메뉴 건너뛰기




Volumn 1, Issue 1, 2000, Pages

An overview of the structures of protein-DNA complexes

Author keywords

[No Author keywords available]

Indexed keywords


EID: 33746748243     PISSN: 14656906     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (131)

References (65)
  • 4
    • 0017411710 scopus 로고    scopus 로고
    • The Protein Data Bank: A computer-based achival file for macromolecular structures
    • Koetzler TF, Williams GJB, Meyer EF, Brice MD, Rogers JR, Kennard O, Shimanouchi T, Tasumi M
    • Bernstein FC, Koetzler TF, Williams GJB, Meyer EF, Brice MD, Rogers JR, Kennard O, Shimanouchi T, Tasumi M: The Protein Data Bank: a computer-based achival file for macromolecular structures.; Mol Biol 1977, 112:535-542.
    • Mol Biol 1977, 112:535-542.
    • Bernstein, F.C.1
  • 5
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE
    • Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res 2000, 28:235-242.
    • Nucleic Acids Res 2000, 28:235-242.
    • Berman, H.M.1
  • 6
    • 0026742978 scopus 로고    scopus 로고
    • Relational database of three-dimensional structures of nuclei acids.
    • Olson WK, Beveridge DL, Westbrook J, Gelbin, Demeny T, Hsieh S-H, Srinivasan AR, Schneider B
    • Berman HM, Olson WK, Beveridge DL, Westbrook J, Gelbin, Demeny T, Hsieh S-H, Srinivasan AR, Schneider B: Relational database of three-dimensional structures of nuclei acids. ] B/opnys 1992,63:751-759.
    • B/opnys 1992,63:751-759.
    • Berman, H.M.1
  • 8
  • 9
    • 0014757386 scopus 로고    scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequences of two proteins
    • Needleman SB, Wunsch CD: A general method applicable to the search for similarities in the amino acid sequences of two proteins. J Mol Biol 1970, 48:443-453.
    • J Mol Biol 1970, 48:443-453.
    • Needleman, S.B.1    Wunsch, C.D.2
  • 10
    • 0027220647 scopus 로고    scopus 로고
    • Identification and classification of protein fold families
    • Flores TP, Taylor WR, Thornton JM
    • Orengo ÇA, Flores TP, Taylor WR, Thornton JM: Identification and classification of protein fold families, frot Eng 1993, 6:485500.
    • Frot Eng 1993, 6:485500.
    • Orengo, Ç.A.1
  • 11
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG:The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997,24:4876-4882.
    • Nucleic Acids Res 1997,24:4876-4882.
    • Thompson, J.D.1
  • 18
    • 0028118764 scopus 로고    scopus 로고
    • Hin recombinase bound to DNA: The origin of specificity in major and minor groove interactions
    • Johnson, RC, Dickerson RE
    • Feng J-A, Johnson, RC, Dickerson RE: Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions. Sdence 1994, 263:348-355.
    • Sdence 1994, 263:348-355.
    • Feng, J.-A.1
  • 19
    • 33746704856 scopus 로고    scopus 로고
    • DNA recognition and superstructure formation by HTH proteins
    • Yagi N, Gerstein MB
    • Suzuki M, Yagi N, Gerstein MB: DNA recognition and superstructure formation by HTH proteins. Prot Eng 1995, 8:329338.
    • Prot Eng 1995, 8:329338.
    • Suzuki, M.1
  • 20
    • 0028147533 scopus 로고    scopus 로고
    • The crystal structure of a mutant protein with altered but improved Hydrophobie core packing
    • Model A, Sauer RT, Richards FM
    • Lim WA, Model A, Sauer RT, Richards FM: The crystal structure of a mutant protein with altered but improved Hydrophobie core packing. Proc Nat/ Acad Sei USA 1994, 91:423-427.
    • Proc Nat/ Acad Sei USA 1994, 91:423-427.
    • Lim, W.A.1
  • 21
    • 0030967745 scopus 로고    scopus 로고
    • The X-ray structure of the PurR-guanine-PurF operator complex reveals the contributions of complementary electrostatic surfaces and a water-mediated hydrogen bond to corepressor specificity and binding affinity
    • Glasfeld A, Zalkin H Brennan RG
    • Schumacher MA, Glasfeld A, Zalkin H Brennan RG: The X-ray structure of the PurR-guanine-PurF operator complex reveals the contributions of complementary electrostatic surfaces and a water-mediated hydrogen bond to corepressor specificity and binding affinity.] Biol Chem 1997, 272:2264822653.
    • Biol Chem 1997, 272:2264822653.
    • Schumacher, M.A.1
  • 22
    • 0029065860 scopus 로고    scopus 로고
    • DNA recognition code of transcription factors
    • Brenner SE, Gerstein MB, Yagi, N
    • Suzuki M, Brenner SE, Gerstein MB, Yagi, N: DNA recognition code of transcription factors. Prot Eng 1995, 8:319-328.
    • Prot Eng 1995, 8:319-328.
    • Suzuki, M.1
  • 23
    • 0027372621 scopus 로고    scopus 로고
    • Tandem binding in crystals of a Trp represser operator half-site complex
    • Lawson CL, Carey J: Tandem binding in crystals of a Trp represser operator half-site complex. Nature 1993, 366:178182.
    • Nature 1993, 366:178182.
    • Lawson, C.L.1    Carey, J.2
  • 26
    • 0026466149 scopus 로고    scopus 로고
    • Determination of the base recognition positions of zinc finger from sequence-analysis
    • Jacobs GH: Determination of the base recognition positions of zinc finger from sequence-analysis. EMBOJ 1992, 11:4507-4517.
    • EMBOJ 1992, 11:4507-4517.
    • Jacobs, G.H.1
  • 27
    • 0025773296 scopus 로고    scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 a
    • Pavletich NP, Pabo CO: Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A. Sdence 1991, 252:809-817.
    • Sdence 1991, 252:809-817.
    • Pavletich, N.P.1    Pabo, C.O.2
  • 28
    • 0027937601 scopus 로고    scopus 로고
    • Stereochemical basis of DNA recognition by Zn fingers
    • Gerstein MB, Yagi, N
    • Suzuki M, Gerstein MB, Yagi, N: Stereochemical basis of DNA recognition by Zn fingers. Nucleic Adds Res 1994, 22:3397-3405.
    • Nucleic Adds Res 1994, 22:3397-3405.
    • Suzuki, M.1
  • 29
    • 0027749348 scopus 로고    scopus 로고
    • The crystal structure of a 2 zinc finger peptide reveals an extension to the rules of zinc finger DNA recognition
    • Schwabe JWR, Chapman L, Finch JT, Rhodes D
    • Fairall L, Schwabe JWR, Chapman L, Finch JT, Rhodes D: The crystal structure of a 2 zinc finger peptide reveals an extension to the rules of zinc finger DNA recognition. Nature 1993, 366:483-487.
    • Nature 1993, 366:483-487.
    • Fairall, L.1
  • 30
    • 0028046895 scopus 로고    scopus 로고
    • Selection of DNA-binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
    • Choo Y, Klug A: Selection of DNA-binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc Not/ Acad Sei USA 1994, 91:11168-11172.
    • Proc Not/ Acad Sei USA 1994, 91:11168-11172.
    • Choo, Y.1    Klug, A.2
  • 31
    • 0027423758 scopus 로고    scopus 로고
    • Crystal structure of a 5-finger Gli-DNA complex - New perspectives on zinc fingers
    • Pavletich NP, Pabo CO: Crystal structure of a 5-finger Gli-DNA complex - new perspectives on zinc fingers. Sdence 1993, 261:1701-1707.
    • Sdence 1993, 261:1701-1707.
    • Pavletich, N.P.1    Pabo, C.O.2
  • 32
    • 0027498883 scopus 로고    scopus 로고
    • On the mechanism of DNA-binding by nuclear hormone receptors - A structural and functional perspective
    • Freedman LP, Luisi BF: On the mechanism of DNA-binding by nuclear hormone receptors - a structural and functional perspective. J Cell Biochem 1993, 51:140-150.
    • J Cell Biochem 1993, 51:140-150.
    • Freedman, L.P.1    Luisi, B.F.2
  • 33
    • 0027365669 scopus 로고    scopus 로고
    • The crystal structure of the estrogen-receptor DNA-binding domain bound to DNA - How receptors discriminate between their response elements
    • Chapman L, Finch JT, Rhodes D
    • Schwabe JWR, Chapman L, Finch JT, Rhodes D: The crystal structure of the estrogen-receptor DNA-binding domain bound to DNA - how receptors discriminate between their response elements. Cell 1993, 75:567-578.
    • Cell 1993, 75:567-578.
    • Schwabe, J.W.R.1
  • 34
    • 0027983669 scopus 로고    scopus 로고
    • Crystal structure of a p53 tumor supressor-DNA complex: Understanding tumorgenie mutations
    • Gorina S, Jeffrey PD, Pavletich NP
    • Cho Y, Gorina S, Jeffrey PD, Pavletich NP: Crystal structure of a p53 tumor supressor-DNA complex: understanding tumorgenie mutations. Science 1994, 265:346-355.
    • Science 1994, 265:346-355.
    • Cho, Y.1
  • 35
    • 0026547747 scopus 로고    scopus 로고
    • DNA recognition by GAL4: Structure of a protein-DNA complex
    • Carey M, Ptashne M, Harrison SC
    • Marmorstein R, Carey M, Ptashne M, Harrison SC: DNA recognition by GAL4: structure of a protein-DNA complex. Nature 1992,356:408-414.
    • Nature 1992,356:408-414.
    • Marmorstein, R.1
  • 36
    • 0027049805 scopus 로고    scopus 로고
    • Brandi CJ, Struhl K, Harrison SC: The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted a helices: crystal structure of the protein-DNA complex
    • Ellenberger TE. Brandi CJ, Struhl K, Harrison SC: The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted a helices: crystal structure of the protein-DNA complex. Cell 1992, 71:1223-1237.
    • Cell 1992, 71:1223-1237.
    • Ellenberger, T.E.1
  • 37
    • 0027910469 scopus 로고    scopus 로고
    • Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain
    • Prendergast GC, Ziff EB, Burley SK
    • Ferre d'Amare AR, Prendergast GC, Ziff EB, Burley SK: Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature 1993,363:38-45.
    • Nature 1993,363:38-45.
    • Ferre D'Amare, A.R.1
  • 38
    • 0028177691 scopus 로고    scopus 로고
    • Built by association -structure and function of helix-loop-helix DNA-binding proteins
    • Phillips SEV: Built by association -structure and function of helix-loop-helix DNA-binding proteins. Structure 1994, 2:1-4.
    • Structure 1994, 2:1-4.
    • Phillips, S.E.V.1
  • 39
    • 0031749528 scopus 로고    scopus 로고
    • A new DNA-binding motif in the Skn-l binding domain-DNA complex
    • Daughdrill GW, Bowerman B, Matthews BW
    • Rupert PB, Daughdrill GW, Bowerman B, Matthews BW: A new DNA-binding motif in the Skn-l binding domain-DNA complex. Not Struct Biol 1998, 5:484-491.
    • Not Struct Biol 1998, 5:484-491.
    • Rupert, P.B.1
  • 40
  • 41
    • 0026656038 scopus 로고    scopus 로고
    • Crystal structure at 1.7A of the bovine papillomavirus-l E2 DNA-binding domain bound to its DNA target
    • Grossman SR, Laimins, Sigler PB
    • Hedge RS, Grossman SR, Laimins, Sigler PB: Crystal structure at 1.7A of the bovine papillomavirus-l E2 DNA-binding domain bound to its DNA target. Nature 1992, 359:505-512.
    • Nature 1992, 359:505-512.
    • Hedge, R.S.1
  • 42
    • 0032545097 scopus 로고    scopus 로고
    • The 2.2A structure of a permanganate sensitive DNA site bound by the Epstein-Barr virus origin-binding protein
    • Bochkareva E, Edwards AM, Frappier L
    • Bochkarev A, Bochkareva E, Edwards AM, Frappier L: The 2.2A structure of a permanganate sensitive DNA site bound by the Epstein-Barr virus origin-binding protein, Ebna I.J Mol 6/0/1998,284:1273-1278.
    • Ebna I.J Mol 6/0/1998,284:1273-1278.
    • Bochkarev, A.1
  • 43
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8A resolution
    • Mader AW, Richmod RK, Sargent DF, Richmqd TJ
    • Luger K, Mader AW, Richmod RK, Sargent DF, Richmqd TJ: Crystal structure of the nucleosome core particle at 2.8A resolution. Nature 1997,389:251-260.
    • Nature 1997,389:251-260.
    • Luger, K.1
  • 44
    • 0033485515 scopus 로고    scopus 로고
    • The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequencespecific DNA recognition
    • Sweet RM, Churchill MEA
    • Murphy FV, Sweet RM, Churchill MEA: The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequencespecific DNA recognition. EMBO] 1999, 18:6610-6618.
    • EMBO 1999, 18:6610-6618.
    • Murphy, F.V.1
  • 45
    • 0030886293 scopus 로고    scopus 로고
    • Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse
    • Gopaul DN, van Dyke GD
    • Guo F, Gopaul DN, van Dyke GD: Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. Nature 1997,389:40-46.
    • Nature 1997,389:40-46.
    • Guo, F.1
  • 46
    • 0027504913 scopus 로고    scopus 로고
    • S.Hahn S, P.B.Sigler PB: Crystal structure of YTBP/TATA-box complex
    • Kim Y, Geiger JH. S.Hahn S, P.B.Sigler PB: Crystal structure of YTBP/TATA-box complex. Nature 1993. 365:512-514.
    • Nature 1993. 365:512-514.
    • Kim, Y.1    Geiger, J.H.2
  • 48
    • 0026641755 scopus 로고    scopus 로고
    • Crystal structure of the Met repressor-operator complex at 2.8A resolution reveals DNA recognition by beta strands
    • Somers WS, Phillips SEV: Crystal structure of the Met repressor-operator complex at 2.8A resolution reveals DNA recognition by beta strands. Nature 1992, 359:387-391.
    • Nature 1992, 359:387-391.
    • Somers, W.S.1    Phillips, S.E.V.2
  • 49
    • 0028177303 scopus 로고    scopus 로고
    • DNA recognition by β-sheets in the Arc represser-operator crystal structure
    • Rould MA, Pabo CO, Sauer RT
    • Raumann BE, Rould MA, Pabo CO, Sauer RT: DNA recognition by β-sheets in the Arc represser-operator crystal structure. Nature 1994,367:754-757.
    • Nature 1994,367:754-757.
    • Raumann, B.E.1
  • 50
    • 0029908981 scopus 로고    scopus 로고
    • Structure of a replication-terminator protein complexed with DNA
    • Horiuchi T, Ohsumi K, Shimamoto N, Morikawa K
    • Kamada K, Horiuchi T, Ohsumi K, Shimamoto N, Morikawa K: Structure of a replication-terminator protein complexed with DNA. Nature 1996, 383:598-603.
    • Nature 1996, 383:598-603.
    • Kamada, K.1
  • 51
    • 0039706410 scopus 로고    scopus 로고
    • Cristallographie structure of the T domain-DNA complex of the Brachyury transcription factor
    • Muller CW, Herrmann BG: Cristallographie structure of the T domain-DNA complex of the Brachyury transcription factor. Nature 1997,389:884-888.
    • Nature 1997,389:884-888.
    • Muller, C.W.1    Herrmann, B.G.2
  • 52
    • 0030451819 scopus 로고    scopus 로고
    • Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
    • Yang S-W, Mizuchi K, Nash HA
    • Rice PA, Yang S-W, Mizuchi K, Nash HA: Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 1996, 87:1295-1307.
    • Cell 1996, 87:1295-1307.
    • Rice, P.A.1
  • 53
    • 0032510217 scopus 로고    scopus 로고
    • The hyperthermophile chromosomal protein SAC7D sharply kinks DNA
    • Gao YG, McCray BS, Edmondson SP, Shriver JW, Wang AH
    • Robinson H, Gao YG, McCray BS, Edmondson SP, Shriver JW, Wang AH: The hyperthermophile chromosomal protein SAC7D sharply kinks DNA. Noture 1998, 392:202-205.
    • Noture 1998, 392:202-205.
    • Robinson, H.1
  • 54
    • 0028979479 scopus 로고    scopus 로고
    • Structure of NF-KB p50 homodimer bound to a kappa B site
    • Van Duyne G, Ghosh S, Sigler PB
    • Ghosh G, Van Duyne G, Ghosh S, Sigler PB: Structure of NF-KB p50 homodimer bound to a kappa B site. Nature 1995, 373:303-310.
    • Nature 1995, 373:303-310.
    • Ghosh, G.1
  • 55
    • 0032577678 scopus 로고    scopus 로고
    • Kuriyan J: Crystal structure of a tyrosine phosphorylated STAT-I dimer bound to DNA
    • Vinkemeier U, Zhao Y, Jeruzalmi D, Darnel! JE Jr.
    • Chen X, Vinkemeier U, Zhao Y, Jeruzalmi D, Darnel! JE Jr., Kuriyan J: Crystal structure of a tyrosine phosphorylated STAT-I dimer bound to DNA. Cell 1998, 93:827-839.
    • Cell 1998, 93:827-839.
    • Chen, X.1
  • 58
    • 0033957801 scopus 로고    scopus 로고
    • Selley J, Wright W: PRINTS-S: the database formerly known as PRINTS
    • Croning MDR, Flower DR, Lewis AP, Mabey JE, Scordis P.
    • Attwood TK, Croning MDR, Flower DR, Lewis AP, Mabey JE, Scordis P. Selley J, Wright W: PRINTS-S: the database formerly known as PRINTS. Nude/c Adds Res 2000, 28:225-227.
    • Nude/c Adds Res 2000, 28:225-227.
    • Attwood, T.K.1
  • 59
    • 0030659457 scopus 로고    scopus 로고
    • PDBsum: A web-based database of summaries and analyses of all PDB structures
    • Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM
    • Laskowski RA, Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM: PDBsum: a web-based database of summaries and analyses of all PDB structures. Trends β/ochem Sei 1997, 22:488-490.
    • Trends β/Ochem Sei 1997, 22:488-490.
    • Laskowski, R.A.1
  • 60
    • 0030777303 scopus 로고    scopus 로고
    • CATH - A hierarchic classification of protein domain structures
    • Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM
    • Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM: CATH - a hierarchic classification of protein domain structures. Structure 1997, 5:1093-1108.
    • Structure 1997, 5:1093-1108.
    • Orengo, C.A.1
  • 61
    • 0000243829 scopus 로고    scopus 로고
    • PROCHECK: A program to check the stereochemical quality of proteins structures
    • MacArthur MW, Moss DS, Thornton JM
    • Laskowski RA, MacArthur MW, Moss DS, Thornton JM: PROCHECK: a program to check the stereochemical quality of proteins structures. JApp/Crystoltogr 1993, 26:283-291.
    • JApp/Crystoltogr 1993, 26:283-291.
    • Laskowski, R.A.1
  • 63
    • 0028961335 scopus 로고    scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Brenner SE, Hubbard T, Chechia C
    • Murzin AG, Brenner SE, Hubbard T, Chechia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995,247:536-540.
    • J Mol Biol 1995,247:536-540.
    • Murzin, A.G.1
  • 64
    • 0025398721 scopus 로고    scopus 로고
    • WHAT IF: A molecular modeling an drug design program
    • Vriend G: WHAT IF: a molecular modeling an drug design program.] Mol Graph 1990,8:52-56.
    • Mol Graph 1990,8:52-56.
    • Vriend, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.