-
1
-
-
0025851273
-
Structural aspects of protein-DNA recognition
-
Freemont, P.S., Lane, A.N. and Sanderson, M.R. (1991) Structural aspects of protein-DNA recognition. Biochem. J., 278, 1-23.
-
(1991)
Biochem. J.
, vol.278
, pp. 1-23
-
-
Freemont, P.S.1
Lane, A.N.2
Sanderson, M.R.3
-
2
-
-
33746748243
-
An overview of the structures of protein-DNA complexes
-
Luscombe, N.M., Austin, S.E., Berman, H.M. and Thornton, J.M. (2000) An overview of the structures of protein-DNA complexes. Genome Biol.
-
(2000)
Genome Biol
-
-
Luscombe, N.M.1
Austin, S.E.2
Berman, H.M.3
Thornton, J.M.4
-
4
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
Boehr, D.D., Nussinov, R. and Wright, P.E. (2009) The role of dynamic conformational ensembles in biomolecular recognition. Nat. Chem. Biol., 5, 789-796.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
5
-
-
5444244823
-
The role of weak specific and nonspecific interactions in enzymatic recognition and conversion of long DNAs
-
DOI 10.1023/B:MBIL.0000043935.99590.ba
-
Nevinsky, G.A. (2004) The role of weak specific and nonspecific interactions in enzymatic recognition and conversion of long DNAs. Mol. Biol., 38, 636-662. (Pubitemid 39360777)
-
(2004)
Molecular Biology
, vol.38
, Issue.5
, pp. 636-662
-
-
Nevinsky, G.A.1
-
6
-
-
20444470105
-
Formation of nucleoprotein RecA filament on single-stranded DNA: Analysis by stepwise increase in ligand complexity
-
DOI 10.1111/j.1742-4658.2005.04693.x
-
Bugreeva, I.P., Bugreev, D.V. and Nevinsky, G.A. (2005) Formation of nucleoprotein RecA filament on single-stranded DNA: analysis by stepwise increase in ligand complexity. FEBS J., 272, 2734-2745. (Pubitemid 40825421)
-
(2005)
FEBS Journal
, vol.272
, Issue.11
, pp. 2734-2745
-
-
Bugreeva, I.P.1
Bugreev, D.V.2
Nevinsky, G.A.3
-
7
-
-
0025162225
-
Structure-function analysis of mononucleotides and short oligonucleotides in the priming of enzymatic DNA synthesis
-
Nevinsky, G.A., Veniaminova, A.G., Levina, A.S., Podust, V.N., Lavrik, O.I. and Holler, E. (1990) Structure-function analysis of mononucleotides and short oligonucleotides in the priming of enzymatic DNA synthesis. Biochemistry, 29, 1200-1207. (Pubitemid 20053843)
-
(1990)
Biochemistry
, vol.29
, Issue.5
, pp. 1200-1207
-
-
Nevinsky, G.A.1
Veniaminova, A.G.2
Levina, A.S.3
Podust, V.N.4
Lavrik, O.I.5
Holler, E.6
-
8
-
-
0025835232
-
The mechanism of recognition of templates by DNA polymerases from pro- and eukaryotes as revealed by affinity modification data
-
Kolocheva, T.I., Nevinsky, G.A., Levina, A.S., Khomov, V.V. and Lavrik, O.I. (1991) The mechanism of recognition of templates by DNA polymerases from pro- and eukaryotes as revealed by affinity modification data. J. Biomol. Struct. Dyn., 9, 169-186.
-
(1991)
J. Biomol. Struct. Dyn.
, vol.9
, pp. 169-186
-
-
Kolocheva, T.I.1
Nevinsky, G.A.2
Levina, A.S.3
Khomov, V.V.4
Lavrik, O.I.5
-
9
-
-
0032378903
-
Uracil DNA glycosylase: Interpretation of X-ray data in the light of kinetic and thermodynamic studies [in Russian]
-
Vinogradova, N.L., Bulychev, N.V., Maksakova, G.A., Johnson, F. and Nevinskii, G.A. (1998) Uracil DNA glycosylase: Interpretation of X-ray data in the light of kinetic and thermodynamic studies [in Russian]. Mol. Biol., 32, 400-409.
-
(1998)
Mol. Biol.
, vol.32
, pp. 400-409
-
-
Vinogradova, N.L.1
Bulychev, N.V.2
Maksakova, G.A.3
Johnson, F.4
Nevinskii, G.A.5
-
10
-
-
75749127253
-
Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition
-
Zharkov, D.O., Mechetin, G.V. and Nevinsky, G.A. (2010) Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition. Mutat. Res., 685, 11-20.
-
(2010)
Mutat. Res.
, vol.685
, pp. 11-20
-
-
Zharkov, D.O.1
Mechetin, G.V.2
Nevinsky, G.A.3
-
11
-
-
0037129958
-
Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli
-
DOI 10.1021/bi0121297
-
Ishchenko, A.A., Vasilenko, N.L., Sinitsina, O.I., Yamkovoy, V.I., Fedorova, O.S., Douglas, K.T. and Nevinsky, G.A. (2002) Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli. Biochemistry, 41, 7540-7548. (Pubitemid 34627780)
-
(2002)
Biochemistry
, vol.41
, Issue.24
, pp. 7540-7548
-
-
Ishchenko, A.A.1
Vasilenko, N.L.2
Sinitsina, O.I.3
Yamkovoy, V.I.4
Fedorova, O.S.5
Douglas, K.T.6
Nevinsky, G.A.7
-
12
-
-
0345448159
-
Recognition of damaged DNA by Escherichia coli Fpg protein: Insights from structural and kinetic data
-
DOI 10.1016/j.mrfmmm.2003.09.002
-
Zharkov, D.O., Ishchenko, A.A., Douglas, K.T. and Nevinsky, G.A. (2003) Recognition of damaged DNA by Escherichia coli Fpg protein: insights from structural and kinetic data. Mutat. Res., 531, 141-156. (Pubitemid 37456728)
-
(2003)
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis
, vol.531
, Issue.1-2
, pp. 141-156
-
-
Zharkov, D.O.1
Ishchenko, A.A.2
Douglas, K.T.3
Nevinsky, G.A.4
-
13
-
-
4944240061
-
Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endocuclease from human placenta
-
DOI 10.1093/nar/gkh846
-
Beloglazova, N.G., Kirpota, O.O., Starostin, K.V., Ishchenko, A.A., Yamkovoy, V.I., Zharkov, D.O., Douglas, K.T. and Nevinsky, G.A. (2004) Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/ apyrimidinic endonuclease from human placenta. Nucleic Acids Res., 32, 5134-5146. (Pubitemid 39445501)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.17
, pp. 5134-5146
-
-
Beloglazova, N.G.1
Kirpota, O.O.2
Starostin, K.V.3
Ishchenko, A.A.4
Yamkovoy, V.I.5
Zharkov, D.O.6
Douglas, K.T.7
Nevinsky, G.A.8
-
14
-
-
0034871331
-
Interaction of endonuclease EcoRI with short specific and nonspecific oligonucleotides
-
DOI 10.1080/152165401753544269
-
Kolocheva, T.I., Maksakova, G.A., Bugreev, D.V. and Nevinsky, G.A. (2001) Interaction of endonuclease EcoRI with short specific and nonspecific oligonucleotides. IUBMB Life, 51, 189-195. (Pubitemid 32802480)
-
(2001)
IUBMB Life
, vol.51
, Issue.3
, pp. 189-195
-
-
Kolocheva, T.I.1
Maksakova, G.A.2
Bugreev, D.D.3
Nevinsky, G.A.4
-
15
-
-
0037265920
-
The mechanism of the supercoiled DNA recognition by the eukaryotic type i topoisomerases. I. the enzyme interaction with nonspecific oligonucleotides
-
Bugreev, D.V., Buneva, V.N., Sinitsyna, O.I. and Nevinsky, G.A. (2003) The mechanism of the supercoiled DNA recognition by the eukaryotic type I topoisomerases. I. The enzyme interaction with nonspecific oligonucleotides. Russ. J. Bioorg. Chem., 29, 143-153.
-
(2003)
Russ. J. Bioorg. Chem.
, vol.29
, pp. 143-153
-
-
Bugreev, D.V.1
Buneva, V.N.2
Sinitsyna, O.I.3
-
16
-
-
0038542074
-
The mechanism of supercoiled DNA recognition by eukaryotic type i topoisomerases. II. A comparison of the enzyme interaction with specific and nonspecific oligonucleotides
-
Bugreev, D.V., Sinitsyna, O.I., Buneva, V.N. and Nevinsky, G.A. (2003) The mechanism of supercoiled DNA recognition by eukaryotic type I topoisomerases. II. A comparison of the enzyme interaction with specific and nonspecific oligonucleotides. Russ. J. Bioorg. Chem., 29, 249-261.
-
(2003)
Russ. J. Bioorg. Chem.
, vol.29
, pp. 249-261
-
-
Bugreev, D.V.1
Sinitsyna, O.I.2
Buneva, V.N.3
Nevinsky, G.A.4
-
17
-
-
0043166967
-
Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase
-
DOI 10.1021/bi0300480
-
Bugreev, D.V., Baranova, S., Zakharova, O.D., Parissi, V., Desjobert, C., Sottofattori, E., Balbi, A., Litvak, S., Tarrago- Litvak, L. and Nevinsky, G.A. (2003) Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase. Biochemistry, 42, 9235-9247. (Pubitemid 36935434)
-
(2003)
Biochemistry
, vol.42
, Issue.30
, pp. 9235-9247
-
-
Bugreev, D.V.1
Baranova, S.2
Zakharova, O.D.3
Parissi, V.4
Desjobert, C.5
Sottofattori, E.6
Balbi, A.7
Litvak, S.8
Tarrago-Litvak, L.9
Nevinsky, G.A.10
-
18
-
-
0031916984
-
The free radical theory of aging matures
-
Beckman, K.B. and Ames, B.N. (1998) The free radical theory of aging matures. Physiol. Rev., 78, 547-581. (Pubitemid 28182903)
-
(1998)
Physiological Reviews
, vol.78
, Issue.2
, pp. 547-581
-
-
Beckman, K.B.1
Ames, B.N.2
-
19
-
-
0034666313
-
Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase
-
Zharkov, D.O., Rosenquist, T.A., Gerchman, S.E. and Grollman, A.P. (2000) Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase. J. Biol. Chem., 275, 28607-28617.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28607-28617
-
-
Zharkov, D.O.1
Rosenquist, T.A.2
Gerchman, S.E.3
Grollman, A.P.4
-
20
-
-
0033569954
-
Excision of oxidatively damaged DNA bases by the human α-hOgg1 protein and the polymorphic α-hOgg1(Ser326Cys) protein which is frequently found in human populations
-
DOI 10.1093/nar/27.20.4001
-
Dherin, C., Radicella, J.P., Dizdaroglu, M. and Boiteux, S. (1999) Excision of oxidatively damaged DNA bases by the human a-hOgg1 protein and the polymorphic a-hOgg1(Ser326Cys) protein which is frequently found in human populations. Nucleic Acids Res., 27, 4001-4007. (Pubitemid 29479026)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.20
, pp. 4001-4007
-
-
Dherin, C.1
Radicella, J.P.2
Dizdaroglu, M.3
Boiteux, S.4
-
21
-
-
22444442634
-
Kinetics of substrate recognition and cleavage by human 8-oxoguanine-DNA glycosylase
-
DOI 10.1093/nar/gki694
-
Kuznetsov, N.A., Koval, V.V., Zharkov, D.O., Nevinsky, G.A., Douglas, K.T. and Fedorova, O.S. (2005) Kinetics of substrate recognition and cleavage by human 8-oxoguanine-DNA glycosylase. Nucleic Acids Res., 33, 3919-3931. (Pubitemid 41418560)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.12
, pp. 3919-3931
-
-
Kuznetsov, N.A.1
Koval, V.V.2
Zharkov, D.O.3
Nevinsky, G.A.4
Douglas, K.T.5
Fedorova, O.S.6
-
22
-
-
33847718732
-
Kinetic conformational analysis of human 8-oxoguanine-DNA glycosylase
-
DOI 10.1074/jbc.M605788200
-
Kuznetsov, N.A., Koval, V.V., Nevinsky, G.A., Douglas, K.T., Zharkov, D.O. and Fedorova, O.S. (2007) Kinetic conformational analysis of human 8-oxoguanine-DNA glycosylase. J. Biol. Chem., 282, 1029-1038. (Pubitemid 47076516)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.2
, pp. 1029-1038
-
-
Kuznetsov, N.A.1
Koval, V.V.2
Nevinsky, G.A.3
Douglas, K.T.4
Zharkov, D.O.5
Fedorova, O.S.6
-
23
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
DOI 10.1016/S0960-9822(02)00641-3
-
Nash, H.M., Bruner, S.D., Schärer, O.D., Kawate, T., Addona, T.A., Spooner, E., Lane, W.S. and Verdine, G.L. (1996) Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr. Biol., 6, 968-980. (Pubitemid 26350717)
-
(1996)
Current Biology
, vol.6
, Issue.8
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Scharer, O.D.3
Kawate, T.4
Addona, T.A.5
Spooner, E.6
Lane, W.S.7
Verdine, G.L.8
-
24
-
-
0030738194
-
Cloning and characterization of a mammalian 8-oxoguanine dna glycosylase
-
DOI 10.1073/pnas.94.14.7429
-
Rosenquist, T.A., Zharkov, D.O. and Grollman, A.P. (1997) Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase. Proc. Natl Acad. Sci. USA, 94, 7429-7434. (Pubitemid 27345332)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.14
, pp. 7429-7434
-
-
Rosenquist, T.A.1
Zharkov, D.O.2
Grollman, A.P.3
-
25
-
-
0034708226
-
Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
-
DOI 10.1038/35002510
-
Bruner, S.D., Norman, P.G. and Verdine, G.L. (2000) Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA. Nature, 403, 859-866. (Pubitemid 30130980)
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 859-866
-
-
Bruner, S.D.1
Norman, D.P.G.2
Verdine, G.L.3
-
26
-
-
0036290411
-
Reciprocal 'flipping' underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase
-
Bjørais, M., Seeberg, E., Luna, L., Pearl, L.H. and Barrett, T.E. (2002) Reciprocal 'flipping' underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase. J. Mol. Biol., 317, 171-177.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 171-177
-
-
Bjørais, M.1
-
27
-
-
15844379169
-
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA
-
DOI 10.1038/nature03458
-
Banerjee, A., Yang, W., Karplus, M. and Verdine, G.L. (2005) Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature, 434, 612-618. (Pubitemid 40488548)
-
(2005)
Nature
, vol.434
, Issue.7033
, pp. 612-618
-
-
Banerjee, A.1
Yang, W.2
Karplus, M.3
Verdine, G.L.4
-
28
-
-
0037205477
-
Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA
-
DOI 10.1074/jbc.M202058200
-
Gilboa, R., Zharkov, D.O., Golan, G., Fernandes, A.S., Gerchman, S.E., Matz, E., Kycia, J.H., Grollman, A.P. and Shoham, G. (2002) Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA. J. Biol. Chem., 277, 19811-9816. (Pubitemid 34967498)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.22
, pp. 19811-19816
-
-
Gilboa, R.1
Zharkov, D.O.2
Golan, G.3
Fernandes, A.S.4
Gerchman, S.E.5
Matz, E.6
Kycia, J.H.7
Grollman, A.P.8
Shoham, G.9
-
29
-
-
33847293432
-
Mechanism of interaction between human 8-oxoguanine-DNA glycosylase and AP endonuclease
-
DOI 10.1016/j.dnarep.2006.10.022, PII S1568786406003314
-
Sidorenko, V.S., Nevinsky, G.A. and Zharkov, D.O. (2007) Mechanism of interaction between human 8-oxoguanine-DNA glycosylase and AP endonuclease. DNA Repair, 6, 317-328. (Pubitemid 46329612)
-
(2007)
DNA Repair
, vol.6
, Issue.3
, pp. 317-328
-
-
Sidorenko, V.S.1
Nevinsky, G.A.2
Zharkov, D.O.3
-
31
-
-
0030952458
-
Generating programs for predicting the activity of functional sites
-
Ponomarenko, M.P., Kolchanova, A.N. and Kolchanov, N.A. (1997) Generating programs for predicting the activity of functional sites. J. Comput. Biol., 4, 83-90. (Pubitemid 27209254)
-
(1997)
Journal of Computational Biology
, vol.4
, Issue.1
, pp. 83-90
-
-
Ponomarenko, M.P.1
Kolchanova, A.N.2
Kolchanov, N.A.3
-
32
-
-
0035166143
-
ACTIVITY: A database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another
-
Ponomarenko, J.V., Furman, D.P., Frolov, A.S., Podkolodny, N.L., Orlova, G.V., Ponomarenko, M.P., Kolchanov, N.A. and Sarai, A. (2001) ACTIVITY: A database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Res., 29, 284-287. (Pubitemid 32054470)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 284-287
-
-
Ponomarenko, J.V.1
Furman, D.P.2
Frolov, A.S.3
Podkolodny, N.L.4
Orlova, G.V.5
Ponomarenko, M.P.6
Kolchanov, N.A.7
Sarai, A.8
-
33
-
-
0037814212
-
Application of the bootstrap statistical method to the tau-decay-mode problem
-
Hayes, K.G., Perl, M.L. and Efron, B. (1989) Application of the bootstrap statistical method to the tau-decay-mode problem. Phys. Rev., D39, 274-279.
-
(1989)
Phys. Rev.
, vol.D39
, pp. 274-279
-
-
Hayes, K.G.1
Perl, M.L.2
Efron, B.3
-
34
-
-
34248666540
-
Fuzzy sets
-
Zadeh, L.A. (1965) Fuzzy sets. Inf. Control, 8, 338-353.
-
(1965)
Inf. Control
, vol.8
, pp. 338-353
-
-
Zadeh, L.A.1
-
36
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer, K.J., Frank, R., Blocker, H. and Marky, L.A. (1986) Predicting DNA duplex stability from the base sequence. Proc. Natl Acad. Sci. USA, 83, 3746-3750. (Pubitemid 16062362)
-
(1986)
Proceedings of the National Academy of Sciences of the United States of America
, vol.83
, Issue.11
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blocker, H.3
Marky, L.A.4
-
37
-
-
0033399115
-
Single-stranded oligodeoxyribonucleotides are substrates of Fpg protein from Escherichia coli
-
Ishchenko, A.A., Bulychev, N.V., Maksakova, G.A., Johnson, F. and Nevinsky, G.A. (1999) Single-stranded oligodeoxyribonucleotides are substrates of Fpg protein from Escherichia coli. IUBMB Life, 48, 613-618. (Pubitemid 30043807)
-
(1999)
IUBMB Life
, vol.48
, Issue.6
, pp. 613-618
-
-
Ishchenko, A.A.1
Bulychev, N.V.2
Maksakova, G.A.3
Johnson, F.4
Nevinsky, G.A.5
-
38
-
-
0019878052
-
Uracil DNA-glycosylase from HeLa cells: General properties, substrate specificity and effect of uracil analogs
-
Krokan, H. and Wittwer, C.U. (1981) Uracil DNA-glycosylase from HeLa cells: general properties, substrate specificity and effect of uracil analogs. Nucleic Acids Res., 9, 2599-2613.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 2599-2613
-
-
Krokan, H.1
Wittwer, C.U.2
-
39
-
-
3142717771
-
Human deoxyribonucleases
-
Baranovskii, A.G., Buneva, V.N. and Nevinsky, G.A. (2004) Human deoxyribonucleases. Biochemistry, 69, 587-601.
-
(2004)
Biochemistry
, vol.69
, pp. 587-601
-
-
Baranovskii, A.G.1
Buneva, V.N.2
Nevinsky, G.A.3
-
41
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
Goodsell, D.S. and Dickerson, R.E. (1994) Bending and curvature calculations in B-DNA. Nucleic Acids Res., 22, 5497-5503.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.S.1
Dickerson, R.E.2
-
42
-
-
0000531710
-
Anisotropic elastic bending models of DNA
-
Gromiha, M.M., Munteanu, M.G., Gabrielian, A. and Pongor, S. (1996) Anisotropic elastic bending models of DNA. J. Biol. Phys., 22, 227-243. (Pubitemid 126707284)
-
(1996)
Journal of Biological Physics
, vol.22
, Issue.4
, pp. 227-243
-
-
Gromiha, M.M.1
Munteanu, M.G.2
Gabrielian, A.3
Pongor, S.4
-
43
-
-
33749986806
-
Spontaneous sharp bending of DNA: Role of melting bubbles
-
DOI 10.1093/nar/gkl394
-
Yuan, C., Rhoades, E., Lou, X.W. and Archer, L.A. (2006) Spontaneous sharp bending of DNA: role of melting bubbles. Nucleic Acids Res., 34, 4554-4560. (Pubitemid 44567054)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.16
, pp. 4554-4560
-
-
Yuan, C.1
Rhoades, E.2
Lou, X.W.3
Archer, L.A.4
-
44
-
-
0032873823
-
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins
-
Ponomarenko, M.P., Ponomarenko, J.V., Frolov, A.S., Podkolodny, N.L., Savinkova, L.K., Kolchanov, N.A. and Overton, G.C. (1999) Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. Bioinformatics, 15, 687-703. (Pubitemid 29462116)
-
(1999)
Bioinformatics
, vol.15
, Issue.7-8
, pp. 687-703
-
-
Ponomarenko, M.P.1
Ponomarenko, J.V.2
Frolov, A.S.3
Podkolodny, N.L.4
Savinkova, L.K.5
Kolchanov, N.A.6
Overton, G.C.7
-
45
-
-
0030577224
-
The algorithm of estimation of the K(m) values for primers in DNA synthesis catalyzed by human DNA polymerase
-
DOI 10.1016/S0014-5793(96)01298-7, PII S0014579396012987
-
Kolocheva, T.I., Maksakova, G.A., Zakharova, O.D. and Nevinsky, G.A. (1996) The algorithm of estimation of the Km values for primers in DNA synthesis catalyzed by human DNA polymerase a. FEBS Lett., 399, 113-116. (Pubitemid 27007964)
-
(1996)
FEBS Letters
, vol.399
, Issue.1-2
, pp. 113-116
-
-
Kolocheva, T.I.1
Maksakova, G.A.2
Zakharova, O.D.3
Nevinsky, G.A.4
-
46
-
-
24044492241
-
The DNA trackwalkers: Principles of lesion search and recognition by DNA glycosylases
-
DOI 10.1016/j.mrfmmm.2005.03.011, PII S0027510705001703
-
Zharkov, D.O. and Grollman, A.P. (2005) The DNA trackwalkers: Principles of lesion search and recognition by DNA glycosylases. Mutat. Res., 577, 24-54. (Pubitemid 41225488)
-
(2005)
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis
, vol.577
, Issue.1-2 SPEC. ISS.
, pp. 24-54
-
-
Zharkov, D.O.1
Grollman, A.P.2
-
47
-
-
0021275046
-
The selection and characterisation of two novel mutations in the overlapping promoters of the Escherichia coli galactose operon
-
DOI 10.1016/0378-1119(84)90257-9
-
Busby, S., Truelle, N., Spassky, A., Dreyfus, M. and Buc, H. (1984) The selection and characterization of two novel mutations in the overlapping promoters of the Escherichia coli galactose operon. Gene, 28, 201-209. (Pubitemid 14106419)
-
(1984)
Gene
, vol.28
, Issue.2
, pp. 201-209
-
-
Busby, S.1
Truelle, N.2
Spassky, A.3
-
48
-
-
0021191797
-
Promoter helical structure variation at the Escherichia coli polymerase interaction sites
-
Nussinov, R. (1984) Promoter helical structure variation at the Escherichia coli polymerase interaction sites. J. Biol. Chem., 259, 6798-6805. (Pubitemid 14078975)
-
(1984)
Journal of Biological Chemistry
, vol.259
, Issue.11
, pp. 6798-6805
-
-
Nussinov, R.1
-
49
-
-
0031183252
-
Computer analysis of the DNA conformational features of the eukaryotic promoter TATA box
-
Ponomarenko, M.P., Ponomarenko, I.V., Kel', A.E., Kolchanov, N.A., Karas, H., Wingender, E. and Sklenar, H. (1997) Computer analysis of conformational features of the eukaryotic TATA-box DNA promotors [in Russian]. Mol. Biol., 31, 733-740. (Pubitemid 127763649)
-
(1997)
Molekulyarnaya Biologiya
, vol.31
, Issue.4
, pp. 733-740
-
-
Ponomarenko, M.P.1
Ponomarenko, Y.V.2
Kel, A.E.3
Kolchanov, N.A.4
Karas, H.5
Wingender, E.6
Sklenar, H.7
-
50
-
-
0027312108
-
Identification of a DNA structural motif that includes the binding sites for Spi, p53 and GA-binding protein
-
MacLeod, M.C. (1993) Identification of a DNA structural motif that includes the binding sites for Spi, p53 and GA-binding protein. Nucleic Acids Res., 21, 1439-1447.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1439-1447
-
-
MacLeod, M.C.1
-
51
-
-
0029900290
-
Common DNA structural features exhibited by eukaryotic ribosomal gene promoters
-
DOI 10.1093/nar/24.12.2204
-
Marilley, M. and Pasero, P. (1996) Common DNA structural features exhibited by eukaryotic ribosomal gene promoters. Nucleic Acids Res., 24, 2204-2211. (Pubitemid 26193581)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.12
, pp. 2204-2211
-
-
Marilley, M.1
Pasero, P.2
-
52
-
-
0030048596
-
Role of base-backbone and base-base interactions in alternating DNA conformations
-
DOI 10.1016/0014-5793(95)01506-X
-
Suzuki, M., Yagi, N. and Finch, J.T. (1996) Role of base-backbone and base-base interactions in alternating DNA conformations. FEBS Lett., 379, 148-152. (Pubitemid 26037843)
-
(1996)
FEBS Letters
, vol.379
, Issue.2
, pp. 148-152
-
-
Suzuki, M.1
Yagi, N.2
Finch, J.T.3
-
53
-
-
0029859713
-
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
-
DOI 10.1093/nar/24.22.4501
-
Sugimoto, N., Nakano, S.-I., Yoneyama, M. and Honda, K.-I. (1996) Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res., 24, 4501-4505. (Pubitemid 26388637)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.22
, pp. 4501-4505
-
-
Sugimoto, N.1
Nakano, S.-I.2
Yoneyama, M.3
Honda, K.-I.4
|