The Mechanism of the Supercoiled DNA Recognition by the Eukaryotic Type I Topoisomerases: I. The Enzyme Interaction with Nonspecific Oligonucleotides

Russian Journal of Bioorganic Chemistry

Volumn 29, Issue 2, 2003, Pages 143-153

  Bugreev, D V ^a   Buneva, V N ^a   Sinitsyna, O I ^b   Nevinsky, G A ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^b INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

Author keywords

DNA topoisomerase I from mice and human placenta; Mechanism of interaction with nucleotides and single and double stranded DNAs

Indexed keywords

DNA TOPOISOMERASE; DOUBLE STRANDED DNA;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; DNA SUPERCOILING; ENZYME MECHANISM; EUKARYOTIC CELL; HUMAN; HUMAN CELL; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; NONHUMAN; PROTEIN PROTEIN INTERACTION; SEQUENCE HOMOLOGY; SPECIES COMPARISON; X RAY ANALYSIS;

ANIMALIA; EUKARYOTA; MURINAE;

EID: 0037265920     PISSN: 10681620     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1023208431839     Document Type: Article

References (39)

1. Nevinskii, G.A., Mol. Biol. (Moscow), 1995, vol. 29, pp. 16-37.
2. Bugreev, D.V. and Nevinskii, G.A., Biokhimiya (Moscow), 1999, vol. 64, pp. 291-305.
3. Nevinsky, G.A., Veniaminova, A.G., Levina, A.S., Podust, V.N., Lavrik, O.I., and Holler, E., Biochemistry, 1990, vol. 29, pp. 1200-1207.
4. Lavrik, O.I. and Nevinskii, G.A., Biokhimiya (Moscow), 1989, vol. 54, pp. 757-764.
5. Lavrik, O.I. and Nevinskii, G.A., Itogi Nauki Tekhn., Ser.: Bioorg. Khim., 1987, vol. 13, pp. 3-172.
6. Knorre, D.G., Lavrik, O.I., and Nevinsky, G.A., Biochimie, 1988, vol. 70, pp. 655-661.
7. Knorre, D.G., Godovikova, T.I., and Nevinsky, G.A., Evolutionary Biochemistry and Related Areas of Physicochemical Biology, Moscow: Bach Inst. of Biochemistry and ANCO, 1995, pp. 297-320.
8. Vinogradova, N.L., Bulychev, N.V., Maksakova, G.A., Johnson, F., and Nevinskii, G.A., Mol. Biol. (Moscow), 1998, vol. 32, pp. 498-508.
9. Ishchenko, A.A., Bulychev, N.V., Maksakova, G.A., Johnson, F., and Nevinskii, G.A., Mol. Biol. (Moscow), 1998, vol. 32, pp. 590-599.
10. Beloglazova, N.G., Petruseva, I.O., Bulychev, N.V., Maksakova, G.A., Johnson, F., and Nevinskii, G.A., Mol. Biol. (Moscow), 1997, vol. 31, pp. 1109-1116.
11. Kolocheva, T.I., Demidov, S.A., Maksakova, G.A., and Nevinskii, G.A., Mol. Biol. (Moscow), 1998, vol. 32, pp. 1005-1019.
12. Wang, J.C., Annu. Rev. Biochem., 1996, vol. 65, pp. 635-692.
13. Andoh, T., Ikeda, H., and Aguro, M., Molecular Biology of DNA Topoisomerase and Its Application to Chemotherapy, Boca Raton: CRC, 1993.
14. Wang, H.K., Morris-Natschke, S.L., and Lee, K.H., Med. Res. Rev., 1997, vol. 17, pp. 367-425.
15. Stewart, L., Ireton, G.C., and Champoux, J.J., J. Biol. Chem., 1996, vol. 271, pp. 7602-7608.
16. Alsner, J., Svejstrup, J.Q., Kjeldsen, E., Sorensen, B.S., and Westergaard, O., J. Biol. Chem., 1992, vol. 267, pp. 12 408-12 411.
17. Bharti, A.K., Olson, M.O., Kufe, D.W., and Rubin, E.H., J. Biol. Chem., 1996, vol. 271, pp. 1993-1997.
18. Stewart, L., Ireton, G.C., and Champoux, J.J., J. Mol. Biol., 1997, vol. 269, pp. 355-372.
19. Stewart, L., Redinbo, M.R., Qiu, X., Hol, W.G., and Champoux, J.J., Science, 1998, vol. 279, pp. 1534-1541.
20. Thomsen, B., Mollerup, S., Bonven, B.J., Frank, R., Blocker, H., Nielsen, O.F., and Westergaard, O., EMBO J., 1987, vol. 6, pp. 1817-1823.
21. Busk, H., Thomsen, B., Bonven, B.J., Kjeldsen, E., Nielsen, O.F., and Westergaard, O., Nature, 1987, vol. 327, pp. 638-640.
22. Stevsner, T., Mortensen, U.H., Westergaard, O., and Bonven, B.J., J. Biol. Chem., 1989, vol. 264, pp. 10 110-10 113.
23. Svejstrup, J.Q., Christiansen, K., Andersen, A.H., Lund, K., and Westergaard, O., J. Biol. Chem., 1990, vol. 265, pp. 12 529-12 535.
24. Christiansen, K. and Westergaard, O., J. Biol. Chem., 1994, vol. 269, pp. 1-9.
25. Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J.J., and Hol, W.G., Science, 1998, vol. 279, pp. 1504-1513.
26. Nevinsky, G.A., Bugreev, D.V., Buneva, V.N., Yasui, Y., Nishizava, M., and Andoh, T., FEBS Lett., 1995, vol. 368, pp. 97-100.
27. Bugreev, D.V., Vasyutina, E.L., Buneva, V.N., Yasui, Y., Nishizava, M., Andoh, T., and Nevinsky, G.A., FEBS Lett., 1997, vol. 407, pp. 18-20.
28. Bugreev, D.V., Vasutina, E.L., Kolocheva, T.I., Buneva, V.N., Andoh, T., and Nevinsky, G.A., Biochimie, 1998, vol. 80, pp. 303-308.
29. Doronin, S.V., Nevinsky, G.A., Malygina, T.O., Podust, V.N., Khomov, V.V., and Lavrik, O.I., FEBS Lett., 1989, vol. 259, pp. 83-85.
30. Krogh, S., Mortensen, U.H., Westergaard, O., and Bonven, B.J., Nucleic Acids Res., 1991, vol. 19, pp. 1235-1241.
31. Redinbo, M.R., Champoux, J.J., and Hol, W.G., Biochemistry, 2000, vol. 39, pp. 6832-6840.
32. Saenger, W., Principles of Nucleic Acid Structure, Cantor, C.R., Ed., New York: Springer, 1984. Translated under the title Printsipy strukturnoi organizatsii nukleinovykh kislot, Moscow: Mir, 1987.
33. Saenger, W., Principles of Nucleic Acid Structure, Cantor, C.R., Ed., New York: Springer, 1984. Translated under the title Printsipy strukturnoi organizatsii nukleinovykh kislot, Moscow: Mir, 1987.
34. Bugreev, D.V., Sinitsina, O.I., Buneva, V.N., and Nevinskii, G.A., Bioorg. Khim., 2003, vol. 29 (in press).
35. Ishii, K., Hasegawa, T., Fujisawa, K., and Andoh, T., J. Biol. Chem., 1983, vol. 258, pp. 12 728-12 732.
36. Bugreev, D.V., Vasyutina, E.L., Maksakova, G.A., Buneva, V.N., Ando, T., and Nevinskii, G.A., Mol. Biol. (Moscow), 1997, vol. 31, pp. 239-251.
37. Shibutani, S., Takeshita, M., and Grollman, A.P., Nature, 1991, vol. 349, pp. 431-434.
38. Bodepudi, V., Iden, C.R., and Johnson, F., Nucleotides Nucleosides, 1991, vol. 10, pp. 755-761.
39. Handbook of Biochemistry and Molecular Biology, vol. 1, 3rd ed., Fastman, G.D., Ed., Cleveland: CRG, 1975.