 scopus 로고    scopus 로고
    • The Avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene Rps1b
    • Shan W., Cao M., Leung D., Tyler B.M. The Avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene Rps1b. Molecular Plant-Microbe Interactions: MPMI 2004, 17:394-403.
    • (2004) Molecular Plant-Microbe Interactions: MPMI , vol.17 , pp. 394-403
    • Shan, W.1    Cao, M.2    Leung, D.3    Tyler, B.M.4
  • 70
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 71
    • 24044500593 scopus 로고    scopus 로고
    • Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors
    • Torto-Alalibo T., Tian M., Gajendran K., Waugh M.E., van West P., Kamoun S. Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors. BMC Microbiology 2005, 5:46.
    • (2005) BMC Microbiology , vol.5 , pp. 46
    • Torto-Alalibo, T.1    Tian, M.2    Gajendran, K.3    Waugh, M.E.4    van West, P.5    Kamoun, S.6
  • 72
    • 58149293042 scopus 로고    scopus 로고
    • Entering and breaking: virulence effector proteins of oomycete plant pathogens
    • Tyler B.M. Entering and breaking: virulence effector proteins of oomycete plant pathogens. Cellular Microbiology 2009, 11:13-20.
    • (2009) Cellular Microbiology , vol.11 , pp. 13-20
    • Tyler, B.M.1
  • 73
    • 33748329373 scopus 로고    scopus 로고
    • Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
    • Tyler B.M., Tripathy S., Zhang X., Dehal P., Jiang R.H.Y. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science (New York, N.Y.) 2006, 313:1261-1266.
    • (2006) Science (New York, N.Y.) , vol.313 , pp. 1261-1266
    • Tyler, B.M.1    Tripathy, S.2    Zhang, X.3    Dehal, P.4    Jiang, R.H.Y.5
  • 75
    • 42549146892 scopus 로고    scopus 로고
    • Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes
    • Win J., Kamoun S. Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Signaling & Behavior 2008, 3:251-253.
    • (2008) Plant Signaling & Behavior , vol.3 , pp. 251-253
    • Win, J.1    Kamoun, S.2
  • 76
    • 29844450483 scopus 로고    scopus 로고
    • Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans
    • Win J., Kanneganti T.-D., Torto-Alalibo T., Kamoun S. Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans. Fungal Genetics and Biology: FG & B 2006, 43:20-33.
    • (2006) Fungal Genetics and Biology: FG & B , vol.43 , pp. 20-33
    • Win, J.1    Kanneganti, T.-D.2    Torto-Alalibo, T.3    Kamoun, S.4
  • 78
    • 33747868144 scopus 로고    scopus 로고
    • KOBAS server: a web-based platform for automated annotation and pathway identification
    • Wu J., Mao X., Cai T., Luo J., Wei L. KOBAS server: a web-based platform for automated annotation and pathway identification. Nucleic Acids Research 2006, 34:W720-W724.
    • (2006) Nucleic Acids Research , vol.34
    • Wu, J.1    Mao, X.2    Cai, T.3    Luo, J.4    Wei, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.