Statistical mechanics of the immune response to vaccines

Statistical Mechanics of Cellular Systems and Processes

Volumn , Issue , 2009, Pages 177-213

  Sun, Jun ^a   Deem, Michael W ^a  

^a Rice University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 79951677761     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1017/CBO9780511576768.008     Document Type: Chapter

References (140)

1. World Health Organization Media Centre Influenza Fact Sheet 211 (2003), www.who.int/mediacentre/factsheets/fs211/en/.
2. J. R. Lave, C. J. Lin, M. J. Fine, and P. Hughes-Cromick, Sem. Respir. Crit. Care Med.20, 189 (1999).
3. K. M. Neuzil, G.W. Reed, J. E. F. Mitchel, and M. R. Griffin, J. Am. Med. Assoc.281, 901 (1999).
4. M. J. W. Sprenger, P. G. Mulder, W. E. P. Beyer, R. VanStrik, and N. Masurel, Int. J. Epidemiol.22, 334 (1993).
5. M. I. Meltzer, N. J. Cox, and K. Fukuda, Emerg. Infect. Dis.5, 659 (1999).
6. K. Stohr and M. Esveld, Science306, 2195 (2004).
7. D. J. Gubler, Clin. Microbiol. Rev.11, 480 (1998).
8. I. Kurane and T. Takasaki, Rev. Med. Virol.11, 301 (2001).
9. R. V. Gibbons and D.W. Vaughn, Bio. Med. J.324, 1563 (2002).
10. S. B. Halstead, Science239, 476 (1988).
11. D. Guha-Sapri and B. Schimmer, Emer. Themes Epidemiol. 2, 1 (2005).
12. H. Varmus, R. Klausner, E. Zerhouni, et al., Science302, 398 (2003).
13. V. Gupta, D. J. Earl, and M.W. Deem, Vaccine24, 3881 (2006).
14. Research Report–2004-03-25, Press Releases, American Autoimmune Related Diseases Association, www.aarda.org/press_releases.php.
15. P.W. Anderson, Proc. Natl Acad. Sci. USA80, 3386 (1983).
16. J. A. Shapiro, Genetica86, 99 (1992).
17. J. A. Shapiro, Trends Genet. 13, 98 (1997).
18. D. J. Earl and M.W. Deem, Proc. Natl Acad. Sci. USA101, 11531 (2004).
19. M. G. Kidwell and D. R. Lisch, Evolution55, 1 (2001).
20. C. A. Janeway, P. Travers, M. Walport, and M. Shlomchik, Immunobiology: The Immune System in Health and Disease, 6th edn. (New York, Taylor & Francis, 2004).
21. M.W. Deem and H.-Y. Lee, Phys. Rev. Lett.91, 068101 (2003).
22. J. Sun, D. J. Earl, and M.W. Deem, Phys. Rev. Lett.95, 148104 (2005).
23. H. Zhou and M. Deem, Vaccine24, 2451 (2006).
24. M. Yang, J.-M. Park, and M.W. Deem, Physica A366, 347 (2006).
25. G. M. Griffiths, C. Berek, M. Kaartinen, and C. Milstein, Nature312, 271 (1984).
26. R. Schier et al., J. Mol. Biol.263, 551 (1996).
27. L. D. Bogarad and M.W. Deem, Proc. Natl Acad. Sci. USA96, 2591 (1999).
28. K. H. Fischer and J. A. Hertz, Spin Glasses(New York, Cambridge University Press, 1991).
29. D. J. Gross and M. Mézard, Nucl. Phys. B240, 431 (1984).
30. N. Bohr, Nature137, 344 (1936).
31. T. Guhr, A. Müller-Groeling, and H. A. Weidenmüller, Phys. Rep.299, 189 (1998).
32. S. F. Edwards and P.W. Anderson, J. Phys. F5, 965 (1975).
33. D. Sherrington and S. Kirkpatrick, Phys. Rev. Lett.35, 1792 (1975).
34. B. Derrida, Phys. Rev. Lett.45, 79 (1980).
35. G. Toulouse, Commun. Phys.2, 115 (1977).
36. D. L. Stein and P.W. Anderson, Proc. Natl Acad. Sci. USA81, 1751 (1984).
37. J. D. Bryngelson and P. G. Wolynes, Proc. Natl Acad. Sci. USA84, 7524 (1987).
38. A. M. Gutin and E. I. Shakhnovich, J. Chem. Phys.98, 8174 (1993).
39. B. Derrida and L. Peliti, Bull. Math. Biol.53, 355 (1991).
40. S. Kauffman and S. Levin, J. Theor. Biol.128, 11 (1987).
41. H. Kitano, Nature Rev. 5, 826 (2004).
42. G. Weisbuch, J. Theor. Biol.143, 507 (1990).
43. B. Drossel, Adv. Phys.50, 209 (2001).
44. J. Sun, D. J. Earl, and M.W. Deem, Modern Phys. Lett. B20, 63 (2006).
45. A. S. Perelson and C. A. Macken, Proc. Natl Acad. Sci. USA92, 9657 (1995).
46. S. A. Kauffman and W. G. MacReady, J. Theor. Biol.173, 427 (1995).
47. T. Tan, L. D. Bogarad, and M.W. Deem, J. Mol. Evol.59, 385 (2004).
48. G. M. Edelman, Sci. Amer.223, 34 (1970).
49. R. R. Porter, Science180, 713 (1973).
50. D. L. French, R. Laskov, and M. D. Scharff, Science244, 1152 (1989).
51. J.-M. Park and M.W. Deem, Physica A341, 455 (2004).
52. R. M. Zinkernagel and H. Hengartner, Science293, 251 (2001).
53. A.W. Goldrath and M. J. Bevan, Nature402, 255 (1999).
54. P. A. van der Merwe and S. J. Davis, Annu. Rev. Immunol.21, 659 (2003).
55. H. L. Robinson and R. R. Amara, Nature Med. 11, S25 (2005).
56. Q. Ge, A. Bai, B. Jones, H. N. Eisen, and J. Chen, Immunology101, 3041 (2004).
57. R. M. Kedl, J.W. Kappler, and P. Marrack, Curr. Opin. Immunol.15, 120 (2003).
58. M. A. Purbhoo, D. J. Irvine, J. B. Huppa, and M. M. Davis, Nature. Immunol.5, 524 (2004).
59. C. Kesmir, J. A. M. Borghans, and R. J. de Boer, et al.Science288, 1135 (2000).
60. T. P. Arstila, A. Casrouge, V. Baron, et al., Science286, 958 (1999).
61. M. J. Miller, S. H. Wei, I. Parker, and M. D. Cahalan, Science296, 1869 (2002).
62. T. R. Mempel, S. E. Henrickson, and U. H. von Adrian, Nature427, 154 (2004).
63. A. T. Stock, S. N. Mueller, A. L. van Lint, W. R. Heath, and F. R. Carbone, J. Immunol.18, 2241 (2004).
64. J. N. Blattman, D. J. D. Sourdive, K. Murali-Krishna, R. Ahmed, and J. D. Altman, J. Immunol.165, 6081 (2000).
65. D. J. D. Sourdive, K. Murali-Krishna, J. D. Altman, et al., J. Exp. Med.188, 71 (1998).
66. A. Mathew, I. Kurane, A. L. Rothman, et al., J. Clin. Invest.98, 1684 (1996).
67. J. Zivny, I. Kurane, A. M. Leporati, et al., J. Exp. Med.182, 853 (1995).
68. D. Gray, Annu. Rev. Immunol.11, 49 (1993).
69. F. L. Black and L. Rosen, J. Immunol.88, 725 (1962).
70. J. Sprent, Curr. Opin. Immunol.5, 433 (1993).
71. S. Fazekas de St. Groth and R. G. Webster, J. Exp. Med.124, 331 (1966).
72. S. Fazekas de St. Groth and R. G. Webster, J. Exp. Med.124, 347 (1966).
73. C. Berek and C. Milstein, Immunol. Rev.96, 23 (1987).
74. D. J. Smith, S. Forrest, D. H. Ackley, and A. S. Perelson, Proc. Natl Acad. Sci. USA96, 14001 (1999).
75. G. M. Air, M. C. Els, L. E. Brown, W. G. Laver, and R. G. Webster, Virology145, 237 (1985).
76. W. M. Fitch, J. M. Leiter, X. Li, and P. Palese, Proc. Natl Acad. Sci. USA88, 4270 (1991).
77. R. M. Bush, C. A. Bender, K. Subbarao, N. J. Cox, and W. M. Fitch, Science286, 1921 (1999).
78. J. B. Plotkin and J. Dushoff, Proc. Natl Acad. Sci. USA100, 7152 (2003).
79. W. M. Fitch, R. M. Butch, C. A. Bender, K. Subbarao, and N. J. Cox, Heredity91, 183 (2000).
80. C. Macken, H. Lu, J. Goodman, and L. Boykin, in Options for the Control of Influenza IV, ed. by A. D. M. E. Osterhaus, N. Cox, and A.W. Hampson (New York, Elsevier Science, 2001), hemagglutinin H3 epitope structural mapping, www.flu.lanl.gov/.
81. J.W. Smith and R. Pollard, J. Hyg.83, 157 (1979).
82. W. A. Keitel, T. R. Cate, and R. B. Couch, Am. J. Epidemiol.127, 353 (1988).
83. W. A. Keitel, T. R. Cate, R. B. Couch, L. L. Huggins, and K. R. Hess, Vaccine15, 1114 (1997).
84. V. Demicheli, D. Rivetti, J. Deeks, and T. Jefferson, Cochrane Database Syst. Rev.3, CD001269 (2004).
85. K. M. Edwards, W. D. Dupont, M. K. Westrich, et al., J. Infect. Dis.169, 68 (1994).
86. D. S. Campbell and M. H. Rumley, J. Occup. Environ. Med.39, 408 (1997).
87. K. L. Nichol, A. Lind, K. L. Margolis, et al., New Engl. J. Med.333, 889 (1995).
88. I. Grotto, Y. Mandel, M. S. Green, et al., Clin. Infect. Dis.26, 913 (1998).
89. M. L. Clements, R. F. Betts, E. L. Tierney, and B. R. Murphy, J. Clin. Microbiol.23, 73 (1986).
90. C. B. Bridges, W.W. Thompson, M. I. Meltzer, et al., J. Am. Med. Assoc.284, 1655 (2000).
91. M. A. Mixeu, G. N. Vespa, E. Forleo-Neto, J. Toniolo-Neto, and P. M. Alves, Aviat. Space Environ. Med.73, 876 (2002).
92. J. L. Millot, M. Aymard, and A. Bardol, Occup. Med.-Oxford52, 281 (2002).
93. N. Kawai, H. Ikematsu, N. Iwaki, et al., Vaccine21, 4507 (2003).
94. R. T. Lester, A. McGeer, G. Tomlinson, and A. S. Detsky, Infect. Cont. Hosp. Epidemiol.24, 839 (2003).
95. S. Dolan, A. C. Nyquist, D. Ondrejka, et al., Centers for Disease Control and Prevention Morbidity and Mortality Weekly Report53, 8 (2004).
96. M. S. Lee and J. S. E. Chen, Emerg. Infect. Dis.10, 1385 (2004).
97. N. Cox, A. Balish, L. Brammer, et al., in Information for the Vaccines and Related Biological Products Advisory Committee, CBER, FDA, WHO Collaborating Center for Surveillance Epidemiology and Control of Influenza(Atlanta, GA, Centers for Disease Control, 2003).
98. G.W. Both, M. J. Sleigh, N. J. Cox, and A. P. Kendal, J. Virol.48, 52 (1983).
99. J. S. Ellis, P. Chakraverty, and J. P. Clewley, Arch. Virol.140, 1889 (1995).
100. M. T. Coiras, J. C. Aguilar, M. Galiano, et al., Arch. Virol. 146, 2133 (2001).
101. WHO Weekly Epidemiological Record 63, 57 (1988).
102. A. V. Pontoriero, E. G. Baumeister, A. M. Campos, et al., Pan Am. J. Publ. Health9, 246 (2001).
103. Information for FDA vaccine advisory panel meeting, 1997, Atlanta, GA, Centers for Disease Control.
104. R. A. Goldsby, T. J. Kindt, B. A. Osborne, and J. Kuby, Immunobiology, 5th edn. (New York, W. H. Freeman, 2002).
105. M. Ney-Nifle and A. P. Young, J. Phys. A30, 5311 (1997).
106. V. Azcoiti, E. Follana, and F. Ritort, J. Phys. A28, 3863 (1995).
107. P. D. Holler, L. K. Chlewicki, and D. M. Kranz, Nature Immunol. 4, 55 (2003).
108. E. T. Munoz and M.W. Deem, Vaccine23, 1142 (2004).
109. N. A. Campbell and J. B. Reece, Biology, 7th edn. (San Francisco, CA, Benjamin Cummings, 2004).
110. J. K. Percus, O. E. Percus, and A. S. Perelson, Proc. Natl Acad. Sci. USA90, 1691 (1993).
111. V. Detours, H. Bersini, J. Stewart, and F. Varela, J. Theor. Biol.170, 401 (1994).
112. J. Sulzer, L. van Hemmen, A. U. Newmann, and U. Behn, Bull. Math. Biol.55, 1133 (1993).
113. T. Tan, D. Frenkel, V. Gupta, and M.W. Deem, Physica A350, 52 (2005).
114. M. Larché and D. C. Wraith, Nature Med. 11, S69 (2005).
115. A. Crameri, S. A. Raillard, E. Bermudez, and W. P. C. Stemmer, Nature391, 288 (1998).
116. M. Ostermeier, J. H. Shim, and S. J. Benkovic, Nature Biotech. 17, 1205 (1999).
117. W. J. Netzer and F. U. Hartl, Nature388, 343 (1997).
118. D. Kaplan, I. Ferrari, P. L. Bergami, et al., Proc. Natl Acad. Sci. USA94, 10301 (1997).
119. M. Leirisalo-Repo, Curr. Opin. Rheumatol.17, 433 (2005).
120. S. M. Carty, N. Snowden, and A. J. Silman, J. Rheumatol.30, 425 (2003).
121. J. Mongkolsapaya, W. Dejnirattisai, X. Xu, et al., Nature Med. 9, 921 (2003).
122. A. L. Rothman, J. Clin. Invest.113, 946 (2004).
123. P. Klenerman and R. M. Zinkernagel, Nature394, 482 (1998).
124. N. Sangkawibha, S. Rojanasuphot, S. Ahandrik, et al., Am. J. Epidemiol.120, 653 (1984).
125. R. M. Welsh and A. L. Rothman, Nature Med. 9, 820 (2003).
126. A. L. Rothman, N. Kanesa-thasan, K. West, et al., Vaccine19, 4694 (2001).
127. T. Dharakul, I. Kurane, N. Bhamarapravati, et al., J. Infect. Dis.170, 27 (1994).
128. P. L. Nara and R. Garrity, Vaccine16, 1780 (1998).
129. J.W. Yewdell and J. R. Bennink, Annu. Rev. Immunol.17, 51 (1999).
130. A. A. Freitas and B. Rocha, Annu. Rev. Immunol.18, 83 (2000).
131. M.W. Deem, AIChE J. 51, 3086 (2005).
132. H. Schreiber, T. H. Wu, J. Nachman, and W. M. Kast, Semin. Cancer. Biol.12, 25 (2002).
133. A. Martin-Fontecha, S. Sebastiani, U. E. Hopken, et al., J. Exp. Med.198, 615 (2003).
134. H. Hon and J. Jacob, Immunologic Res. 29, 69 (2004).
135. R. G. van der Most, A. Sette, C. Oseroff, et al., J. Immunol.157, 5543 (1996).
136. G. A. Cole, T. L. Hogg, M. A. Coppola, and D. L. Woodland, J. Immunol.158, 4301 (1997).
137. A. Makki, G. Weidt, N. E. Blachere, L. Lefrancois, and P. K. Srivastava, Cancer Immunity2, 4 (2002).
138. A. C. Spaulding, I. Kurane, F. A. Ennis, and A. L. Rothman, J. Virol.73, 398 (1999).
139. D. J. Gubler, Nature Med. 10, 129 (2004).
140. R. L. Fournier, Basic Transport Phenomena in Biomedical Engineering, 2nd edn. (Philadelphia, PA, Taylor & Francis, 2007).