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Volumn 7, Issue , 2006, Pages

TreeDyn: Towards dynamic graphics and annotations for analyses of trees

Author keywords

[No Author keywords available]

Indexed keywords

EXTERNAL INFORMATIONS; GRAPHICAL ANALYSIS; GRAPHICAL ELEMENTS; GRAPHICAL METHODS; MULTIPLE WINDOWS; STRUCTURE/FUNCTION; TREE REPRESENTATION; TREE VISUALIZATION;

EID: 33750314083     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-439     Document Type: Article
Times cited : (880)

References (39)
  • 1
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page RD: TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996, 12:357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 2
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • Perrière G, Gouy M: WWW-Query: An on-line retrieval system for biological sequence banks. Biochimie 1996, 78:364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 3
    • 0033753685 scopus 로고    scopus 로고
    • Visualizing large hierarchical clusters in hyperbolic space
    • Bingham J, Sudarsanam S: Visualizing large hierarchical clusters in hyperbolic space. Bioinformatics 2000, 16:660-661.
    • (2000) Bioinformatics , vol.16 , pp. 660-661
    • Bingham, J.1    Sudarsanam, S.2
  • 4
    • 0036171334 scopus 로고    scopus 로고
    • TreeWiz: Interactive exploration of huge trees
    • Rost U, Bornberg-Bauer E: TreeWiz: interactive exploration of huge trees. Bioinformatics 2002, 18:109-114.
    • (2002) Bioinformatics , vol.18 , pp. 109-114
    • Rost, U.1    Bornberg-Bauer, E.2
  • 5
    • 2942607519 scopus 로고    scopus 로고
    • Visualising very large phylogenetic trees in three dimensional hyperbolic space
    • Hughes T, Hyun Y, Liberles DA: Visualising very large phylogenetic trees in three dimensional hyperbolic space. BMC Bioinformatics 2004, 5:48.
    • (2004) BMC Bioinformatics , vol.5 , pp. 48
    • Hughes, T.1    Hyun, Y.2    Liberles, D.A.3
  • 7
    • 22844442543 scopus 로고    scopus 로고
    • Analysis and Visualization of Tree Space
    • K SJ
    • Hillis DM, TA H, K SJ: Analysis and Visualization of Tree Space. Syst Biol 2005, 54:471-482.
    • (2005) Syst Biol , vol.54 , pp. 471-482
    • Hillis, D.M.1    Ta, H.2
  • 9
    • 0035025126 scopus 로고    scopus 로고
    • ATV: Display and manipulation of annotated phylogenetic trees
    • Zmasek CM, Eddy SR: ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics 2001, 17:383-384.
    • (2001) Bioinformatics , vol.17 , pp. 383-384
    • Zmasek, C.M.1    Eddy, S.R.2
  • 11
    • 7944238738 scopus 로고    scopus 로고
    • Information visualization techniques in bioinformatics during the postgenomic era
    • Tao Y, Liu Y, Friedman C, Lussier YA: Information visualization techniques in bioinformatics during the postgenomic era. Drug Discovery Today: BIOSILICO 2004:237-245.
    • (2004) Drug Discovery Today: Biosilico , pp. 237-245
    • Tao, Y.1    Liu, Y.2    Friedman, C.3    Lussier, Y.A.4
  • 15
    • 0003885069 scopus 로고
    • Tcl and the Tk Toolkit
    • Addison-Wesley
    • Ousterhout JK: Tcl and the Tk Toolkit. Addison-Wesley; 1994.
    • (1994)
    • Ousterhout, J.K.1
  • 17
    • 0003574681 scopus 로고    scopus 로고
    • Dynamic Graphics for Statistics
    • Wadsworth & Brooks/Cole
    • Cleveland WS, McGill ME: Dynamic Graphics for Statistics. Wadsworth & Brooks/Cole; 1998.
    • (1998)
    • Cleveland, W.S.1    McGill, M.E.2
  • 19
    • 1442329655 scopus 로고    scopus 로고
    • Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network
    • Brun C, Chevenet F, Martin D, Wojcik J, Guénoche A, Jacq B: Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome Biology 2003, 5:R6.
    • (2003) Genome Biology , vol.5
    • Brun, C.1    Chevenet, F.2    Martin, D.3    Wojcik, J.4    Guénoche, A.5    Jacq, B.6
  • 20
    • 33644864549 scopus 로고    scopus 로고
    • Genome-Wide Prediction of C. elegans Genetic Interactions
    • Zhong W, Sternberg PW: Genome-Wide Prediction of C. elegans Genetic Interactions. Science 2006, 311:1481-1484.
    • (2006) Science , vol.311 , pp. 1481-1484
    • Zhong, W.1    Sternberg, P.W.2
  • 21
    • 32144442519 scopus 로고    scopus 로고
    • PRODISTIN web site: A tool for the functional classification of proteins from interaction networks
    • Baudot A, Martin D, Mouren P, Chevenet F, Guenoche A, Jacq B, Brun C: PRODISTIN web site: a tool for the functional classification of proteins from interaction networks. Bioinformatics 2006, 22:248-250.
    • (2006) Bioinformatics , vol.22 , pp. 248-250
    • Baudot, A.1    Martin, D.2    Mouren, P.3    Chevenet, F.4    Guenoche, A.5    Jacq, B.6    Brun, C.7
  • 23
    • 0001354740 scopus 로고
    • TreeBASE: A prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life
    • Sanderson MJ, Donoghue, Piel W, Eriksson T: TreeBASE: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. Amer Jour Bot 1994, 81:163.
    • (1994) Amer Jour Bot , vol.81 , pp. 163
    • Sanderson, M.J.1    Donoghue2    Piel, W.3    Eriksson, T.4
  • 24
    • 0000299257 scopus 로고
    • Progress and prospects in reconstructing plant phylogeny
    • Donoghue MJ: Progress and prospects in reconstructing plant phylogeny. Ann Missouri Bot Gard 1994, 81:405-418.
    • (1994) Ann Missouri Bot Gard , vol.81 , pp. 405-418
    • Donoghue, M.J.1
  • 25
    • 0029785398 scopus 로고    scopus 로고
    • TreeBASE: The roots of phylogeny
    • Morell V: TreeBASE: the roots of phylogeny. Science 1996, 273:569-569.
    • (1996) Science , vol.273 , pp. 569
    • Morell, V.1
  • 27
    • 84948737304 scopus 로고    scopus 로고
    • SpaceTree: Supporting exploration in large node link tree, design evolution and empirical evaluation. Information Visualization
    • Plaisant C, Grosjean J, Bederson BB: SpaceTree: supporting exploration in large node link tree, design evolution and empirical evaluation. Information Visualization. INFOVIS IEEE Symposium 2002:57-64.
    • (2002) INFOVIS IEEE Symposium , pp. 57-64
    • Plaisant, C.1    Grosjean, J.2    Bederson, B.B.3
  • 28
    • 0034518111 scopus 로고    scopus 로고
    • Arbor 3D: An interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions
    • Ruths DA, Chen ES, Ellis L: Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions. Bioinformatics 2000, 16:1003-1009.
    • (2000) Bioinformatics , vol.16 , pp. 1003-1009
    • Ruths, D.A.1    Chen, E.S.2    Ellis, L.3
  • 30
    • 0042665169 scopus 로고    scopus 로고
    • Interactive Visualization of Large Graphs and Networks
    • Stanford University
    • Munzner T: Interactive Visualization of Large Graphs and Networks. Stanford University: 2000.
    • (2000)
    • Munzner, T.1
  • 31
    • 9644287776 scopus 로고    scopus 로고
    • TreeGraph: Automated drawing of complex tree figures using an extensible tree description format
    • Müller J, K M: TreeGraph: automated drawing of complex tree figures using an extensible tree description format. Molecular Ecology Notes 2004, 4:786-788.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 786-788
    • Müller, J.K.M.1
  • 32
    • 0034894278 scopus 로고    scopus 로고
    • PAL: An object-oriented programming library for molecular evolution and phylogenetics
    • Drummond A, Strimmer K: PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinformatics 2001, 17:662-663.
    • (2001) Bioinformatics , vol.17 , pp. 662-663
    • Drummond, A.1    Strimmer, K.2
  • 33
    • 0003002776 scopus 로고
    • Optimal algorithms for comparing trees with labeled leaves
    • Day W: Optimal algorithms for comparing trees with labeled leaves. Journal of Classification 1985, 2:7-28.
    • (1985) Journal of Classification , vol.2 , pp. 7-28
    • Day, W.1
  • 35
    • 84886755870 scopus 로고    scopus 로고
    • Visualizing Restricted Landscapes of Phylogenetic Trees
    • Montealegre I, St John K: Visualizing Restricted Landscapes of Phylogenetic Trees. 2002 [http://comet.lehman.cuny.edu/treeviz/papers/ Evolu_Montealegre_20030601_061139.pdf].
    • (2002)
    • Montealegre, I.1    St John, K.2
  • 36
    • 33646187742 scopus 로고
    • The Newick tree format
    • Felsenstein J: The Newick tree format. 1986 [http://evolution.genetics.washington.edu/phylip/newicktree.html].
    • (1986)
    • Felsenstein, J.1
  • 37
    • 0031350056 scopus 로고    scopus 로고
    • NEXUS: An extensible file format for systematic information
    • Maddison DR, Swofford DL, Maddison WP: NEXUS: an extensible file format for systematic information. Syst Biol 1997, 46:590-621.
    • (1997) Syst Biol , vol.46 , pp. 590-621
    • Maddison, D.R.1    Swofford, D.L.2    Maddison, W.P.3
  • 38
    • 17644400701 scopus 로고    scopus 로고
    • Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome
    • Simon O, Chevenet F, Williams T, Caballero P, Lopez-Ferber M: Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome. Virus Genes 2005, 30:403-417.
    • (2005) Virus Genes , vol.30 , pp. 403-417
    • Simon, O.1    Chevenet, F.2    Williams, T.3    Caballero, P.4    Lopez-Ferber, M.5
  • 39
    • 84874664075 scopus 로고    scopus 로고
    • TreeDyn
    • TreeDyn [http://www.treedyn.org.]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.