Kinetic conformational analysis of human 8-oxoguanine-DNA glycosylase

Journal of Biological Chemistry

Volumn 282, Issue 2, 2007, Pages 1029-1038

  Kuznetsov, Nikita A ^a,b   Koval, Vladimir V ^a,b   Nevinsky, Georgy A ^a,b   Douglas, Kenneth T ^c   Zharkov, Dmitry O ^a,b   Fedorova, Olga S ^a,b  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^b NOVOSIBIRSK STATE UNIVERSITY   (Russian Federation)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ABASIC SITE; DNA LESIONS; ENZYME RESIDUES; REACTIVE OXYGEN SPECIES;

CATALYSIS; CONFORMATIONS; FLUORESCENCE; RATE CONSTANTS; REACTION KINETICS;

DNA;

2 AMINOPURINE; 8 HYDROXYGUANINE; DNA; DNA GLYCOSYLTRANSFERASE; GUANINE DERIVATIVE; OLIGODEOXYNUCLEOTIDE DERIVATIVE; TRYPTOPHAN; 8 BROMOGUANINE; 8 HYDROXYGUANOSINE; 8-BROMOGUANINE; 8-HYDROXYGUANOSINE; CYTOSINE; DRUG DERIVATIVE; GUANINE; GUANOSINE; LIGAND; NUCLEOTIDE; OXOGUANINE GLYCOSYLASE 1, HUMAN; REACTIVE OXYGEN METABOLITE; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; COMPARATIVE STUDY; CONFORMATIONAL TRANSITION; ENZYME SPECIFICITY; FLOW KINETICS; FLUORESCENCE; HUMAN; ISOMERIZATION; KINETICS; PRIORITY JOURNAL; STIMULATION; CHEMISTRY; DNA REPAIR; DRUG EFFECT; ENZYME ACTIVATION; METABOLISM; PHYSIOLOGY; PROTEIN CONFORMATION;

2-AMINOPURINE; CATALYSIS; CYTOSINE; DNA GLYCOSYLASES; DNA REPAIR; ENZYME ACTIVATION; GUANINE; GUANOSINE; HUMANS; KINETICS; LIGANDS; NUCLEOTIDES; PROTEIN CONFORMATION; REACTIVE OXYGEN SPECIES; SUBSTRATE SPECIFICITY;

EID: 33847718732     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M605788200     Document Type: Article

References (45)

1. Halliwell, B., and Gutteridge, J. M. C. (1989) Free Radicals in Biology and Medicine, 2nd Ed., Clarendon Press, Oxford
2. Beckman, K. B., and Ames, B. N. (1998) Physiol. Rev. 78, 547-581
3. Friedberg, E. C., Walker, G. C., Siede, W., Wood, R. D., Schultz, R. A., and Ellenberger, T. (2006) DNA Repair and Mutagenesis, ASM Press, Washington, D. C.
4. Burrows, C. J., and Muller, J. G. (1998) Chem. Rev. 98, 1109-1151
5. Pogozelski, W. K., and Tullius, T. D. (1998) Chem. Rev. 98, 1089-1107
6. Auffret van der Kemp, P., Thomas, D., Barbey, R., de Oliveira, R., and Boiteux, S. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 5197-5202
7. Radicella, J. P., Dherin, C., Desmaze, C., Fox, M. S., and Boiteux, S. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 8010-8015
8. Rosenquist, T. A., Zharkov, D. O., and Grollman, A. P. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 7429-7434
9. Weiss, J. M., Goode, E. L., Ladiges, W. C., and Ulrich, C. M. (2005) Mol. Carcinog. 42, 127-141
10. Thomas, D., Scot, A. D., Barbey, R., Padula, M., and Boiteux, S. (1997) Mol. Gen. Genet. 254, 171-178
11. Arai, T., Kelly, V. P., Komoro, K., Minowa, O., Noda, T., and Nishimura, S. (2003) Cancer Res. 63, 4287-4292
12. Choi, J.-Y., Kim, H.-S., Kang, H.-K., Lee, D.-W., Choi, E.-M., and Chung, M.-H. (1999) Free Radic. Biol. Med. 27, 848-854
13. Karahalil, B., Girard, P.-M., Boiteux, S., and Dizdaroglu, M. (1998) Nucleic Acids Res. 26, 1228-1232
14. Dherin, C., Radicella, J. P., Dizdaroglu, M., and Boiteux, S. (1999) Nucleic Acids Res. 27, 4001-4007
15. Nash, H. M., Lu, R., Lane, W. S., and Verdine, G. L. (1997) Chem. Biol. 4, 693-702
16. Dodson, M. L., Michaels, M. L., and Lloyd, R. S. (1994) J. Biol. Chem. 269, 32709-32712
17. Bjørås, M., Luna, L., Johnsen, B., Hoff, E., Haug, T., Rognes, T., and Seeberg, E. (1997) EMBO J. 16, 6314-6322
18. Zharkov, D. O., Rosenquist, T. A., Gerchman, S. E., and Grollman, A. P. (2000) J. Biol. Chem. 275, 28607-28617
19. Fromme, J. C., Bruner, S. D., Yang, W., Karplus, M., and Verdine, G. L. (2003) Nat. Struct. Biol. 10, 204-211
20. Kuznetsov, N. A., Koval, V. V., Zharkov, D. O., Nevinsky, G. A., Douglas, K. T., and Fedorova, O. S. (2005) Nucleic Acids Res. 33, 3919-3931
21. Girard, P. M., D'Ham, C., Cadet, J., and Boiteux, S. (1998) Carcinogenesis 19, 1299-1305
22. Bruner, S. D., Norman, D. P. G., and Verdine, G. L. (2000) Nature 403, 859-866
23. Zharkov, D. O., and Grollman, A. P. (2005) Mutat. Res. 577, 24-54
24. Huffman, J. L., Sundheim, O., and Tainer, J. A. (2005) Mutat. Res. 577, 55-76
25. Jiang, Y. L., and Stivers, J. T. (2002) Biochemistry 41, 11236-11247
26. Wong, I., Lundquist, A. J., Bernards, A. S., and Mosbaugh, D. W. (2002) J. Biol. Chem. 277, 19424-19432
27. Wong, I., Bernards, A. S., Miller, J. K., and Wirz, J. A. (2003) J. Biol. Chem. 278, 2411-2418
28. Fedorova, O. S., Nevinsky, G. A., Koval, V. V., Ishchenko, A. A., Vasilenko, N. L., and Douglas, K. T. (2002) Biochemistry 41, 1520-1528
29. Koval, V. V., Kuznetsov, N. A., Zharkov, D. O., Ishchenko, A. A., Douglas, K. T., Nevinsky, G. A., and Fedorova, O. S. (2004) Nucleic Acids Res. 32, 926-935
30. Ward, D. C., Reich, E., and Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237
31. Rachofsky, E. L., Osman, R., and Ross, J. B. A. (2001) Biochemistry 40, 946-956
32. Stivers, J. T., Pankiewicz, K. W., and Watanabe, K. A. (1999) Biochemistry 38, 952-963
33. Long, R. A., Robins, R. K., and Townsend, L. B. (1967) J. Org. Chem. 32, 2751-2756
34. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326
35. Kuznetsov, N. A., Koval, V. V., Zharkov, D. O., Nevinsky, G. A., Douglas, K. T., and Fedorova, O. S. (2006) Biochemistry, in press
36. Kuzmic, P. (1996) Anal. Biochem. 237, 260-273
37. Norman, D. P. G., Bruner, S. D., and Verdine, G. L. (2001) J. Am. Chem. Soc. 123, 359-360
38. Girard, P.-M., Guibourt, N., and Boiteux, S. (1997) Nucleic Acids Res. 25, 3204-3211
39. Chen, L., Haushalter, K. A., Lieber, C. M., and Verdine, G. L. (2002) Chem. Biol. 9, 345-350
40. Banerjee, A., Yang, W., Karplus, M., and Verdine, G. L. (2005) Nature 434, 612-618
41. Verdine, G. L., and Norman, D. P. G. (2003) Annu. Rev. Biochem. 72, 337-366
42. Blainey, P. C., van Oijen, A. M., Banerjee, A., Verdine, G. L., and Xie, X. S. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 5752-5757
43. Chung, S. J., and Verdine, G. L. (2004) Chem. Biol. 11, 1643-1649
44. Bjørås, M., Seeberg, E., Luna, L., Pearl, L. H., and Barrett, T. E. (2002) J. Mol. Biol. 317, 171-177
45. Fromme, J. C., and Verdine, G. L. (2002) Nat. Struct. Biol. 9, 544-552