메뉴 건너뛰기




Volumn 13, Issue 1, 2011, Pages 38-48

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

Author keywords

E. coli; Flux balance analysis; Formate hydrogen lyase; Incomplete TCA cycle; Maintenance ATP utilization; Metabolic flux analysis

Indexed keywords

E. COLI; FLUX BALANCE ANALYSIS; FORMATE HYDROGEN LYASE; METABOLIC FLUX ANALYSIS; TCA CYCLE;

EID: 78650574197     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2010.11.004     Document Type: Article
Times cited : (117)

References (78)
  • 1
    • 64249147274 scopus 로고    scopus 로고
    • The role of light in soybean seed filling metabolism
    • Allen D.K., Ohlrogge J.B., Shachar-Hill Y. The role of light in soybean seed filling metabolism. Plant J. 2009, 58:220-234.
    • (2009) Plant J. , vol.58 , pp. 220-234
    • Allen, D.K.1    Ohlrogge, J.B.2    Shachar-Hill, Y.3
  • 2
    • 34547680140 scopus 로고    scopus 로고
    • Compartment-specific labeling information in 13C metabolic flux analysis of plants
    • Allen D.K., Shachar-Hill Y., Ohlrogge J.B. Compartment-specific labeling information in 13C metabolic flux analysis of plants. Phytochemistry 2007, 68:2197-2210.
    • (2007) Phytochemistry , vol.68 , pp. 2197-2210
    • Allen, D.K.1    Shachar-Hill, Y.2    Ohlrogge, J.B.3
  • 3
    • 77954259801 scopus 로고    scopus 로고
    • Quantifying levels and labeling of plant cell wall precursors using ion chromatography tandem mass spectrometry
    • Alonso, A.P., Piasecki, R., Yan, W., LaClair, R., Shachar-Hill, Y., 2010. Quantifying levels and labeling of plant cell wall precursors using ion chromatography tandem mass spectrometry. Plant Physiology. Under Review.
    • (2010) Plant Physiology. Under Review
    • Alonso, A.P.1    Piasecki, R.2    Yan, W.3    LaClair, R.4    Shachar-Hill, Y.5
  • 4
    • 33845679072 scopus 로고    scopus 로고
    • Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions
    • Antoniewicz M.R., Kelleher J.K., Stephanopoulos G. Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metab. Eng. 2007, 9:68-86.
    • (2007) Metab. Eng. , vol.9 , pp. 68-86
    • Antoniewicz, M.R.1    Kelleher, J.K.2    Stephanopoulos, G.3
  • 5
    • 34249297627 scopus 로고    scopus 로고
    • Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
    • Antoniewicz M.R., Kraynie D.F., Laffend L.A., Gonzalez-Lergier J., Kelleher J.K., Stephanopoulos G. Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol. Metab. Eng. 2007, 9:277-292.
    • (2007) Metab. Eng. , vol.9 , pp. 277-292
    • Antoniewicz, M.R.1    Kraynie, D.F.2    Laffend, L.A.3    Gonzalez-Lergier, J.4    Kelleher, J.K.5    Stephanopoulos, G.6
  • 6
    • 34347258175 scopus 로고    scopus 로고
    • Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
    • Becker S.A., Feist A.M., Mo M.L., Hannum G., Palsson B.O., Herrgard M.J. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat. Protocols 2007, 2:727-738.
    • (2007) Nat. Protocols , vol.2 , pp. 727-738
    • Becker, S.A.1    Feist, A.M.2    Mo, M.L.3    Hannum, G.4    Palsson, B.O.5    Herrgard, M.J.6
  • 7
    • 76749097100 scopus 로고    scopus 로고
    • Metabolic flux analysis and pharmaceutical production
    • Boghigian B.A., Seth G., Kiss R., Pfeifer B.A. Metabolic flux analysis and pharmaceutical production. Metab. Eng. 2010, 12:81-95.
    • (2010) Metab. Eng. , vol.12 , pp. 81-95
    • Boghigian, B.A.1    Seth, G.2    Kiss, R.3    Pfeifer, B.A.4
  • 9
    • 77953027084 scopus 로고    scopus 로고
    • Identification of flux control in metabolic networks using non-equilibrium thermodynamics
    • Bordel S., Nielsen J. Identification of flux control in metabolic networks using non-equilibrium thermodynamics. Metab. Eng. 2010, 12:369-377.
    • (2010) Metab. Eng. , vol.12 , pp. 369-377
    • Bordel, S.1    Nielsen, J.2
  • 10
    • 0029039185 scopus 로고
    • Quantification of compartmented metabolic fluxes in maize root tips using isotope distribution from 13C- or 14C-labeled glucose
    • Dieuaide-Noubhani M., Raffard G., Canioni P., Pradet A., Raymond P. Quantification of compartmented metabolic fluxes in maize root tips using isotope distribution from 13C- or 14C-labeled glucose. J. Biol. Chem. 1995, 270:13147-13159.
    • (1995) J. Biol. Chem. , vol.270 , pp. 13147-13159
    • Dieuaide-Noubhani, M.1    Raffard, G.2    Canioni, P.3    Pradet, A.4    Raymond, P.5
  • 11
    • 0034519221 scopus 로고    scopus 로고
    • Robustness analysis of the Escherichia coli metabolic network
    • Edwards J.S., Palsson B.O. Robustness analysis of the Escherichia coli metabolic network. Biotechnol. Prog. 2000, 16:927-939.
    • (2000) Biotechnol. Prog. , vol.16 , pp. 927-939
    • Edwards, J.S.1    Palsson, B.O.2
  • 15
    • 0344443759 scopus 로고    scopus 로고
    • A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
    • Fischer E., Sauer U. A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. J. Biol. Chem. 2003, 278:46446-46451.
    • (2003) J. Biol. Chem. , vol.278 , pp. 46446-46451
    • Fischer, E.1    Sauer, U.2
  • 16
    • 1642538406 scopus 로고    scopus 로고
    • High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints
    • Fischer E., Zamboni N., Sauer U. High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints. Anal. Biochem. 2004, 325:308-316.
    • (2004) Anal. Biochem. , vol.325 , pp. 308-316
    • Fischer, E.1    Zamboni, N.2    Sauer, U.3
  • 18
    • 33644666535 scopus 로고    scopus 로고
    • Light enables a very high efficiency of carbon storage in developing embryos of rapeseed
    • Goffman F.D., Alonso A.P., Schwender J., Shachar-Hill Y., Ohlrogge J.B. Light enables a very high efficiency of carbon storage in developing embryos of rapeseed. Plant Physiol. 2005, 138:2269-2279.
    • (2005) Plant Physiol. , vol.138 , pp. 2269-2279
    • Goffman, F.D.1    Alonso, A.P.2    Schwender, J.3    Shachar-Hill, Y.4    Ohlrogge, J.B.5
  • 19
    • 0026323815 scopus 로고
    • A new thermodynamically based correlation of chemotrophic biomass yields
    • Heijnen J.J. A new thermodynamically based correlation of chemotrophic biomass yields. Antonie Van Leeuwenhoek. 1991, 60:235-256.
    • (1991) Antonie Van Leeuwenhoek. , vol.60 , pp. 235-256
    • Heijnen, J.J.1
  • 20
    • 78650540527 scopus 로고    scopus 로고
    • Thermodynamic description of microbial growth and product formation
    • CRC Press, Boca Raton, FL, C.D. Smolke (Ed.)
    • Heijnen J.J. Thermodynamic description of microbial growth and product formation. The Metabolic Pathway Engineering Handbook: Fundamentals 2009, CRC Press, Boca Raton, FL. C.D. Smolke (Ed.).
    • (2009) The Metabolic Pathway Engineering Handbook: Fundamentals
    • Heijnen, J.J.1
  • 22
    • 33845269743 scopus 로고    scopus 로고
    • Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains
    • Hua Q., Joyce A.R., Fong S.S., Palsson B.O. Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. Biotechnol. Bioeng. 2006, 95:992-1002.
    • (2006) Biotechnol. Bioeng. , vol.95 , pp. 992-1002
    • Hua, Q.1    Joyce, A.R.2    Fong, S.S.3    Palsson, B.O.4
  • 23
    • 0345529074 scopus 로고    scopus 로고
    • Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts
    • Hua Q., Yang C., Baba T., Mori H., Shimizu K. Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts. J. Bacteriol. 2003, 185:7053-7067.
    • (2003) J. Bacteriol. , vol.185 , pp. 7053-7067
    • Hua, Q.1    Yang, C.2    Baba, T.3    Mori, H.4    Shimizu, K.5
  • 24
    • 0037079023 scopus 로고    scopus 로고
    • Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
    • Ibarra R.U., Edwards J.S., Palsson B.O. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 2002, 420:186-189.
    • (2002) Nature , vol.420 , pp. 186-189
    • Ibarra, R.U.1    Edwards, J.S.2    Palsson, B.O.3
  • 26
    • 0037470940 scopus 로고    scopus 로고
    • Analysis of metabolic and physiological responses to gnd knockout in Escherichia coli by using C-13 tracer experiment and enzyme activity measurement
    • Jiao Z., Baba T., Mori H., Shimizu K. Analysis of metabolic and physiological responses to gnd knockout in Escherichia coli by using C-13 tracer experiment and enzyme activity measurement. FEMS Microbiol. Lett. 2003, 220:295-301.
    • (2003) FEMS Microbiol. Lett. , vol.220 , pp. 295-301
    • Jiao, Z.1    Baba, T.2    Mori, H.3    Shimizu, K.4
  • 27
    • 50249113230 scopus 로고    scopus 로고
    • Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production
    • Khannapho C., Zhao H., Bonde B.K., Kierzek A.M., Avignone-Rossa C.A., Bushell M.E. Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production. Metab. Eng. 2008, 10:227-233.
    • (2008) Metab. Eng. , vol.10 , pp. 227-233
    • Khannapho, C.1    Zhao, H.2    Bonde, B.K.3    Kierzek, A.M.4    Avignone-Rossa, C.A.5    Bushell, M.E.6
  • 28
    • 38349151554 scopus 로고    scopus 로고
    • Metabolic flux analysis and metabolic engineering of microorganisms
    • Kim H.U., Kim T.Y., Lee S.Y. Metabolic flux analysis and metabolic engineering of microorganisms. Mol. Biosyst. 2008, 4:113-120.
    • (2008) Mol. Biosyst. , vol.4 , pp. 113-120
    • Kim, H.U.1    Kim, T.Y.2    Lee, S.Y.3
  • 29
    • 68349152801 scopus 로고    scopus 로고
    • Hydrogen production and metabolic flux analysis of metabolically engineered Escherichia coli strains
    • Kim S., Seol E., Oh Y.-K., Wang G.Y., Park S. Hydrogen production and metabolic flux analysis of metabolically engineered Escherichia coli strains. Int. J. Hydrogen Energy 2009, 34:7417-7427.
    • (2009) Int. J. Hydrogen Energy , vol.34 , pp. 7417-7427
    • Kim, S.1    Seol, E.2    Oh, Y.-K.3    Wang, G.Y.4    Park, S.5
  • 30
    • 20444420179 scopus 로고    scopus 로고
    • Strain improvement by metabolic engineering: lysine production as a case study for systems biology
    • Koffas M., Stephanopoulos G. Strain improvement by metabolic engineering: lysine production as a case study for systems biology. Curr. Opinion Biotechnol. 2005, 16:361-366.
    • (2005) Curr. Opinion Biotechnol. , vol.16 , pp. 361-366
    • Koffas, M.1    Stephanopoulos, G.2
  • 31
    • 0032787428 scopus 로고    scopus 로고
    • Metabolic flux analysis: a powerful tool for monitoring tissue function
    • Lee K., Berthiaume F., Stephanopoulos G.N., Yarmush M.L. Metabolic flux analysis: a powerful tool for monitoring tissue function. Tissue Eng. 1999, 5:347-368.
    • (1999) Tissue Eng. , vol.5 , pp. 347-368
    • Lee, K.1    Berthiaume, F.2    Stephanopoulos, G.N.3    Yarmush, M.L.4
  • 32
    • 0033156545 scopus 로고    scopus 로고
    • Toward predicting metabolic fluxes in metabolically engineered strains
    • Liao J.C., Oh M.K. Toward predicting metabolic fluxes in metabolically engineered strains. Metab. Eng. 1999, 1:214-223.
    • (1999) Metab. Eng. , vol.1 , pp. 214-223
    • Liao, J.C.1    Oh, M.K.2
  • 33
    • 31344479544 scopus 로고    scopus 로고
    • Ethanol fermentation from biomass resources: current state and prospects
    • Lin Y., Tanaka S. Ethanol fermentation from biomass resources: current state and prospects. Appl. Microbiol. Biotechnol. 2006, 69:627-642.
    • (2006) Appl. Microbiol. Biotechnol. , vol.69 , pp. 627-642
    • Lin, Y.1    Tanaka, S.2
  • 34
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    • Mahadevan R., Schilling C.H. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab. Eng. 2003, 5:264-276.
    • (2003) Metab. Eng. , vol.5 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.H.2
  • 35
    • 75949123498 scopus 로고    scopus 로고
    • Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling
    • Masakapalli S.K., Le Lay P., Huddleston J.E., Pollock N.L., Kruger N.J., Ratcliffe R.G. Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling. Plant Physiol. 2010, 152:602-619.
    • (2010) Plant Physiol. , vol.152 , pp. 602-619
    • Masakapalli, S.K.1    Le Lay, P.2    Huddleston, J.E.3    Pollock, N.L.4    Kruger, N.J.5    Ratcliffe, R.G.6
  • 36
    • 76749149000 scopus 로고    scopus 로고
    • Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation
    • Meadows A.L., Karnik R., Lam H., Forestell S., Snedecor B. Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation. Metab. Eng. 2010, 12:150-160.
    • (2010) Metab. Eng. , vol.12 , pp. 150-160
    • Meadows, A.L.1    Karnik, R.2    Lam, H.3    Forestell, S.4    Snedecor, B.5
  • 37
    • 34447502083 scopus 로고    scopus 로고
    • Determination of metabolic flux ratios from 13C-experiments and gas chromatography-mass spectrometry data: protocol and principles
    • Nanchen A., Fuhrer T., Sauer U. Determination of metabolic flux ratios from 13C-experiments and gas chromatography-mass spectrometry data: protocol and principles. Methods Mol. Biol. 2007, 358:177-197.
    • (2007) Methods Mol. Biol. , vol.358 , pp. 177-197
    • Nanchen, A.1    Fuhrer, T.2    Sauer, U.3
  • 40
    • 34548623183 scopus 로고    scopus 로고
    • Response of the central metabolism of Escherichia coli to modified expression of the gene encoding the glucose-6-phosphate dehydrogenase
    • Nicolas C., Kiefer P., Letisse F., Kromer J., Massou S., Soucaille P., Wittmann C., Lindley N.D., Portais J.C. Response of the central metabolism of Escherichia coli to modified expression of the gene encoding the glucose-6-phosphate dehydrogenase. FEBS Lett. 2007, 581:3771-3776.
    • (2007) FEBS Lett. , vol.581 , pp. 3771-3776
    • Nicolas, C.1    Kiefer, P.2    Letisse, F.3    Kromer, J.4    Massou, S.5    Soucaille, P.6    Wittmann, C.7    Lindley, N.D.8    Portais, J.C.9
  • 41
    • 2942624207 scopus 로고    scopus 로고
    • Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast
    • Papp B., Pal C., Hurst L.D. Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature 2004, 429:661-664.
    • (2004) Nature , vol.429 , pp. 661-664
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 42
    • 34249934691 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for the production of l-valine based on transcriptome analysis and in silico gene knockout simulation
    • Park J.H., Lee K.H., Kim T.Y., Lee S.Y. Metabolic engineering of Escherichia coli for the production of l-valine based on transcriptome analysis and in silico gene knockout simulation. In: Proc. Natl. Acad. Sci. USA 2007, 104:7797-7802.
    • (2007) In: Proc. Natl. Acad. Sci. USA , vol.104 , pp. 7797-7802
    • Park, J.H.1    Lee, K.H.2    Kim, T.Y.3    Lee, S.Y.4
  • 43
    • 2442707990 scopus 로고    scopus 로고
    • Metabolic flux analysis for a ppc mutant Escherichia coli based on 13C-labelling experiments together with enzyme activity assays and intracellular metabolite measurements
    • Peng L., Arauzo-Bravo M.J., Shimizu K. Metabolic flux analysis for a ppc mutant Escherichia coli based on 13C-labelling experiments together with enzyme activity assays and intracellular metabolite measurements. FEMS Microbiol. Lett. 2004, 235:17-23.
    • (2004) FEMS Microbiol. Lett. , vol.235 , pp. 17-23
    • Peng, L.1    Arauzo-Bravo, M.J.2    Shimizu, K.3
  • 44
    • 0032552815 scopus 로고    scopus 로고
    • Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model
    • Pramanik J., Keasling J.D. Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model. Biotechnol. Bioeng. 1998, 60:230-238.
    • (1998) Biotechnol. Bioeng. , vol.60 , pp. 230-238
    • Pramanik, J.1    Keasling, J.D.2
  • 45
    • 9544253891 scopus 로고    scopus 로고
    • Genome-scale models of microbial cells: evaluating the consequences of constraints
    • Price N.D., Reed J.L., Palsson B.O. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2004, 2:886-897.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 886-897
    • Price, N.D.1    Reed, J.L.2    Palsson, B.O.3
  • 46
    • 33644853940 scopus 로고    scopus 로고
    • Measuring multiple fluxes through plant metabolic networks
    • Ratcliffe R.G., Shachar-Hill Y. Measuring multiple fluxes through plant metabolic networks. Plant J. 2006, 45:490-511.
    • (2006) Plant J. , vol.45 , pp. 490-511
    • Ratcliffe, R.G.1    Shachar-Hill, Y.2
  • 47
    • 4644220226 scopus 로고    scopus 로고
    • Genome-scale in silico models of E-coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states
    • Reed J.L., Palsson B.O. Genome-scale in silico models of E-coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. Genome Res. 2004, 14:1797-1805.
    • (2004) Genome Res. , vol.14 , pp. 1797-1805
    • Reed, J.L.1    Palsson, B.O.2
  • 48
    • 0344328817 scopus 로고    scopus 로고
    • An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
    • Reed J.L., Vo T.D., Schilling C.H., Palsson B.O. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 2003, 4:R54.
    • (2003) Genome Biol. , vol.4
    • Reed, J.L.1    Vo, T.D.2    Schilling, C.H.3    Palsson, B.O.4
  • 49
    • 0037113867 scopus 로고    scopus 로고
    • The metabolic architecture of plant cells. Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells
    • Rontein D., Dieuaide-Noubhani M., Dufourc E.J., Raymond P., Rolin D. The metabolic architecture of plant cells. Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells. J. Biol. Chem. 2002, 277:43948-43960.
    • (2002) J. Biol. Chem. , vol.277 , pp. 43948-43960
    • Rontein, D.1    Dieuaide-Noubhani, M.2    Dufourc, E.J.3    Raymond, P.4    Rolin, D.5
  • 51
    • 33846061120 scopus 로고    scopus 로고
    • Metabolic networks in motion: 13C-based flux analysis
    • Sauer U. Metabolic networks in motion: 13C-based flux analysis. Mol. Syst. Biol. 2006, 2:62.
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 62
    • Sauer, U.1
  • 52
    • 0032753923 scopus 로고    scopus 로고
    • Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
    • Sauer U., Lasko D.R., Fiaux J., Hochuli M., Glaser R., Szyperski T., Wuthrich K., Bailey J.E. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 1999, 181:6679-6688.
    • (1999) J. Bacteriol. , vol.181 , pp. 6679-6688
    • Sauer, U.1    Lasko, D.R.2    Fiaux, J.3    Hochuli, M.4    Glaser, R.5    Szyperski, T.6    Wuthrich, K.7    Bailey, J.E.8
  • 53
    • 0343471424 scopus 로고    scopus 로고
    • Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices
    • Schmidt K., Carlsen M., Nielsen J., Villadsen J. Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices. Biotechnol. Bioeng. 1997, 55:831-840.
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 831-840
    • Schmidt, K.1    Carlsen, M.2    Nielsen, J.3    Villadsen, J.4
  • 54
    • 0032838693 scopus 로고    scopus 로고
    • Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models
    • Schmidt K., Nielsen J., Villadsen J. Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models. J. Biotechnol. 1999, 71:175-189.
    • (1999) J. Biotechnol. , vol.71 , pp. 175-189
    • Schmidt, K.1    Nielsen, J.2    Villadsen, J.3
  • 55
    • 34447523907 scopus 로고    scopus 로고
    • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
    • Schuetz R., Kuepfer L., Sauer U. Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol. Syst. Biol. 2007, 3:119.
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 119
    • Schuetz, R.1    Kuepfer, L.2    Sauer, U.3
  • 56
    • 0042531959 scopus 로고    scopus 로고
    • A flux model of glycolysis and the oxidative pentosephosphate pathway in developing Brassica napus embryos
    • Schwender J., Ohlrogge J.B., Shachar-Hill Y. A flux model of glycolysis and the oxidative pentosephosphate pathway in developing Brassica napus embryos. J. Biol. Chem. 2003, 278:29442-29453.
    • (2003) J. Biol. Chem. , vol.278 , pp. 29442-29453
    • Schwender, J.1    Ohlrogge, J.B.2    Shachar-Hill, Y.3
  • 57
    • 0037069467 scopus 로고    scopus 로고
    • Analysis of optimality in natural and perturbed metabolic networks
    • Segre D., Vitkup D., Church G.M. Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 2002, 99:15112-15117.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15112-15117
    • Segre, D.1    Vitkup, D.2    Church, G.M.3
  • 58
    • 19644386033 scopus 로고    scopus 로고
    • Regulatory on/off minimization of metabolic flux changes after genetic perturbations
    • Shlomi T., Berkman O., Ruppin E. Regulatory on/off minimization of metabolic flux changes after genetic perturbations. Proc. Natl. Acad. Sci. USA 2005, 102:7695-7700.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 7695-7700
    • Shlomi, T.1    Berkman, O.2    Ruppin, E.3
  • 59
    • 0032600888 scopus 로고    scopus 로고
    • Metabolic fluxes and metabolic engineering
    • Stephanopoulos G. Metabolic fluxes and metabolic engineering. Metab. Eng. 1999, 1:1-11.
    • (1999) Metab. Eng. , vol.1 , pp. 1-11
    • Stephanopoulos, G.1
  • 61
    • 0017381108 scopus 로고
    • A continuous culture study of an ATPase-negative mutant of Escherichia coli
    • Stouthamer A.H., Bettenhaussen C.W. A continuous culture study of an ATPase-negative mutant of Escherichia coli. Arch. Microbiol. 1977, 113:185-189.
    • (1977) Arch. Microbiol. , vol.113 , pp. 185-189
    • Stouthamer, A.H.1    Bettenhaussen, C.W.2
  • 62
    • 76749140314 scopus 로고    scopus 로고
    • Improved computational performance of MFA using elementary metabolite units and flux coupling
    • Suthers P.F., Chang Y.J., Maranas C.D. Improved computational performance of MFA using elementary metabolite units and flux coupling. Metab. Eng. 2010, 12:123-128.
    • (2010) Metab. Eng. , vol.12 , pp. 123-128
    • Suthers, P.F.1    Chang, Y.J.2    Maranas, C.D.3
  • 63
    • 0029146299 scopus 로고
    • Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • Szyperski T. Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 1995, 232:433-448.
    • (1995) Eur. J. Biochem. , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 65
    • 0027716622 scopus 로고
    • Metabolic capabilities of Escherichia-Coli .1. Synthesis of biosynthetic precursors and cofactors
    • Varma A., Palsson B.O. Metabolic capabilities of Escherichia-Coli .1. Synthesis of biosynthetic precursors and cofactors. J. Theor. Biol. 1993, 165:477-502.
    • (1993) J. Theor. Biol. , vol.165 , pp. 477-502
    • Varma, A.1    Palsson, B.O.2
  • 66
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia-Coli W3110
    • Varma A., Palsson B.O. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia-Coli W3110. Appl. Environ. Microbiol. 1994, 60:3724-3731.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 67
    • 33646578756 scopus 로고    scopus 로고
    • Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio
    • Vemuri G.N., Altman E., Sangurdekar D.P., Khodursky A.B., Eiteman M.A. Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio. Appl. Environ. Microbiol. 2006, 72:3653-3661.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3653-3661
    • Vemuri, G.N.1    Altman, E.2    Sangurdekar, D.P.3    Khodursky, A.B.4    Eiteman, M.A.5
  • 68
    • 0034741983 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • Wiechert W. 13C metabolic flux analysis. Metab. Eng. 2001, 3:195-206.
    • (2001) Metab. Eng. , vol.3 , pp. 195-206
    • Wiechert, W.1
  • 69
    • 0037075690 scopus 로고    scopus 로고
    • Modeling and simulation: tools for metabolic engineering
    • Wiechert W. Modeling and simulation: tools for metabolic engineering. J. Biotechnol. 2002, 94:37-63.
    • (2002) J. Biotechnol. , vol.94 , pp. 37-63
    • Wiechert, W.1
  • 70
    • 0031554635 scopus 로고    scopus 로고
    • Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments
    • Wiechert W., de Graaf A.A. Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments. Biotechnol. Bioeng. 1997, 55:101-117.
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 101-117
    • Wiechert, W.1    de Graaf, A.A.2
  • 73
    • 0031554628 scopus 로고    scopus 로고
    • Bidirectional reaction steps in metabolic networks: II. Flux estimation and statistical analysis
    • Wiechert W., Siefke C., de Graaf A.A., Marx A. Bidirectional reaction steps in metabolic networks: II. Flux estimation and statistical analysis. Biotechnol. Bioeng. 1997, 55:118-135.
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 118-135
    • Wiechert, W.1    Siefke, C.2    de Graaf, A.A.3    Marx, A.4
  • 74
    • 0036365460 scopus 로고    scopus 로고
    • Metabolic flux analysis using mass spectrometry
    • Wittmann C. Metabolic flux analysis using mass spectrometry. Adv. Biochem. Eng. Biotechnol. 2002, 74:39-64.
    • (2002) Adv. Biochem. Eng. Biotechnol. , vol.74 , pp. 39-64
    • Wittmann, C.1
  • 75
    • 32044471535 scopus 로고    scopus 로고
    • Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains
    • Yoshida A., Nishimura T., Kawaguchi H., Inui M., Yukawa H. Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains. Appl. Environ. Microbiol. 2005, 71:6762-6768.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 6762-6768
    • Yoshida, A.1    Nishimura, T.2    Kawaguchi, H.3    Inui, M.4    Yukawa, H.5
  • 77
    • 25444489844 scopus 로고    scopus 로고
    • FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments
    • Zamboni N., Fischer E., Sauer U. FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments. BMC Bioinformatics 2005, 6:209.
    • (2005) BMC Bioinformatics , vol.6 , pp. 209
    • Zamboni, N.1    Fischer, E.2    Sauer, U.3
  • 78
    • 0037422210 scopus 로고    scopus 로고
    • Metabolic flux analysis of Escherichia coli K12 grown on 13C-labeled acetate and glucose using GC-MS and powerful flux calculation method
    • Zhao J., Shimizu K. Metabolic flux analysis of Escherichia coli K12 grown on 13C-labeled acetate and glucose using GC-MS and powerful flux calculation method. J. Biotechnol. 2003, 101:101-117.
    • (2003) J. Biotechnol. , vol.101 , pp. 101-117
    • Zhao, J.1    Shimizu, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.