Common DNA structural features exhibited by eukaryotic ribosomal gene promoters

Nucleic Acids Research

Volumn 24, Issue 12, 1996, Pages 2204-2211

  Marilley, Monique ^a   Pasero, Philippe ^a  

^a AIX MARSEILLE UNIVERSITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DNA DIRECTED RNA POLYMERASE; TRANSCRIPTION FACTOR;

ARTICLE; COMPUTER MODEL; DNA SEQUENCE; DNA STRUCTURE; EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; RIBOSOME; SEQUENCE HOMOLOGY; TAXONOMY;

ANIMALS; BASE SEQUENCE; DNA, RIBOSOMAL; EUKARYOTIC CELLS; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROMOTER REGIONS (GENETICS); SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION, GENETIC;

EUKARYOTA;

EID: 0029900290     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.12.2204     Document Type: Article

References (79)

1. Reeder, R.H. (1990) Trends Genet., 6, 390-395.
2. Sollner-Webb, B. and Tower, J. (1986) Annu. Rev. Biochem., 55, 801-830.
3. Sollner-Webb, B. and Mougey, E.B. (1991) Trends Biochem. Sci., 16, 58-62.
4. Treco, D., Brownell, E. and Arnheim, N. (1982) The Cell Nucleus. Academic Press, New York, NY, Vol. XII, pp. 101-126.
5. Sommerville, J. (1984) Nature, 310, 189-190.
6. Moss, T., Mitchelson, K. and de Winter, R.F.J. (1985) Oxford Surv. Eukaryotic Genes, 2, 207-250.
7. Grummt, I., Roth, E. and Paule, M.R. (1982) Nature, 296, 173-174.
8. Learned, R.M., Smale, S.T., Haltiner, M.M. and Tjan, R. (1983) Proc. Natl. Acad. Sci. USA, 80, 3558-3562.
9. Haltiner, M.M., Smale, S.T. and Tjan, R. (1986) Mol. Cell. Biol., 6, 227-235.
10. Jones Haltiner M., Learned, R.M. and Tjan, R. (1988) Proc. Natl. Acad. Sci. USA, 85, 669-673.
11. Grummt, I. (1982) Proc. Natl. Acad. Sci. USA, 79, 6908-6911.
12. Yamamoto, O., Takakusa, N., Mishima, Y., Kominami, R. and Muramatsu, M. (1984) Proc. Natl. Acad. Sci. USA, 81, 299-303.
13. Miller, K.G., Tower, J. and Sollner-Webb, B. (1985) Mol. Cell. Biol., 5, 554-562.
14. Clos, J., Normann, A., Öhrlein, A. and Grummt, I. (1986) Nucleic Acids Res., 14, 7581-7595.
15. Henderson, S.L. and Sollner-Webb, B. (1990) Mol. Cell. Biol., 10, 4970-4973.
16. Windle, J.J. and Sollner-Webb, B. (1986) Mol. Cell. Biol., 6, 4585-4593.
17. Reeder,R.H., Pennock, D., McStay, B., Roan, J., Tolentino, E. and Walker, P. (1987) Nucleic Acids Res., 15, 7429-7441.
18. Pape, L.K., Windle, J.J. and Sollner-Webb, B. (1990) Genes Dev., 4, 52-62.
19. Firek, S., Read, C., Smith, D.R. and Moss, T. (1990) Nucleic Acids Res., 18, 105-109.
20. Read, C., Larose, A.-M., Leblanc, B., Bannister, A.J., Firek, S., Smith, D.R. and Moss, T. (1992) J. Biol. Chem., 261, 10961-10967.
21. Kohorn, B.D. and Rae, P.M. (1983) Proc. Natl. Acad. Sci. USA, 80, 3265-3268.
22. Kohorn, B.D. and Rae, P.M. (1983) Nature, 304, 179-181.
23. Kownin, P., Lida, C.T., Brown-Shimer, S. and Paule, M.R. (1985) Nucleic Acids Res., 13, 6237-6248.
24. Kownin, P., Bateman, E. and Paule, M.R. (1988) Mol. Cell. Biol., 8, 747-753.
25. Musters, W., Knol, J., Dekker, A. F. H., van Heerikhuisen, H. and Planta, R.J. (1989) Nucleic Acids Res., 17, 9661-9678.
26. Bell, S.P., Pikaard, C.S., Reeder, R.H. and Tjan, R. (1989) Cell, 59, 489-497.
27. Pikaard, C.S., McStay, B., Schultz, M.C., Bell, S.P. and Reeder, H. (1989) Genes Dev., 3, 1779-1788.
28. Bell, S.P. Jantzen, H.-M. and Tjan, R. (1990) Genes Dev., 4, 943-954.
29. Smith, S.D., Oriahi, E., Lowe, D., Yang-Yen, H.-F., O'Mahony, D., Rose, K., Chen, K. and Rothblum, L.I. (1990) Mol. Cell. Biol., 10, 3105-3116.
30. Pikaard, C.S., Smith, S.D., Reeder, R.H. and Rothblum, L.I. (1990) Mol. Cell. Biol., 10, 3810-3812.
31. Tjan, R. and Maniatis, T. (1994) Cell, 77, 5-8.
32. Van Wye, J.D., Bronson, E.C. and Anderson, J.N. (1991) Nucleic Acids Res., 19, 5253-5261.
33. Hagerman, P.J. (1990) Annu. Rev. Biochem., 59, 755-781.
34. Perez-Martin, J., Rojo, F. and de Lorenzo, V. (1994) Microbiol. Rev., 58, 268-290.
35. Calladine, C.R. and Drew, H.R. (1992) Understanding DNA. Academic Press. New York, NY.
36. Haran, T.E., Kahn, J.D. and Crothers, D.M. (1994) J. Mol. Biol., 244, 135-143.
37. Umek, R.M. and Kowalski, D. (1987) Nucleic Acids Res., 15, 4467-4480.
38. Natale, D.A., Umek, R.M. and Kowalski, D. (1993) Nucleic Acids Res., 21, 555-560.
39. Kabsch, W., Sander, C. and Trifonov, E.N. (1982) Nucleic Acids Res., 10, 1097-1104.
40. MacLeod, M.C. (1993) Nucleic Acids Res., 21, 1439-1447.
41. Boutonnet, N., Hui, X. and Zakrzewska, K. (1993) Biopolymers, 33, 479-490.
42. Ferris, P.J. (1985) Gene, 39, 203-211.
43. Eckdahl, T.T. and Anderson, J.N. (1987) Nucleic Acids Res., 18, 1609-1612.
44. Pasero, P., Sjakste, N., Blettry, C., Got, C. and Marilley, M. (1993) Nucleic Acids Res., 21, 4703-4710.
45. Ulanovsky, L.E. and Trifonov, E.N. (1987) Nature, 326, 720-722.
46. Bolshoy, A., McNamara, P., Harrington, R.E. and Trifonov, E.N. (1991) Proc. Natl. Acad. Sci. USA, 88, 2312-2316.
47. De Santis, P., Fuà, M., Palleschi., A. and Savino, M. (1993) Biophys.Chem., 46, 193-204.
48. Breslauer, K.J., Frank, R., Blöcker, H. and Marky, L.A. (1986) Proc. Natl. Acad. Sci. USA, 83, 3746-3750.
49. Marilley, M., Pasero, P., Humbert, A., Granjeaud, S., Dayez, M., Pierrisnard, R. and Jordan, B. (1994) Microsc. Microanal. Microstruct., 5, 47-56.
50. Pasero, P. Blettry, C., Marilley, M., Jordan, B., Granjeaud, S., Dayez, M. and Humbert, A. (1994) J. Vac. Sci. Technol., B12, 1521-1525.
51. Delabre, M-L., Pasero, P., Marilley, M., Bougis, P. (1995) Biochemistry, 34, 6729-6736.
52. de Santis, P., Palleschi, A., Savino, M. and Scipioni, A. (1988) Biophys. Chem., 32, 305-317.
53. Griffith, J., Bleyman, M., Rauch, C.A., Kitchin, P.A. and Englund, P.T. (1986) Cell, 46, 717-724.
54. Muzard, G., Théveny, B. and Révet, B. (1990) EMBO J., 9, 1289-1298.
55. Ulanovsky, L., Bodner, M., Trifonov, E.N. and Choder, M. (1986) Proc. Natl. Acad. Sci. USA, 83, 862-866.
56. Zahn, K. and Blattner, Z.K. (1987) Science, 236, 416-422.
57. Boffeli, D., de Santis, P., Palleschi, A., Risuelo, G. and Savino, M. (1992) FEBS Lett., 300, 175-178.
58. de Santis, P., Palleschi, A., Savino, M. and Scipioni, A. (1992) Biophys. Chem., 42, 147-152.
59. Nair, T.M. and Kulkarni, B.D. (1994) Biophys. Chem., 48, 383-393.
60. Schroth, G.P., Siino, J.S., Cooney, C.A., Th'ng, J.P.H., Ho, P.H. and Bradbury, E.M. (1992) J. Biol. Chem., 267, 9958-9964.
61. Bach, R., Allet, B. and Crippa, M. (1981) Nucleic Acids Res., 20, 5311-5330.
62. Umek, R.M. and Kowalski, D. (1988) Cell, 52, 559-567.
63. Travers, A.A. (1992) Curr. Opin. Struct. Biol., 2, 71-77.
64. van der Vliet, P.C. and Verrijer, C.P. (1993) BioEssays, 15, 25-32.
65. Bossi, L. and Smith, D.M. (1984) Cell, 39, 643-652.
66. Wada-Kiyama, Y. and Kiyama, R. (1994) J. Biol. Chem., 269, 22238-22244.
67. Travers, A.A. (1989) Annu. Rev. Biochem., 58, 427-452.
68. Pabo, C.O. and Sauer, R.T. (1992) Annu. Rev. Biochem., 61. 1053-1095.
69. Kornberg, R.D. and Lorch, Y. (1992) Annu. Rev. Cell Biol., 8, 563-587.
70. Travers, A.A. (1994) BioEssays, 16, 657-662.
71. Paranjape, S.M. Kamakala, R.T. and Kadanoga, J.T. (1994) Annu. Rev. Biochem., 63, 266-297.
72. Lilley, D.M. (1992) Nature, 357, 282-283.
73. Bazett-Jones, D.P. Leblanc, B., Herfort, M. and Moss, T. (1994) Science, 264, 1134-1137.
74. Ramstein, J. and Lavery, R. (1988) Proc. Natl. Acad. Sci. USA, 85, 7231-7235.
75. Travers, A.A. (1990) Cell, 60, 177-180.
76. McAllister, C.F. and Achberger, E.C. (1989) J. Biol. Chem., 264, 10451-10456.
77. Bauer, B.R., Lund, R.A. and White, J.H. (1993) Proc. Natl. Acad. Sci. USA, 90, 833-837.
78. Vologodskii, A.V. and Cozzarelli, N.R. (1994) Annu. Rev. Biophys. Biomol. Struct., 23, 609-643.
79. Rudloff, U., Stunnenberg, H.G., Keaveney, M. and Grummt, I. (1994) J. Mol. Biol., 243, 840-845.