Entropy increases from different sources support the high-affinity binding of the N-terminal inhibitory domains of tissue inhibitors of metalloproteinases to the catalytic domains of matrix metalloproteinases-1 and -3

Journal of Biological Chemistry

Volumn 286, Issue 19, 2011, Pages 16891-16899

  Wu, Ying ^a   Wei, Shuo ^a,c   Van Doren, Steven R ^b   Brew, Keith ^a  

^a FLORIDA ATLANTIC UNIVERSITY   (United States)

^b University of Missouri   (United States)

^c UNIVERSITY OF VIRGINIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYTIC DOMAINS; CONFORMATIONAL ENTROPY; ENTHALPY CHANGE; EXTRACELLULAR; HEAT CAPACITY CHANGE; INHIBITORY DOMAINS; IONIZATION EFFECT; ISOTHERMAL TITRATION CALORIMETRY; MATRIX; MATRIX METALLOPROTEINASES; METALLOPROTEINASES; N-TERMINALS; TEMPERATURE DEPENDENCE; THERMODYNAMIC PROFILES; TISSUE INHIBITOR;

TISSUE;

ENTROPY;

TISSUE INHIBITOR OF METALLOPROTEINASE 1; TISSUE INHIBITOR OF METALLOPROTEINASE 3;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CARBONYLATION; CONTROLLED STUDY; ENTHALPY; ENTROPY; GENE MUTATION; HYDROPHOBICITY; IONIZATION; ISOTHERMAL TITRATION CALORIMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PROTON TRANSPORT; STRUCTURE ANALYSIS; THERMODYNAMICS;

CALORIMETRY; CATALYTIC DOMAIN; ENTROPY; HUMANS; MATRIX METALLOPROTEINASE 1; MATRIX METALLOPROTEINASE 3; MODELS, BIOLOGICAL; MOLECULAR CONFORMATION; PROTEASE INHIBITORS; PROTEIN INTERACTION MAPPING; PROTEIN STRUCTURE, TERTIARY; TEMPERATURE; THERMODYNAMICS; TISSUE INHIBITOR OF METALLOPROTEINASE-1; TISSUE INHIBITOR OF METALLOPROTEINASE-2;

EID: 79955783114     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.222307     Document Type: Article

References (43)

1. McCawley, L. J., and Matrisian, L. M. (2001) Curr. Opin. Cell Biol. 13, 534-540
2. Murphy, G., and Nagase, H. (2008) Mol. Aspects Med. 29, 290-308
3. Brew, K., and Nagase, H. (2010) Biochim. Biophys. Acta 1803, 55-71
4. Gomis-Rüth, F. X., Maskos, K., Betz, M., Bergner, A., Huber, R., Suzuki, K., Yoshida, N., Nagase, H., Brew, K., Bourenkov, G. P., Bartunik, H., and Bode, W. (1997) Nature 389, 77-81
5. Iyer, S., Wei, S., Brew, K., and Acharya, K. R. (2007) J. Biol. Chem. 282, 364-371
6. Fernandez-Catalan, C., Bode, W., Huber, R., Turk, D., Calvete, J. J., Lichte, A., Tschesche, H., and Maskos, K. (1998) EMBO J. 17, 5238-5248
7. Maskos, K., Lang, R., Tschesche, H., and Bode, W. (2007) J. Mol. Biol. 366, 1222-1231
8. Wingfield, P. T., Sax, J. K., Stahl, S. J., Kaufman, J., Palmer, I., Chung, V., Corcoran, M. L., Kleiner, D. E., and Stetler-Stevenson, W. G. (1999) J. Biol. Chem. 274, 21362-21368
9. Wei, S., Kashiwagi, M., Kota, S., Xie, Z., Nagase, H., and Brew, K. (2005) J. Biol. Chem. 280, 32877-32882
10. Higashi, S., and Miyazaki, K. (1999) J. Biol. Chem. 274, 10497-10504
11. Van Doren, S. R., Wei, S., Gao, G., DaGue, B. B., Palmier, M. O., Bahudhanapati, H., and Brew, K. (2008) Biopolymers 89, 960-968
12. Meng, Q., Malinovskii, V., Huang, W., Hu, Y., Chung, L., Nagase, H., Bode, W., Maskos, K., and Brew, K. (1999) J. Biol. Chem. 274, 10184-10189
13. Lim, N. H., Kashiwagi, M., Visse, R., Jones, J., Enghild, J. J., Brew, K., and Nagase, H. (2010) Biochem. J. 431, 113-122
14. Williamson, R. A., Muskett, F. W., Howard, M. J., Freedman, R. B., and Carr, M. D. (1999) J. Biol. Chem. 274, 37226-37232
15. Huang, W., Meng, Q., Suzuki, K., Nagase, H., and Brew, K. (1997) J. Biol. Chem. 272, 22086-22091
16. Wei, S., Chen, Y., Chung, L., Nagase, H., and Brew, K. (2003) J. Biol. Chem. 278, 9831-9834
17. Butler, G. S., Hutton, M., Wattam, B. A., Williamson, R. A., Knäuper, V., Willenbrock, F., and Murphy, G. (1999) J. Biol. Chem. 274, 20391-20396
18. Lee, M. H., Rapti, M., and Murphy, G. (2003) J. Biol. Chem. 278, 40224-40230
19. Lee, M. H., Rapti, M., Knaüper, V., and Murphy, G. (2004) J. Biol. Chem. 279, 17562-17569
20. Hamze, A. B., Wie, S., Bahudhanapati, H., Kota, S., Acharya, K. R., and Brew, K. (2007) Protein Sci. 16, 1905-1913
21. Rapti, M., Atkinson, S. J., Lee, M. H., Trim, A., Moss, M., and Murphy, G. (2008) Biochem. J. 411, 433-439
22. Arumugam, S., Gao, G., Patton, B. L., Semenchenko, V., Brew, K., and Van Doren, S. R. (2003) J. Mol. Biol. 327, 719-734
23. Huang, W., Suzuki, K., Nagase, H., Arumugam, S., Van Doren, S. R., and Brew, K. (1996) FEBS Lett. 384, 155-161
24. Wei, S., Xie, Z., Filenova, E., and Brew, K. (2003) Biochemistry 42, 12200-12207
25. Kashiwagi, M., Tortorella, M., Nagase, H., and Brew, K. (2001) J. Biol. Chem. 276, 12501-12504
26. Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Biochemistry 31, 3947-3955
27. Baker, B. M., and Murphy, K. P. (1998) Methods Enzymol. 295, 294-315
28. Spolar, R. S., and Record, M. T., Jr. (1994) Science 263, 777-784
29. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148
30. Reynolds, C., Damerell, D., and Jones, S. (2009) Bioinformatics 25, 413-414
31. Baker, B. M., and Murphy, K. P. (1996) Biophys. J. 71, 2049-2055
32. Goldberg, R. N., Kishore, N., and Lennen, R. M. (2002) J. Phys. Chem. Ref. Data 31, 231-361
33. Janin, J. (1996) Proteins Struct. Funct. Genet. 24, i-ii
34. Baldwin, R. L. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 8069-8072
35. Yu, Y. B., Privalov, P. L., and Hodges, R. S. (2001) Biophys. J. 81, 1632-1642
36. Fu, L., and Freire, E. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 9335-9338
37. Chen, L., Rydel, T. J., Gu, F., Dunaway, C. M., Pikul, S., Dunham, K. M., and Barnett, B. L. (1999) J. Mol. Biol. 293, 545-557
38. Cooper, A. (2005) Biophys. Chem. 115, 89-97
39. Cooper, A., Cameron, D., Jakus, J., and Pettigrew, G. W. (2007) Biochem. Soc. Trans. 35, 1547-1550
40. Grimsley, G. R., Scholtz, J. M., and Pace, C. N. (2009) Protein Sci. 18, 247-251
41. Holman, C. M., Kan, C. C., Gehring, M. R., and Van Wart, H. E. (1999) Biochemistry 38, 677-681
42. Cho, S., Swaminathan, C. P., Bonsor, D. A., Kerzic, M. C., Guan, R., Yang, J., Kieke, M. C., Andersen, P. S., Kranz, D. M., Mariuzza, R. A., and Sundberg, E. J. (2010) Biochemistry 49, 9256-9268
43. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) J. Comput. Chem. 25, 1605-1612