-
1
-
-
0032601403
-
HIV-1 integrase: Structural organization, conformational changes, and catalysis
-
Asante-Appiah, E., and Skalka, A. M. (1999) HIV-1 integrase: structural organization, conformational changes, and catalysis, Adv. Virus Res. 52, 351-369.
-
(1999)
Adv. Virus Res.
, vol.52
, pp. 351-369
-
-
Asante-Appiah, E.1
Skalka, A.M.2
-
2
-
-
0024431589
-
The avian retroviral integration protein cleaves the terminal sequences of linear viral DNA at the in vivo sites of integration
-
Katzman, M., Katz, R. A., Skalka, A. M., and Leis, J. (1989) The avian retroviral integration protein cleaves the terminal sequences of linear viral DNA at the in vivo sites of integration, J. Virol. 63, 5319-5327.
-
(1989)
J. Virol.
, vol.63
, pp. 5319-5327
-
-
Katzman, M.1
Katz, R.A.2
Skalka, A.M.3
Leis, J.4
-
3
-
-
0024340289
-
Structure of the termini of DNA intermediates in the integration of retroviral DNA: Dependence on IN function and terminal DNA sequence
-
Roth, M. J., Schwartzberg, P. L., and Goff, S. P. (1989) Structure of the termini of DNA intermediates in the integration of retroviral DNA: dependence on IN function and terminal DNA sequence, Cell 58, 47-54.
-
(1989)
Cell
, vol.58
, pp. 47-54
-
-
Roth, M.J.1
Schwartzberg, P.L.2
Goff, S.P.3
-
4
-
-
0025031786
-
The integrase protein of Moloney murine leukemia virus processes the viral DNA ends and accomplishes their integration in vitro
-
Craigie, R., Fujiwara, T., and Bushman, F. (1990) The integrase protein of Moloney murine leukemia virus processes the viral DNA ends and accomplishes their integration in vitro, Cell 62, 829-837.
-
(1990)
Cell
, vol.62
, pp. 829-837
-
-
Craigie, R.1
Fujiwara, T.2
Bushman, F.3
-
5
-
-
0025011051
-
The avian retroviral IN protein is both necessary and sufficient for integrative recombination in vitro
-
Katz, R. A., Merkel, G., Kulkosky, J., Leis, J., and Skalka, A. M. (1990) The avian retroviral IN protein is both necessary and sufficient for integrative recombination in vitro, Cell 63, 87-95.
-
(1990)
Cell
, vol.63
, pp. 87-95
-
-
Katz, R.A.1
Merkel, G.2
Kulkosky, J.3
Leis, J.4
Skalka, A.M.5
-
6
-
-
0032608690
-
Substrate recognition by retroviral integrases
-
Katzman, M., and Katz, R. A. (1999) Substrate recognition by retroviral integrases, Adv. Virus Res. 52, 371-395.
-
(1999)
Adv. Virus Res.
, vol.52
, pp. 371-395
-
-
Katzman, M.1
Katz, R.A.2
-
7
-
-
0031935582
-
Mapping viral DNA specificity to the central regions of integrase by using functional human immunodeficiency virus type 1/visna virus chimeric proteins
-
Katzman, M., and Sudol, M. (1998) Mapping viral DNA specificity to the central regions of integrase by using functional human immunodeficiency virus type 1/visna virus chimeric proteins, J. Virol. 72, 1744-1753.
-
(1998)
J. Virol.
, vol.72
, pp. 1744-1753
-
-
Katzman, M.1
Sudol, M.2
-
8
-
-
0025851273
-
Structural aspects of protein-DNA recognition
-
Freemont, P. S., Lane, A. N., and Sanderson, M. R. (1991) Structural aspects of protein-DNA recognition, Biochem. J. 278, 1-23.
-
(1991)
Biochem. J.
, vol.278
, pp. 1-23
-
-
Freemont, P.S.1
Lane, A.N.2
Sanderson, M.R.3
-
9
-
-
21844482721
-
Important role of weak interactions in long DNA and RNA molecules recognition by enzymes
-
Nevinsky, G. A. (1995) Important role of weak interactions in long DNA and RNA molecules recognition by enzymes (a review), Mol. Biol. (Moscow) 29, 6-19.
-
(1995)
Mol. Biol. (Moscow)
, vol.29
, pp. 6-19
-
-
Nevinsky, G.A.1
-
10
-
-
0033087921
-
Possibilities of the method of step-by-step complication of ligand structure in studies of protein-nucleic acid interactions: Mechanisms of functioning of some replication, repair, topoisomerization, and restriction enzymes
-
Bugreev, D. V., and Nevinsky, G. A. (1999) Possibilities of the method of step-by-step complication of ligand structure in studies of protein-nucleic acid interactions: mechanisms of functioning of some replication, repair, topoisomerization, and restriction enzymes, Biochemistry (Moscow) 64, 237-249.
-
(1999)
Biochemistry (Moscow)
, vol.64
, pp. 237-249
-
-
Bugreev, D.V.1
Nevinsky, G.A.2
-
11
-
-
0025203657
-
The energetic basis of specificity in the Eco RI endonuclease - DNA interaction
-
Lesser, D. R., Kurpiewski, M. R., and Jen-Jacobson, L. (1990) The energetic basis of specificity in the Eco RI endonuclease - DNA interaction, Science 250, 776-786.
-
(1990)
Science
, vol.250
, pp. 776-786
-
-
Lesser, D.R.1
Kurpiewski, M.R.2
Jen-Jacobson, L.3
-
12
-
-
0035937250
-
The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC
-
Engler, L. E., Sapienza, P., Dorner, L. F., Kucera, R., Schildkraut, I., and Jen-Jacobson, L. (2001) The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC, J. Mol. Biol. 307, 619-636.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 619-636
-
-
Engler, L.E.1
Sapienza, P.2
Dorner, L.F.3
Kucera, R.4
Schildkraut, I.5
Jen-Jacobson, L.6
-
13
-
-
0031591392
-
Specific binding by EcoRV endonuclease to its DNA recognition site GATATC
-
Engler, L. E., Welch, K. K., and Jen-Jacobson, L. (1997) Specific binding by EcoRV endonuclease to its DNA recognition site GATATC, J. Mol. Biol. 269, 82-101.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 82-101
-
-
Engler, L.E.1
Welch, K.K.2
Jen-Jacobson, L.3
-
14
-
-
0030736323
-
Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state
-
Jen-Jacobson, L. (1997) Protein-DNA recognition complexes: conservation of structure and binding energy in the transition state, Biopolymers 44, 153-180.
-
(1997)
Biopolymers
, vol.44
, pp. 153-180
-
-
Jen-Jacobson, L.1
-
15
-
-
0035816212
-
Specific and nonspecific interactions of integration host factor with DNA: Thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding
-
Holbrook, J. A., Tsodikov, O. V., Saecker, R. M., and Record, M. T., Jr. (2001) Specific and nonspecific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding, J. Mol. Biol. 310, 379-401.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 379-401
-
-
Holbrook, J.A.1
Tsodikov, O.V.2
Saecker, R.M.3
Record M.T., Jr.4
-
16
-
-
0034815433
-
Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer
-
Tsodikov, O. V., Holbrook, J. A., Shkel, I. A., and Record, M. T., Jr. (2001) Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer, Biophys. J. 81, 1960-1969.
-
(2001)
Biophys. J.
, vol.81
, pp. 1960-1969
-
-
Tsodikov, O.V.1
Holbrook, J.A.2
Shkel, I.A.3
Record M.T., Jr.4
-
17
-
-
0034254326
-
Changes in dynamical behavior of the retinoid X receptor DNA-binding domain upon binding to a 14 base-pair DNA half site
-
van Tilborg, P. J., Czisch, M., Mulder, F. A., Folkers, G. E., Bonvin, A. M., Nair, M., Boelens, R., and Kaptein, R. (2000) Changes in dynamical behavior of the retinoid X receptor DNA-binding domain upon binding to a 14 base-pair DNA half site, Biochemistry 39, 8747-8757.
-
(2000)
Biochemistry
, vol.39
, pp. 8747-8757
-
-
Van Tilborg, P.J.1
Czisch, M.2
Mulder, F.A.3
Folkers, G.E.4
Bonvin, A.M.5
Nair, M.6
Boelens, R.7
Kaptein, R.8
-
18
-
-
0037124326
-
Plasticity in protein - DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain
-
Kalodimos, C. G., Bonvin, A. M., Salinas, R. K., Wechselberger, R., Boelens, R., and Kaptein, R. (2002) Plasticity in protein - DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain, EMBO J. 21, 2866-2876.
-
(2002)
EMBO J.
, vol.21
, pp. 2866-2876
-
-
Kalodimos, C.G.1
Bonvin, A.M.2
Salinas, R.K.3
Wechselberger, R.4
Boelens, R.5
Kaptein, R.6
-
19
-
-
0033038422
-
High affinity interaction of HIV-1 integrase with specific and nonspecific single-stranded short oligonucleotides
-
Caumont, A., Jamieson, G., Richard de Soultrait, V., Parissi, V., Fournier, M., Zakharova, O. D., Bayandin, R., Litvak, S., Tarrago-Litvak, L., and Nevinsky, G. A. (1999) High affinity interaction of HIV-1 integrase with specific and nonspecific single-stranded short oligonucleotides, FEBS Lett. 455, 154-158.
-
(1999)
FEBS Lett.
, vol.455
, pp. 154-158
-
-
Caumont, A.1
Jamieson, G.2
De Soultrait, V.R.3
Parissi, V.4
Fournier, M.5
Zakharova, O.D.6
Bayandin, R.7
Litvak, S.8
Tarrago-Litvak, L.9
Nevinsky, G.A.10
-
20
-
-
0031529331
-
Isolation of 8-oxoguanine-DNA glycosylase from Escherichia coli and studies on its substrate specificity
-
Ishchenko, A. A., Bulychev, N. V., Zharkov, D. O., Maksakova, G. A., Johnson, F., and Nevinsky, G. A. (1997) Isolation of 8-oxoguanine-DNA glycosylase from Escherichia coli and studies on its substrate specificity, Mol. Biol. (Moscow) 31, 278-283.
-
(1997)
Mol. Biol. (Moscow)
, vol.31
, pp. 278-283
-
-
Ishchenko, A.A.1
Bulychev, N.V.2
Zharkov, D.O.3
Maksakova, G.A.4
Johnson, F.5
Nevinsky, G.A.6
-
21
-
-
0025797517
-
An improved method for the preparation of the phosphoramidites of modified 2′-deoxynucleotides: Incorporation of oxo-2′-deoxy-7H-guanosine into synthetic oligomers
-
Bodepudi, V., Iden, C. R., and Johnson, F. (1991) An improved method for the preparation of the phosphoramidites of modified 2′-deoxynucleotides: incorporation of oxo-2′-deoxy-7H-guanosine into synthetic oligomers, Nucleosides Nucleotides 10, 755-761.
-
(1991)
Nucleosides Nucleotides
, vol.10
, pp. 755-761
-
-
Bodepudi, V.1
Iden, C.R.2
Johnson, F.3
-
22
-
-
0001606581
-
-
CRC, Boca Raton, FL
-
Fasman, G. D., Ed. (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids, Vol. 1, pp 589, CRC, Boca Raton, FL.
-
(1975)
Handbook of Biochemistry and Molecular Biology: Nucleic Acids
, vol.1
, pp. 589
-
-
Fasman, G.D.1
-
23
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, New York
-
Maniatis, T., Fritsch, E. F., and Sambrook, J. (1982) Molecular Cloning. A Laboratory Manual, Cold Spring Harbor Laboratory, New York.
-
(1982)
Molecular Cloning. A Laboratory Manual
-
-
Maniatis, T.1
Fritsch, E.F.2
Sambrook, J.3
-
26
-
-
0030052172
-
Application of the small-angle X-ray scattering technique for the study of the two-step equilibrium enzyme - Substrate interactions
-
Tuzikov, F. V., Zinoviev, V. V., Vavilin, V. I., and Malygin, E. G. (1996) Application of the small-angle X-ray scattering technique for the study of the two-step equilibrium enzyme - substrate interactions, Biopolymers 38, 131-139.
-
(1996)
Biopolymers
, vol.38
, pp. 131-139
-
-
Tuzikov, F.V.1
Zinoviev, V.V.2
Vavilin, V.I.3
Malygin, E.G.4
-
28
-
-
0034682511
-
Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: A model for viral DNA binding
-
Chen, J. C., Krucinski, J., Miercke, L. J., Finer-Moore, J. S., Tang, A. H., Leavitt, A. D., and Stroud, R. M. (2000) Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding, Proc. Natl. Acad. Sci. U.S.A. 97, 8233-8238.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 8233-8238
-
-
Chen, J.C.1
Krucinski, J.2
Miercke, L.J.3
Finer-Moore, J.S.4
Tang, A.H.5
Leavitt, A.D.6
Stroud, R.M.7
-
29
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer, K. J., Frank, R., Blocker, H., and Marky, L. A. (1986) Predicting DNA duplex stability from the base sequence, Proc. Natl. Acad. Sci. U.S.A. 83, 3746-3750.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blocker, H.3
Marky, L.A.4
-
30
-
-
0030922072
-
A metal-induced conformational change and activation in HIV-1 integrase
-
Asante-Appiah, E., and Skalka, A. M. (1997) A metal-induced conformational change and activation in HIV-1 integrase, J. Biol. Chem. 272, 16196-16205.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 16196-16205
-
-
Asante-Appiah, E.1
Skalka, A.M.2
-
31
-
-
0033614815
-
Divalent cations stimulate preferential recognition of a viral DNA end by HIV-1 integrase
-
Yi, J., Asante-Appiah, E., and Skalka, A. M. (1999) Divalent cations stimulate preferential recognition of a viral DNA end by HIV-1 integrase, Biochemistry 38, 8458-8468.
-
(1999)
Biochemistry
, vol.38
, pp. 8458-8468
-
-
Yi, J.1
Asante-Appiah, E.2
Skalka, A.M.3
-
32
-
-
0034622521
-
Oligomeric states of the HIV-1 integrase as measured by time-resolved fluorescence anisotropy
-
Deprez, E., Tauc, P., Leh, H., Mouscadet, J. F., Auclair, C., and Brochon, J. C. (2000) Oligomeric states of the HIV-1 integrase as measured by time-resolved fluorescence anisotropy, Biochemistry 39, 9275-9284.
-
(2000)
Biochemistry
, vol.39
, pp. 9275-9284
-
-
Deprez, E.1
Tauc, P.2
Leh, H.3
Mouscadet, J.F.4
Auclair, C.5
Brochon, J.C.6
-
33
-
-
0032457973
-
Determination of the fraction composition of blood lipoproteins by the small-angle X-ray scatterng technique
-
Tuzikov, F. V., Tuzikova, N. A., Panin, L. E., Nikitin, Y. P., and Krylova, I. N. (1998) Determination of the fraction composition of blood lipoproteins by the small-angle X-ray scatterng technique, Membr. Cell. Biol. 12, 521-536.
-
(1998)
Membr. Cell. Biol.
, vol.12
, pp. 521-536
-
-
Tuzikov, F.V.1
Tuzikova, N.A.2
Panin, L.E.3
Nikitin, Y.P.4
Krylova, I.N.5
-
34
-
-
0037129958
-
Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli
-
Ishchenko, A. A., Vasilenko, N. L., Sinitsina, O. I., Yamkovoy, V. I., Fedorova, O. S., Douglas, K. T., Nevinsky, G. A. (2002) Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli, Biochemistry 41, 7540-7548.
-
(2002)
Biochemistry
, vol.41
, pp. 7540-7548
-
-
Ishchenko, A.A.1
Vasilenko, N.L.2
Sinitsina, O.I.3
Yamkovoy, V.I.4
Fedorova, O.S.5
Douglas, K.T.6
Nevinsky, G.A.7
-
35
-
-
0026537415
-
Both substrate and target oligonucleotide sequences affect in vitro integration mediated by HIV-1 integrase protein produced in Saccharomyces cerevisiae
-
Leavitt, A. D., Rose, R. B., and Varmus, H. E. (1992) Both substrate and target oligonucleotide sequences affect in vitro integration mediated by HIV-1 integrase protein produced in Saccharomyces cerevisiae, J. Virol. 66, 2359-2368.
-
(1992)
J. Virol.
, vol.66
, pp. 2359-2368
-
-
Leavitt, A.D.1
Rose, R.B.2
Varmus, H.E.3
-
36
-
-
0029861955
-
Influence of subterminal viral DNA nucleotides on differential susceptibility to cleavage by human immunodeficiency virus type 1 and visna virus integrases
-
Katzman, M., and Sudol, M. (1996) Influence of subterminal viral DNA nucleotides on differential susceptibility to cleavage by human immunodeficiency virus type 1 and visna virus integrases, J. Virol. 70, 9069-9073.
-
(1996)
J. Virol.
, vol.70
, pp. 9069-9073
-
-
Katzman, M.1
Sudol, M.2
-
37
-
-
0031028292
-
Functional identification of nucleotides conferring substrate specificity to retroviral integrase reactions
-
Balakrishnan, M., and Jonsson, C. B. (1997) Functional identification of nucleotides conferring substrate specificity to retroviral integrase reactions. J. Virol. 71, 1025-1035.
-
(1997)
J. Virol.
, vol.71
, pp. 1025-1035
-
-
Balakrishnan, M.1
Jonsson, C.B.2
-
38
-
-
0032846188
-
Structure-based mutagenesis of the HIV-1 DNA attachment site: Effects on integration and cDNA synthesis
-
Brown, H. E., Chen, H., and Engelman, A. (1999) Structure-based mutagenesis of the HIV-1 DNA attachment site: effects on integration and cDNA synthesis, J. Virol. 73, 9011-9020.
-
(1999)
J. Virol.
, vol.73
, pp. 9011-9020
-
-
Brown, H.E.1
Chen, H.2
Engelman, A.3
-
39
-
-
0035156444
-
Substrate sequence selection by retroviral integrase
-
Zhou, H., Rainey, G. J., Wong, S.-K., and Coffin, J. M. (2001) Substrate sequence selection by retroviral integrase, J. Virol. 75, 1359-1370.
-
(2001)
J. Virol.
, vol.75
, pp. 1359-1370
-
-
Zhou, H.1
Rainey, G.J.2
Wong, S.-K.3
Coffin, J.M.4
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