A hierarchical approach to protein molecular evolution

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 6, 1999, Pages 2591-2595

  Bogarad, Leonard D ^a   Deem, Michael W ^b  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; CONFERENCE PAPER; MOLECULAR EVOLUTION; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; SYSTEM ANALYSIS;

EID: 0033052969     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.6.2591     Document Type: Article

References (33)

1. Devlin, J. J., Panganiban, L. C. & Devlin, P. E. (1990) Science 249, 404-406.
2. Cwirla, S. E., Peters, E. A., Barrett, R. W. & Dower, W. J. (1990) Proc. Natl. Acad. Sci. USA 87, 6378-6382.
3. Scott, J. K. & Smith, G. P. (1990) Science 249, 386-390.
4. Hawkins, R. E., Russell, S. J. & Winter, G. (1992) J. Mol. Biol. 226, 889-896.
5. Gram, H., Marconi, L. A., Barbas, C. F., Collet, T. A., Lerner, R. A. & Kang, A. S. (1992) Proc. Natl. Acad. Sci. USA 89, 3576-3580.
6. Griffiths, A. D., Williams, S. C., Hartley, O., Tomlinson, I. M., Waterhouse, P., Crosby, W. L., Kontermann, R. E., Jones, P. T., Low, N. M., Allison, T., et al. (1994) EMBO J. 13, 3245-3260.
7. Stemmer, W. P. C. (1994) Nature (London) 370, 389-391.
8. Crameri, A., Raillard, S. A., Bermudez, E. & Stemmer, W. P. C. (1998) Nature (London) 391, 288-291.
9. Zhang, J.-H., Dawes, G. & Stemmer, W. P. C. (1997) Proc. Natl. Acad. Sci. USA 94, 4504-4509.
10. Moore, J. C., Jin, H.-M., Kuchner, O. & Arnold, F. H. (1997) J. Mol. Biol. 272, 336-347.
11. Patten, P. A., Howard, R. J. & Stemmer, W. P. C. (1997) Curr. Opin. Biotech. 8, 724-733.
12. Lawrence, J. G. (1997) Trends Microbiol. 5, 355-359.
13. Pennisi, E. (1998) Science 281, 1131-1134.
14. Gilbert, W. (1978) Nature (London) 271, 501.
15. Gilbert, W., DeSouza, S. J. & Long, M. (1997) Proc. Natl. Acad. Sci. USA 94, 7698-7703.
16. Netzer, W. J. & Hartl, F. U. (1997) Nature (London) 388, 343-349.
17. Shapiro, J. A. (1992) Genetica 86, 99-111.
18. Shapiro, J. A. (1997) Trends Genet. 13, 98-104.
19. Kauffman, S. & Levin, S. (1987) J. Theor. Biol. 128, 11-45.
20. Kauffman, S. A. (1993) The Origins of Order (Oxford Univ. Press, New York).
21. Kauffman, S. A. & MacReady, W. G. (1995) J. Theor. Biol. 173, 427-440.
22. Perelson, A. S. & Macken, C. A. (1995) Proc. Natl. Acad. Sci. USA 92, 9657-9661.
23. Kamtekar, S., Schiffer, J. M., Xiong, H. Y., Babik, J. M. & Hecht, M. H. (1993) Science 262, 1680-1685.
24. Riddle, D. S., Santiago, J. V., Brayhall, S. T., Doshi, N., Grantcharova, V. P., Yi, Q. & Baker, D. (1997) Nat. Struct. Biol. 4, 805-809.
25. Miller, S. & Orgel, L. (1974) The Origin of Life on Earth (Prentice-Hall, Englewood Cliffs, NJ).
26. Schuster, P. & Stadler, P. F. (1998) in Viral Regulatory Structures and Their Degeneracy, ed. Myers, G. (Addison-Wesley, Reading, MA), pp. 163-186.
27. Geyer, C. J. (1991) in Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface (American Statistical Association, New York), pp. 156-163.
28. Kepler, T. B. & Perelson, A. S. (1998) Proc. Natl. Acad. Sci. USA 95, 11514-11519.
29. Fisch, I., Kontermann, R. E., Finnern, R., Hartley, O., Soler-gonzalez, A. S., Griffiths, A. D. & Winter, G. (1996) Proc. Natl. Acad. Sci. USA 93, 7761-7766.
30. Mandecki, W. (1990) Protein Eng. 3, 221-226.
31. Stemmer, W. P. C., Crameri, A., Ha, K. D., Brennan, T. M. & Heyneker, H. L. (1995) Gene 164, 49-53.
32. Davidson, E. H., Peterson, K. J. & Cameron, R. A. (1995) Science 270, 1319-1325.
33. Maeshiro, T. & Kimura, M. (1998) Proc. Natl. Acad. Sci. USA 95, 5088-5093.