-
1
-
-
0035997347
-
The bacterial RecA protein and the recombinational DNA repair of stalled replication forks
-
Lusetti SL & Cox MM (2002) The bacterial RecA protein and the recombinational DNA repair of stalled replication forks. Annu Rev Biochem 71, 71-100.
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 71-100
-
-
Lusetti, S.L.1
Cox, M.M.2
-
2
-
-
0024240847
-
DNA sequence dependence of ATP hydrolysis by RecA protein
-
Amaratunga M & Benight AS (1988) DNA sequence dependence of ATP hydrolysis by RecA protein. Biochem Biophys Res Commun 157, 127-133.
-
(1988)
Biochem Biophys Res Commun
, vol.157
, pp. 127-133
-
-
Amaratunga, M.1
Benight, A.S.2
-
3
-
-
0021330208
-
Absorption and fluorescence studies of the binding of the recA gene product from E. coli to single-stranded and double-stranded DNA. Ionic strength dependence
-
Cazenave C, Chabbert M, Toulme JJ & Helene C (1984) Absorption and fluorescence studies of the binding of the recA gene product from E. coli to single-stranded and double-stranded DNA. Ionic strength dependence. Biochim Biophys Acta 781, 7-13.
-
(1984)
Biochim Biophys Acta
, vol.781
, pp. 7-13
-
-
Cazenave, C.1
Chabbert, M.2
Toulme, J.J.3
Helene, C.4
-
4
-
-
0019835729
-
Binding of the recA protein of Escherichia coli to single- and double-stranded DNA
-
McEntee K, Weinstock GM & Lehman IR (1981) Binding of the recA protein of Escherichia coli to single- and double-stranded DNA. J Biol Chem 256, 8835-8844.
-
(1981)
J Biol Chem
, vol.256
, pp. 8835-8844
-
-
McEntee, K.1
Weinstock, G.M.2
Lehman, I.R.3
-
5
-
-
0029786592
-
In vitro selection of preferred DNA pairing sequences by the Escherichia coli RecA protein
-
Tracy RB & Kowalczykowski SC (1996) In vitro selection of preferred DNA pairing sequences by the Escherichia coli RecA protein. Genes Dev 10, 1890-1903.
-
(1996)
Genes Dev
, vol.10
, pp. 1890-1903
-
-
Tracy, R.B.1
Kowalczykowski, S.C.2
-
6
-
-
0026666652
-
Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible
-
Yu, X & Egelman EH (1992) Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible. J Mol Biol 227, 334-346.
-
(1992)
J Mol Biol
, vol.227
, pp. 334-346
-
-
Yu, X.1
Egelman, E.H.2
-
7
-
-
0022360935
-
The direction of RecA protein assembly onto single strand DNA is the same as the direction of strand assimilation during strand exchange
-
Register JC, 3rd & Griffith J (1985) The direction of RecA protein assembly onto single strand DNA is the same as the direction of strand assimilation during strand exchange. J Biol Chem 260, 12308-12312.
-
(1985)
J Biol Chem
, vol.260
, pp. 12308-12312
-
-
Register III, J.C.1
Griffith, J.2
-
8
-
-
0035824581
-
RecA protein filaments disassemble in the 5′-to 3′ direction on single-stranded DNA
-
Bork JM, Cox MM & Inman RB (2001) RecA protein filaments disassemble in the 5′-to 3′ direction on single-stranded DNA. J Biol Chem 276, 45740-45743.
-
(2001)
J Biol Chem
, vol.276
, pp. 45740-45743
-
-
Bork, J.M.1
Cox, M.M.2
Inman, R.B.3
-
9
-
-
0020478259
-
The helicity of DNA in complexes with recA protein
-
Stasiak A & Di Capua E (1982) The helicity of DNA in complexes with recA protein. Nature 299, 185-186.
-
(1982)
Nature
, vol.299
, pp. 185-186
-
-
Stasiak, A.1
Di Capua, E.2
-
10
-
-
0024511687
-
Extent of duplex DNA underwinding induced by RecA protein binding in the presence of ATP
-
Pugh BF, Schutte BC & Cox MM (1989) Extent of duplex DNA underwinding induced by RecA protein binding in the presence of ATP. J Mol Biol 205, 487-492.
-
(1989)
J Mol Biol
, vol.205
, pp. 487-492
-
-
Pugh, B.F.1
Schutte, B.C.2
Cox, M.M.3
-
11
-
-
0024843435
-
Visualization of RecA protein and its complexes with DNA by quick-freeze/deepetch electron microscopy
-
Heuser J & Griffith J (1989) Visualization of RecA protein and its complexes with DNA by quick-freeze/deepetch electron microscopy. J Mol Biol 210, 473-484.
-
(1989)
J Mol Biol
, vol.210
, pp. 473-484
-
-
Heuser, J.1
Griffith, J.2
-
12
-
-
0032481374
-
The function of the secondary DNA-binding site of RecA protein during DNA strand exchange
-
Mazin AV & Kowalczykowski SC (1998) The function of the secondary DNA-binding site of RecA protein during DNA strand exchange. EMBO J 17, 1161-1168.
-
(1998)
EMBO J
, vol.17
, pp. 1161-1168
-
-
Mazin, A.V.1
Kowalczykowski, S.C.2
-
13
-
-
0028310430
-
A parallel DNA triplex as a model for the intermediate in homologous recombination
-
Zhurkin VB, Raghunathan G, Ulyanov NB, Camerini-Otero RD & Jernigan RL (1994) A parallel DNA triplex as a model for the intermediate in homologous recombination. J Mol Biol 239, 181-200.
-
(1994)
J Mol Biol
, vol.239
, pp. 181-200
-
-
Zhurkin, V.B.1
Raghunathan, G.2
Ulyanov, N.B.3
Camerini-Otero, R.D.4
Jernigan, R.L.5
-
14
-
-
0028948224
-
Probing the structure of a putative intermediate in homologous recombination: The third strand in the parallel DNA triplex is in contact with the major groove of the duplex
-
Kim MG, Zhurkin VB, Jernigan RL & Camerini-Otero RD (1995) Probing the structure of a putative intermediate in homologous recombination: the third strand in the parallel DNA triplex is in contact with the major groove of the duplex. J Mol Biol 247, 874-889.
-
(1995)
J Mol Biol
, vol.247
, pp. 874-889
-
-
Kim, M.G.1
Zhurkin, V.B.2
Jernigan, R.L.3
Camerini-Otero, R.D.4
-
15
-
-
0030891288
-
DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA
-
Zhou X & Adzuma K (1997) DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA. Biochemistry 36, 4650-4661.
-
(1997)
Biochemistry
, vol.36
, pp. 4650-4661
-
-
Zhou, X.1
Adzuma, K.2
-
16
-
-
0021337860
-
Role of RecA protein spiral filaments in genetic recombination
-
Howard-Flanders P, West SC & Stasiak A (1984) Role of RecA protein spiral filaments in genetic recombination. Nature 309, 215-219.
-
(1984)
Nature
, vol.309
, pp. 215-219
-
-
Howard-Flanders, P.1
West, S.C.2
Stasiak, A.3
-
17
-
-
0030633568
-
RecA protein: Structure, function, and role in recombinational DNA repair
-
Roca AI & Cox MM (1997) RecA protein: structure, function, and role in recombinational DNA repair. Prog Nucleic Acid Res Mol Biol 56, 129-223.
-
(1997)
Prog Nucleic Acid Res Mol Biol
, vol.56
, pp. 129-223
-
-
Roca, A.I.1
Cox, M.M.2
-
18
-
-
4644225318
-
Exchange of DNA Base Pairs that Coincides with Recognition of Homology Promoted by E. coli RecA Protein
-
Folta-Stogniew E, O'Malley S, Gupta R, Anderson KS & Radding CM (2004) Exchange of DNA Base Pairs that Coincides with Recognition of Homology Promoted by E. coli RecA Protein. Mol Cell 15, 965-975.
-
(2004)
Mol Cell
, vol.15
, pp. 965-975
-
-
Folta-Stogniew, E.1
O'Malley, S.2
Gupta, R.3
Anderson, K.S.4
Radding, C.M.5
-
19
-
-
4644220324
-
Synaptic complex revisited; a homologous recombinase flips and switches bases
-
Voloshin ON & Camerini-Otero RD (2004) Synaptic complex revisited; a homologous recombinase flips and switches bases. Mol Cell 15, 846-847.
-
(2004)
Mol Cell
, vol.15
, pp. 846-847
-
-
Voloshin, O.N.1
Camerini-Otero, R.D.2
-
20
-
-
0029620927
-
Photocrosslinks between single-stranded DNA and Escherichia coli RecA protein map to loops L1 (amino-acid residues 157-164) and L2 (amino-acid residues 195-209)
-
Malkov VA & Camerini-Otero RD (1995) Photocrosslinks between single-stranded DNA and Escherichia coli RecA protein map to loops L1 (amino-acid residues 157-164) and L2 (amino-acid residues 195-209). J Biol Chem 270, 30230-30233.
-
(1995)
J Biol Chem
, vol.270
, pp. 30230-30233
-
-
Malkov, V.A.1
Camerini-Otero, R.D.2
-
21
-
-
0028921350
-
Interaction of Tyr103 and Tyr264 of the RecA protein with DNA and nucleotide cofactors. Fluorescence study of engineered proteins
-
Morimatsu K, Horii T & Takahashi M (1995) Interaction of Tyr103 and Tyr264 of the RecA protein with DNA and nucleotide cofactors. Fluorescence study of engineered proteins. Eur J Biochem 228, 779-785.
-
(1995)
Eur J Biochem
, vol.228
, pp. 779-785
-
-
Morimatsu, K.1
Horii, T.2
Takahashi, M.3
-
22
-
-
0028947467
-
Analysis of the DNA binding site of Escherichia coli RecA protein
-
Morimatsu K & Horii T (1995) Analysis of the DNA binding site of Escherichia coli RecA protein. Adv Biophys 31, 23-48.
-
(1995)
Adv Biophys
, vol.31
, pp. 23-48
-
-
Morimatsu, K.1
Horii, T.2
-
23
-
-
0035895428
-
Interaction of tyrosine 65 of RecA protein with the first and second DNA strands
-
Morimatsu K, Funakoshi T, Horii T & Takahashi M (2001) Interaction of tyrosine 65 of RecA protein with the first and second DNA strands. J Mol Biol 306, 189-199.
-
(2001)
J Mol Biol
, vol.306
, pp. 189-199
-
-
Morimatsu, K.1
Funakoshi, T.2
Horii, T.3
Takahashi, M.4
-
24
-
-
17544384169
-
The DNA binding site (s) of the Escherichia coli RecA protein
-
Rehrauer WM & Kowalczykowski SC (1996) The DNA binding site (s) of the Escherichia coli RecA protein. J Biol Chem 271, 11996-12002.
-
(1996)
J Biol Chem
, vol.271
, pp. 11996-12002
-
-
Rehrauer, W.M.1
Kowalczykowski, S.C.2
-
25
-
-
0033087921
-
Possibilities of the method of step-by-step complication of ligand structure in studies of protein-nucleic acid interactions: Mechanisms of functioning of some replication, repair, topoisomerization, nd restriction enzymes
-
Bugreev DV & Nevinsky GA (1999) Possibilities of the method of step-by-step complication of ligand structure in studies of protein-nucleic acid interactions: mechanisms of functioning of some replication, repair, topoisomerization, nd restriction enzymes. Biochemistry (Mosc) 64, 237-249.
-
(1999)
Biochemistry (Mosc)
, vol.64
, pp. 237-249
-
-
Bugreev, D.V.1
Nevinsky, G.A.2
-
26
-
-
5444244823
-
The role of specific and nonspecific interactions in enzymatic recognition and conversion of long DNA
-
Nevinsky GA (2004) The role of specific and nonspecific interactions in enzymatic recognition and conversion of long DNA. Mol Biol (Mosc) 38, 36-662.
-
(2004)
Mol Biol (Mosc)
, vol.38
, pp. 36-662
-
-
Nevinsky, G.A.1
-
27
-
-
5444241653
-
Structural, thermodynamic, and kinetic basis of DNA- and RNA-dependent enzymes functioning. Important role of weak nonspecific additive interactions between enzymes and long nucleic acids for their recognition and transformation
-
(Uversky VN, ed). Research Signpost, Fort P.O., India
-
Nevinsky GA (2003) Structural, thermodynamic, and kinetic basis of DNA- and RNA-dependent enzymes functioning. Important role of weak nonspecific additive interactions between enzymes and long nucleic acids for their recognition and transformation. In Protein Structures. Kaleidoscope of Structural Properties and Functions, (Uversky VN, ed), pp. 133-222. Research Signpost, Fort P.O., India.
-
(2003)
Protein Structures. Kaleidoscope of Structural Properties and Functions
, pp. 133-222
-
-
Nevinsky, G.A.1
-
28
-
-
0032378903
-
Uracil DNA glycosylase: Interpretation of X-ray data in the light of kinetic and thermodynamic studies
-
Vinogradova NL, Bulychev NV, Maksakova GA, Johnson F & Nevinskii GA (1998) Uracil DNA glycosylase: interpretation of X-ray data in the light of kinetic and thermodynamic studies. Mol Biol (Mosc) 32, 489-499.
-
(1998)
Mol Biol (Mosc)
, vol.32
, pp. 489-499
-
-
Vinogradova, N.L.1
Bulychev, N.V.2
Maksakova, G.A.3
Johnson, F.4
Nevinskii, G.A.5
-
29
-
-
0037129958
-
Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli
-
Ishchenko AA, Vasilenko NL, Sinitsina OI, Yamkovoi VI, Fedorova OS, Douglas KT & Nevinsky GA (2002) Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli Biochemistry 41, 7540-7548.
-
(2002)
Biochemistry
, vol.41
, pp. 7540-7548
-
-
Ishchenko, A.A.1
Vasilenko, N.L.2
Sinitsina, O.I.3
Yamkovoi, V.I.4
Fedorova, O.S.5
Douglas, K.T.6
Nevinsky, G.A.7
-
30
-
-
0037022175
-
Stopped-flow kinetic studies of the interaction between Escherichia coli Fpg protein and DNA substrates
-
Fedorova OS, Nevinsky GA, Koval VV, Ishchenko AA, Vasilenko NL & Douglas KT (2002) Stopped-flow kinetic studies of the interaction between Escherichia coli Fpg protein and DNA substrates. Biochemistry 41, 1520-1528.
-
(2002)
Biochemistry
, vol.41
, pp. 1520-1528
-
-
Fedorova, O.S.1
Nevinsky, G.A.2
Koval, V.V.3
Ishchenko, A.A.4
Vasilenko, N.L.5
Douglas, K.T.6
-
31
-
-
4944240061
-
Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta
-
Beloglazova NG, Kirpota OO, Starostin KV, Ishchenko AA, Yamkovoy VI, Zharkov DO, Douglas KT & Nevinsky GA (2004) Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta. Nucleic Acids Res 32, 5134-5146.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5134-5146
-
-
Beloglazova, N.G.1
Kirpota, O.O.2
Starostin, K.V.3
Ishchenko, A.A.4
Yamkovoy, V.I.5
Zharkov, D.O.6
Douglas, K.T.7
Nevinsky, G.A.8
-
32
-
-
0034871331
-
Interaction of endonuclease EcoR1 with short specific and nonspecific oligonucleotides
-
Kolocheva TI, Maksakova GA, Bugreev DV & Nevinsky GA (2001) Interaction of endonuclease EcoR1 with short specific and nonspecific oligonucleotides. IUBMB Life 51, 189-195.
-
(2001)
IUBMB Life
, vol.51
, pp. 189-195
-
-
Kolocheva, T.I.1
Maksakova, G.A.2
Bugreev, D.V.3
Nevinsky, G.A.4
-
33
-
-
0043166967
-
Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase
-
Bugreev DV, Baranova S, Zakharova OD, Parissi V, Desjobert C, Sottofattori E, Balbi A, Litvak S, Tarrago-Litvak L & Nevinsky GA (2003) Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase. Biochemistry 42, 9235-9247.
-
(2003)
Biochemistry
, vol.42
, pp. 9235-9247
-
-
Bugreev, D.V.1
Baranova, S.2
Zakharova, O.D.3
Parissi, V.4
Desjobert, C.5
Sottofattori, E.6
Balbi, A.7
Litvak, S.8
Tarrago-Litvak, L.9
Nevinsky, G.A.10
-
34
-
-
0037265920
-
The mechanism of the supercoiled DNA recognition by the eukaryotic type I topoisomerases. I. The enzyme interaction with nonspecific oligonucleotides
-
Bugreev DV, Buneva VN, Sinitsyna OI & Nevinskii GA (2003) The mechanism of the supercoiled DNA recognition by the eukaryotic type I topoisomerases. I. The enzyme interaction with nonspecific oligonucleotides. Bioorg Khim (Mosc) 29, 143-154.
-
(2003)
Bioorg Khim (Mosc)
, vol.29
, pp. 143-154
-
-
Bugreev, D.V.1
Buneva, V.N.2
Sinitsyna, O.I.3
Nevinskii, G.A.4
-
35
-
-
0038542074
-
The mechanism of supercoiled DNA recognition by eukaryotic type I topoisomerases: II. A comparison of the enzyme interaction with specific and nonspecific oligonucleotides
-
Bugreev DV, Sinitsyna OI, Buneva VN & Nevinskii GA (2003) The mechanism of supercoiled DNA recognition by eukaryotic type I topoisomerases: II. A comparison of the enzyme interaction with specific and nonspecific oligonucleotides. Bioorg Khim (Mosc) 29, 249-262.
-
(2003)
Bioorg Khim (Mosc)
, vol.29
, pp. 249-262
-
-
Bugreev, D.V.1
Sinitsyna, O.I.2
Buneva, V.N.3
Nevinskii, G.A.4
-
36
-
-
0030460712
-
Interaction of the RecA protein of Escherichia coli with single-stranded oligodeoxyribonucleotides
-
Bianco PR & Weinstock GM (1996) Interaction of the RecA protein of Escherichia coli with single-stranded oligodeoxyribonucleotides. Nucleic Acids Res 24, 4933-4939.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4933-4939
-
-
Bianco, P.R.1
Weinstock, G.M.2
-
37
-
-
0022826070
-
Topography of the interaction of recA protein with single-stranded deoxyoligonucleotides
-
Leahy MC & Radding CM (1986) Topography of the interaction of recA protein with single-stranded deoxyoligonucleotides. J Biol Chem 261, 6954-6960.
-
(1986)
J Biol Chem
, vol.261
, pp. 6954-6960
-
-
Leahy, M.C.1
Radding, C.M.2
-
39
-
-
0030957796
-
Thermochemical and kinetic evidence for nucleotide-sequence-dependent RecA-DNA interactions
-
Wittung P, Ellouze C, Maraboeuf F, Takahashi M & Norden B (1997) Thermochemical and kinetic evidence for nucleotide-sequence-dependent RecA-DNA interactions. Eur J Biochem 245, 715-719.
-
(1997)
Eur J Biochem
, vol.245
, pp. 715-719
-
-
Wittung, P.1
Ellouze, C.2
Maraboeuf, F.3
Takahashi, M.4
Norden, B.5
-
40
-
-
8244248085
-
The RecA enzyme of Escherichia coli and recombination assays
-
McEntee K & Weinstock GM (1981) The RecA enzyme of Escherichia coli and recombination assays. Enzymes 14, 445-470.
-
(1981)
Enzymes
, vol.14
, pp. 445-470
-
-
McEntee, K.1
Weinstock, G.M.2
-
41
-
-
72849180876
-
The method of reaction of desoxyribonucleic acid with nitrous acid
-
Schuster H (1960) The method of reaction of desoxyribonucleic acid with nitrous acid [in German]. Z Naturforsch 15B, 298-304.
-
(1960)
Z Naturforsch
, vol.15 B
, pp. 298-304
-
-
Schuster, H.1
-
42
-
-
20444482707
-
Base specificity in the induction of mutations by nitrous acid in phage T-2
-
Vielmetter W & Schuster H (1960) Base specificity in the induction of mutations by nitrous acid in phage T-2 [in German]. Z Naturforsch 15B, 304-311.
-
(1960)
Z Naturforsch
, vol.15 B
, pp. 304-311
-
-
Vielmetter, W.1
Schuster, H.2
-
43
-
-
0031090656
-
Isolation of 8-oxoguanine-DNA-glycosylase from Escherichia coli and substrate specificity of the enzyme
-
Ishchenko AA, Bulychev NV, Zharkov DO, Maksakova GA, Johnson F & Nevinskii GA (1997) Isolation of 8-oxoguanine-DNA-glycosylase from Escherichia coli and substrate specificity of the enzyme. Mol Biol (Mosc] 31, 332-337.
-
(1997)
Mol Biol (Mosc]
, vol.31
, pp. 332-337
-
-
Ishchenko, A.A.1
Bulychev, N.V.2
Zharkov, D.O.3
Maksakova, G.A.4
Johnson, F.5
Nevinskii, G.A.6
-
45
-
-
0019862134
-
A simple and rapid procedure for the large scale purification of the recA protein of Escherichia coli
-
Cox MM, McEntee K & Lehman IR (1981) A simple and rapid procedure for the large scale purification of the recA protein of Escherichia coli. J Biol Chem 256, 4676-4467.
-
(1981)
J Biol Chem
, vol.256
, pp. 4676-4467
-
-
Cox, M.M.1
McEntee, K.2
Lehman, I.R.3
|