The cytidine deaminase family: A review

Current Topics in Peptide and Protein Research

Volumn 10, Issue , 2009, Pages 1-22

  Vincenzetti, Silvia ^a   Carpi, Francesco Martino ^a   Vita, Alberto ^a  

^a UNIVERSITY OF CAMERINO   (Italy)

Author keywords

AID; APOBEC1; APOBEC3G; Cytidine deaminase

Indexed keywords

5 AZA 2' DEOXYCYTIDINE; 5 FLUOROZEBULARINE; APOLIPOPROTEIN B; ARGININE; CYSTEINE; CYTIDINE DEAMINASE; DNA; GLUTAMIC ACID; MONOMER; RNA; UNCLASSIFIED DRUG; ZEBULARINE; ZINC;

ARABIDOPSIS; BACILLUS SUBTILIS; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME STABILITY; ENZYME STRUCTURE; ESCHERICHIA COLI; HUMAN; MOLECULAR MODEL; NONHUMAN; REVIEW; SITE DIRECTED MUTAGENESIS;

BACILLUS SUBTILIS; ESCHERICHIA COLI; MAGNOLIOPHYTA;

EID: 79551671347     PISSN: 09724524     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (96)

1. Radzicka, A., and Wolfenden, R. 1995, Science, 267, 90.
2. Frick, L., MacNeela, P., and Wolfenden, R. 1987, Biorg. Chem., 15, 100.
3. Costanzi, S., Vincenzetti, S., Cristalli, G., and Vita, A. 2006, J. Mol. Graph. Model., 25, 10.
4. Betts, L., Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. W. 1994, J. Mol. Biol., 235, 635.
5. Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. W. 1996, Biochemistry, 35, 1335.
6. Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. W. 1997, Biochemistry, 36, 4768.
7. Carlow, D. C., Smith, A. A., Yang, C. C., Short, S. A., and Wolfenden, R. 1995, Biochemistry, 34, 4220.
8. Johansson, E., Mejlhede, N., Neuhard, J., and Larsen, S. 2002, Biochemistry, 41, 2563.
9. Chung, S. J., Fromme, J. C., and Verdine, G. L. 2005, J. Med Chem., 48, 658.
10. Cambi, A., Vincenzetti, S., Neuhard, J., Costanzi, S., Natalini, P., and Vita, A. 1998, Protein Eng., 11, 59.
11. Vincenzetti, S., Cambi, A., Maury, G., Bertorelle, F., Gaubert, G., Neuhard, J., Natalini, P., Salvatori, D., De Sanctis, G., and Vita, A. 2000, Protein Eng., 13, 791.
12. Vincenzetti, S., Quadrini, B., Mariani, P., De Sanctis, G., Cammertoni, N., Polzonetti, V., Pucciarelli, S., Natalini, P., and Vita, A. 2008, Proteins, 70, 144.
13. Vincenzetti, S., De Sanctis, G., Costanzi, S., Cristalli, G., Mariani, P. L., Mei, G., Neuhard, J., Natalini, P., Polzonetti, V., and Vita, A. 2003, Protein Eng., 16, 1055.
14. Muramatsu, M., Kinoshita, K., Fagarasan, S., Yamada, S., Shinkai, Y., and Honjo, H. 2000, Cell, 102, 553.
15. Harris, R. S., Sale, J. E., Petersen-Mahrt, S. K., and Neuberger, M. S. 2002, Curr. Biol., 12, 435.
16. Heintel, D., Kroemer, E., Kienle, D., Schwarzinger, I., Gleiss, A., Schwarzmeier, J., Marculescu, R., Le, T., Mannhalter, C., Gaiger, A., Stilgenbauer, S., Döhner, H., and Fonatsch, C. 2004, Leukemia, 18, 756.
17. Conticello, S. G., Harris, R. S., and Neuberger, M. S. 2003, Curr. Biol., 13, 2009.
18. Yu, X., Yu, Y., Liu, B., Luo, K., Kong, W., Mao, P., and Yu, X. F. 2003, Science, 302, 1056.
19. Xiang, S., Short S. A., Wolfenden, R., and Carter C. W. Jr. 1995, Biochemistry, 34, 4516.
20. Smith, A. A., Carlow, D. C., Wolfenden, R., and Short, S. A. 1994, Biochemistry, 33, 6468.
21. Carlow, D. C., Short, S. A., and Wolfenden, R. 1996, Biochemistry, 35, 948.
22. Vincenzetti, S., Cambi, A., Neuhard, J., Schnorr, K., Grelloni, M., and Vita, A. 1999, Protein Expres. Purif., 15, 8.
23. Faivre-Nitschke, S. E., Grienenberger, J. M., and Gualberto, J. 1999, Europ. J. Bioch., 263, 896.
24. nd ed., Freeman, New York.
25. Martin, W., and Schnarrenberger, C. 1997, Curr. Genetics, 32, 1.
26. Grace, S. C. 1990, Life Sci., 47, 1875.
27. Maier, R. M., Zeitz, P., Kössel, H., Bonnard, G., Gualberto, J. M., and Grienenberger, J. M. 1996, Plant Mol. Biol., 32, 695.
28. Takenaka, M., Verbitskiy, D., van der Merwe, J. A., Zehrmann, A., and Brennicke, A. 2008, Mitochondrion, 8, 35.
29. Smit, G., de Koster, C. C., Schripsema, J., Spaink, H. P., van Brussel, A. A., and Kijne, J. W. 1995, Plant Mol. Biol., 29, 869-873.
30. Vincenzetti, S., Cambi, A., Neuhard, J., Garattini, E., and Vita, A. 1996, Protein Expr. Purif., 8, 247.
31. Mejlhede, N., and Neuhard, J. 2000, Biochemistry, 39, 7984.
32. Chabot, G. G., Bouchard, J., and Momparler, R. L. 1983, Biochemical Pharmacology, 32, 327.
33. Momparler, R. L., Onetto-Pothier, N., and Momparler, L. F. 1990, Leuk. Res., 14, 755.
34. Lalibertè, L., Marquez, V. E., and Momparler, R. L. 1992, Cancer Chemother. Pharmacol., 30, 7.
35. Eliopoulos, N., Cournoyer, D., and Momparler, R. L. 1998, Cancer Chemother. Pharmacol., 42, 373.
36. De Clerq, E. 2001, Curr. Med. Chem., 8, 1543.
37. Riva, C. M., Barra, Y., Cano, J. P., Tubiana, N., Leieune, C., Merlin, M., de Sousa, G., Carcassonne, Y., Kreis, W., Lovecchio, J., Rottachi, C., and Rustum, Y. M. 1990, J. Cell Pharmacol., 1, 79.
38. Chabner, B. A., Johns, D. G., Coleman, C. N., Drake, J. C., and Evans, W. H. 1974, J. Clin. Invest., 53, 922.
39. Yang, J. L., Cheng, E. H., Capizzi, R. L., Cheng, Y. C., and Kufe, T. 1985, J. Clin. Invest., 75, 141.
40. Lopez, C., Watanabe, K. A., and Fox, J. J. 1980, Antimicrob. Agents Chemother., 17, 803.
41. Plunkett, W., Huang, P., Searcy, C. E., and Gandhi, V. 1996, Semin. Oncol., 23, 3.
42. Matsuda, A., and Sasaki, T. 2004, Cancer Sci., 95, 105.
43. Bouffard, D. Y., Laliberté, J., and Momparler, R. L. 1993, Biochem. Pharmacol., 45, 1857.
44. Jones P. A. 1985, Cell, 40, 485.
45. Momparler, R. L., Cote, S., and Eliopoulos, N. 1997, Leukemia, 11, 1.
46. Wentworth, D. F., and Wolfenden, R. 1975, Biochemistry, 14, 5099.
47. Camiener, G. W. 1967, Biochem. Pharmacol., 16, 1681.
48. Kreis, W., Chan, K., Budman, D. R., Schulman, P., Allen, S., Weiselberg, L., Lichtman, S., Henderso, V., Freeman, J., Deere, M., Andreeff, M., and Vinciguerra, V. 1988, Cancer Res., 48, 1337.
49. Lemaire, M., Momparler, L. F., Raynal, N. J., Bernstein, M. L., and Momparler, R. L. 2009, Cancer Chemother. Pharmacol., 63, 411.
50. Miwa, M., Ura, M., Nishida, M., Sawada, N., Ishikawa, T., Mori, K., Shimma, N., Umeda, I., and Ishitsuka, H. 1998, Eur. J. Cancer, 34, 1274.
51. Beumer, J., Eiseman, J. L., Parise, R. A., Joseph, E., Holleran, J. L., Covey, J. M., and Egorin, M. J. 2006, Clin. Cancer Res., 12, 7483.
52. Gosselin, G., Schinazi, R. F., Sommadossi, J. P., Mathè, C., Bergogne, M. C., Aubertin, A. M., Kirn, A., and Imbach, J. L. 1994, Antimicrob. Agents Chemother., 38, 1292.
53. Van Draanen, N. A., Tisdale, M., Parry, N. R., Jansen, R., Dorsife, R. E., Tuttle, J. V., Averett, D. R., and Koszalka, G. W. 1994, Antimicrob. Agents Chemother., 38, 868.
54. Shafiee, M., Griffon, J. F., Gosselin, G., Cambi, A., Vincenzetti, S., Vita, A., Eriksson, S., Imbach, J. L., and Maury, G. 1998, Biochem. Pharmacol., 56, 1237.
55. Gaubert, G., Mathé, C., Imbach, J. L., Eriksson, S., Vincenzetti, S., Salvatori, D., Vita, A., and Maury, G. 2000, Eur. J. Med. Chem., 35, 1011.
56. Vita, A., Cacciamani, T., Natalini, P., Ruggieri, S., and Magni, G. 1989, In "Advances in Experimental Medicine and Biology" (Mikanagi, K., Nishioka, K., and Kelley, W. N. Eds.), "Purine and Pyrimidine Metabolism in Man VI," Vol. 253B, pp. 71-77, Plenum, New York/London.
57. Teng, Y. S., Anderson, J. E., and Giblett, E. R. 1975, Am. J. Hum. Genet., 27, 492.
58. Bøyum, A., Løvhaug, D., Seeberg, E., and Nordlie, E. M. 1994, Exp. Hematol., 22, 208.
59. Pérignon, J., Chaléon, J., Leverger, G., Houllier, A., Thuillier, L., and Cartier, P. H. 1985, Clin. Chim. Acta, 147, 67.
60. Cacciamani, T., Vita, A., Cristalli, G., Vincenzetti, S., Natalini, P., Ruggieri, S., Amici, A., and Magni, G. 1991, Arch. Biochem. Biophys., 290, 285.
61. Lalibertè, J., and Momparler, R. L. 1994, Cancer Res., 54, 5401.
62. Fitzgerald, S. M., Goyal, R. K., Osborne, W. R., Roy, J. D., Wilson, J. W., and Ferrell, R. E. 2006, Hum. Genet., 119, 276.
63. Yue, L., Saikawa, Y., Ota, K., Tanaka, M., Nishimura, R., Uehara, T., Maeba, H., Ito, T., Sasaki, T., and Koizumi, S. 2003, Pharmacogenetics, 13, 29.
64. Kühn, K., Bertling, W. M., and Emmrich, F. 1993, Biochem. Biophys. Res. Commun., 190, 1.
65. Watanabe, S., and Uchida, T. 1996, Biochim. Biophys. Acta, 13, 99.
66. Kirch, H. C., Schroder, J., Hoppe, H., Esche, H., Seeber, S., and Schutte, J. 1998, Exp. Hematol., 26, 421.
67. Gilbert, J. A., Salavaggione, O. E., Ji, Y., Pelleymounter, L. L., Eckloff, B. W., Wieben, E. B., Ames, M. M., and Weinshilboum, R. M. 2006, Clin. Cancer Res., 12, 1795.
68. Vincenzetti, S., Mariani, P., Cammertoni, N., Polzonetti, V., Natalini, P., Quadrini, B., Volpini, R., and Vita, A. 2004, Protein Eng., Des. Sel., 17, 871.
69. Fukunaga, A. K., Marsh, S., Murry, D. J., Hurley, T. D., and McLeod, H. L. 2004, Pharmacogenomics J., 4, 307.
70. Yonemori, K., Ueno, H., Okusaka, T., Yamamoto, N., Ikeda, M., Saijo, N., Yoshida, T., Ishii, H., Furuse, J., Sugiyama, E., Kim, S. R., Kikura-Hanajiri, R., Hasegawa, R., Saito, Y., Ozawa, S., Kaniwa, N., and Sawada, J. 2005, Clin. Cancer Res., 11, 2620.
71. Conticello, S. G., Thomas, C. J., Petersen-Mahrt, S. K., and Neuberger, M. S. 2005, Mol. Biol. Evol., 22, 367.
72. Scott, J., Navaratnam, N., Bhattacharya, S., and Morrison, J. R. 1994, Curr. Opin. Lipidol., 5, 87.
73. Jarmuz, A., Chester, A., Bayliss, J., Gisbourne, J., Dunham, I., Scott, J., and Navaratnam, N. 2002, Genomics, 79, 285.
74. Honjo, T., Muramatsu, M., and Fagarasan, S. 2004, Immunity, 20, 659.
75. Liao, W., Hong, S. H., Chan, B. H., Rudolph, F. B., Clark, S. C., and Chan, L. 1999, Biochem. Biophys. Res. Commun., 260, 398.
76. Rogozin, I. B., Basu, M. K., Jordan, I. K., Pavlov, Y. I., and Koonin, E. V. 2005, Cell Cycle., 4, 1281.
77. Chester, A., Weinreb, V., Carter, C. W. Jr., and Navaratnam, N. 2004, RNA, 10, 1399.
78. Conticello, S. G. 2008, Genome Biol., 9, 229.
79. Harris, R. S., Petersen-Mahrt, S. K., and Neuberger, M. S. 2002, Mol. Cell., 10, 1247.
80. Petersen-Mahrt, S. K., and Neuberger, M. S. 2003, J. Biol. Chem., 278, 19583.
81. Shivarov, V., Shinkura, R., and Honjo, T. 2008, Proc. Natl. Acad. Sci. USA, 14, 15866.
82. Yamanaka, S., Balestra, M. E., Ferrell, L. D., Fan, J., Arnold, K. S., Taylor, S., Taylor, J. M., and Innerarity, T. L. 1995, Proc. Natl. Acad. Sci. USA, 92, 8483.
83. Sheehy, A. M., Gaddis, N. C., Choi, J. D., and Malim, M. H. 2002, Nature, 418, 646.
84. Fisher, A. G., Ensoli, B., Ivanoff, L., Chamberlain, M., Petteway, S., Ratner, L., Gallo, R. C., and Wong-Staal, F. 1987, Science, 237, 888.
85. Strebel, K., Daugherty, D., Clouse, K., Cohen, D., Folks, T., and Martin, M. A. 1987, Nature, 328, 728.
86. Newman, E. N., Holmes, R. K., Craig, H. M., Klein, K. C., Lingappa, J. R., Malim, M. H., and Sheehy, A. M. 2005, Curr. Biol., 26, 166.
87. Navaratnam, N., and Sarwar, R. 2006, Int. J. Hematol., 83, 195.
88. Arakawa, H., Hauschild, J., and Buerstedde, J. M. 2002, Science, 295, 1301.
89. Notarangelo, L. D., Duse, M., and Ugazio, A. G. 1992, Immunodefic. Rev., 3, 101.
90. Pham, P., Bransteitter, R., Petruska, J., and Goodman, M. F. 2003, Nature, 424, 103.
91. Lau, P. P., Zhu, H. J., Baldini, A., Charnsangavej, C., and Chan, L. 1994, Proc. Natl. Acad. Sci. USA, 91, 8522.
92. Ta, V. T., Nagaoka, H., Catalan, N., Durandy, A., Fischer, A., Imai, K., Nonoyama, S., Tashiro, J., Ikegawa, M., Ito, S., Kinoshita, K., Muramatsu, M., and Honjo, T. 2003, Nat. Immunol., 2003, 4, 843.
93. Ito, S., Nagaoka, H., Shinkura, R., Begum, N., Muramatsu, M., Nakata, M., and Honjo., T. 2004, Proc. Natl. Acad. Sci. USA, 101, 1975.
94. Shivarov, V., Stoimenov, A., Galabova, I., Balatzengo, G., and Guenova, M. 2009, Int. J. Lab. Hematol., 31, 106.
95. McCarthy, H., Wierda, W. G., Barron, L. L., Cromwell, C. C., Wang, J., Coombes, K. R., Rangel, R., Elenitoba-Johnson, K. S., Keating, M. J., and Abruzzo, L. V. 2003, Blood, 101, 4903.
96. Oppezzo, P., Vuillier, F., Vasconcelos, Y., Dumas, G., Magnac, C., Payelle-Brogard, B., Pritsch, O., and Dighiero, G. 2003, Blood, 101, 4029.