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79952254343
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The term "pose" refers to both the ligand conformation and its orientation in a protein binding site. Thus, Figure 11 displays two separate poses for DCT.
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The term "pose" refers to both the ligand conformation and its orientation in a protein binding site. Thus, Figure 11 displays two separate poses for DCT.
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The PDB coordinates of DCT docked into β-tubulin and proposed as a candidate for the binding pose were generously provided by Professors Diaz and Jiménez-Barbero. (12)
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The PDB coordinates of DCT docked into β-tubulin and proposed as a candidate for the binding pose were generously provided by Professors Diaz and Jiménez-Barbero. (12)
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79952262534
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Global minimum (GM) energy conformers are force field-dependent, as demonstrated by the fact that the MM2* global minimum 2a is different from the GM obtained by similar dictyostatin searches using AMBER , OPLS, and MMFF force fields; see Methods.
-
Global minimum (GM) energy conformers are force field-dependent, as demonstrated by the fact that the MM2* global minimum 2a is different from the GM obtained by similar dictyostatin searches using AMBER, OPLS, and MMFF force fields; see Methods.
-
-
-
-
41
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79952268985
-
-
By "virtual structure" we mean a 3D structure that may accommodate all or a subset of the measured NMR quantities, but does not correspond to an energy minimum on either an empirical or a computational energy surface.
-
By "virtual structure" we mean a 3D structure that may accommodate all or a subset of the measured NMR quantities, but does not correspond to an energy minimum on either an empirical or a computational energy surface.
-
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42
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0037460183
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43
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79952253371
-
-
Dictyostatin conformations can be obtained in pdb format upon request.
-
Dictyostatin conformations can be obtained in pdb format upon request.
-
-
-
-
44
-
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79952267617
-
-
2O conformational search provided 2a as the global minimum and 2b as the second and only conformational family within 2.0 kca/mol of the global minimum. An attempt to fit these two conformations to the NMR data led to an SSD = 1096. Satisfactory fits of the NMR data usually provide SSD values below 100-150.
-
2O conformational search provided 2a as the global minimum and 2b as the second and only conformational family within 2.0 kca/mol of the global minimum. An attempt to fit these two conformations to the NMR data led to an SSD = 1096. Satisfactory fits of the NMR data usually provide SSD values below 100-150.
-
-
-
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45
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79952268853
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