메뉴 건너뛰기




Volumn 185, Issue 24, 2003, Pages 7053-7067

Responses of the Central Metabolism in Escherichia coli to Phosphoglucose Isomerase and Glucose-6-Phosphate Dehydrogenase Knockouts

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; GLUCOSE; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; GLUCOSE 6 PHOSPHATE ISOMERASE; TRICARBOXYLIC ACID;

EID: 0345529074     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.24.7053-7067.2003     Document Type: Article
Times cited : (164)

References (52)
  • 1
    • 0032945184 scopus 로고    scopus 로고
    • The udhA gene of Escherichia coli encodes a soluble pyridine nucleotide transhydrogenase
    • Boonstra, B., C. E. French, I. Wainwright, and N. C. Bruce. 1999. The udhA gene of Escherichia coli encodes a soluble pyridine nucleotide transhydrogenase. J. Bacteriol. 181:030-1034.
    • (1999) J. Bacteriol. , vol.181 , pp. 030-1034
    • Boonstra, B.1    French, C.E.2    Wainwright, I.3    Bruce, N.C.4
  • 2
    • 0035856579 scopus 로고    scopus 로고
    • Metabolic flux response to phosphoglucose isomerase knock-out Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA
    • Canonaco, F., T. A. Hess, S. Heri, T. Wang, T. Szyperski, and U. Sauer. 2001. Metabolic flux response to phosphoglucose isomerase knock-out Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA. FEMS Microbiol. Lett. 204:247-252.
    • (2001) FEMS Microbiol. Lett. , vol.204 , pp. 247-252
    • Canonaco, F.1    Hess, T.A.2    Heri, S.3    Wang, T.4    Szyperski, T.5    Sauer, U.6
  • 5
    • 0002961439 scopus 로고    scopus 로고
    • Tricarboxylic acid cycle and glyoxylate bypass
    • F. C. Neidhardt, R. Curtiss, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Cronan, J. E., Jr., and D. LaPorte. 1996. Tricarboxylic acid cycle and glyoxylate bypass, p. 206-216. In F. C. Neidhardt, R. Curtiss, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 206-216
    • Cronan Jr., J.E.1    LaPorte, D.2
  • 6
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 7
    • 0034847930 scopus 로고    scopus 로고
    • Metabolic flux analysis with a comprehensive isotopomer model in Bacillus subtilis
    • Dauner, M., J. E. Bailey, and U. Sauer. 2001. Metabolic flux analysis with a comprehensive isotopomer model in Bacillus subtilis. Biotechnol. Bioeng. 76:144-156.
    • (2001) Biotechnol. Bioeng. , vol.76 , pp. 144-156
    • Dauner, M.1    Bailey, J.E.2    Sauer, U.3
  • 8
    • 0034844144 scopus 로고    scopus 로고
    • Stoichiometric growth model for riboflavin-producing Bacillus subtilis
    • Dauner, M., and U. Sauer. 2001. Stoichiometric growth model for riboflavin-producing Bacillus subtilis. Biotechnol. Bioeng. 76:132-143.
    • (2001) Biotechnol. Bioeng. , vol.76 , pp. 132-143
    • Dauner, M.1    Sauer, U.2
  • 10
    • 0035209302 scopus 로고    scopus 로고
    • Bacillus subtilis metabolism and energetics in carbon-limited and excess-carbon chemostat culture
    • Dauner, M., T. Storni, and U. Sauer. 2001. Bacillus subtilis metabolism and energetics in carbon-limited and excess-carbon chemostat culture. J. Bacteriol. 183:7308-7317.
    • (2001) J. Bacteriol. , vol.183 , pp. 7308-7317
    • Dauner, M.1    Storni, T.2    Sauer, U.3
  • 11
    • 0001422064 scopus 로고
    • Glucose-6-phosphate dehydrogenase
    • J. Bergmeyer and M. Grassl (ed.). VCH, Weinheim, Germany
    • Deutsch, J. 1983. Glucose-6-phosphate dehydrogenase, p. 190-197. In J. Bergmeyer and M. Grassl (ed.), Methods of enzymatic analysis. 3rd ed., vol. 3. VCH, Weinheim, Germany.
    • (1983) Methods of Enzymatic Analysis. 3rd Ed. , vol.3 , pp. 190-197
    • Deutsch, J.1
  • 13
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG1655 in silico metabolic phenotype: Its definition, characteristics, and capabilities
    • Edwards, J. S., and B. O. Palsson. 2000. The Escherichia coli MG1655 in silico metabolic phenotype: its definition, characteristics, and capabilities. Proc. Natl. Acad. Sci. USA 97:5528-5533.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.O.2
  • 16
    • 0037335931 scopus 로고    scopus 로고
    • Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS
    • Fischer, E., and U. Sauer. 2003. Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur. J. Biochem. 270:880-891.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 880-891
    • Fischer, E.1    Sauer, U.2
  • 18
    • 0001281745 scopus 로고    scopus 로고
    • Glycolysis
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Fraenkel, D. G. 1996. Glycolysis, p. 189-198. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology 2nd Ed. , pp. 189-198
    • Fraenkel, D.G.1
  • 19
    • 0014082204 scopus 로고
    • Glucose and gluconate metabolism in an Escherichia coli mutant lacking phosphoglucose isomerase
    • Fraenkel, D. G., and S. R. Levisohn. 1967. Glucose and gluconate metabolism in an Escherichia coli mutant lacking phosphoglucose isomerase. J. Bacteriol. 93:1571-1578.
    • (1967) J. Bacteriol. , vol.93 , pp. 1571-1578
    • Fraenkel, D.G.1    Levisohn, S.R.2
  • 20
    • 0002431381 scopus 로고
    • Isocitrate dehydrogenase
    • J. Bergmeyer and M. Grassl (ed.). VCH, Weinheim, Germany
    • Goldberg, D. M., and G. Ellis. 1983. Isocitrate dehydrogenase, p. 183-190. In J. Bergmeyer and M. Grassl (ed.), Methods of enzymatic analysis, 3rd ed., vol. 3. VCH, Weinheim, Germany.
    • (1983) Methods of Enzymatic Analysis, 3rd Ed. , vol.3 , pp. 183-190
    • Goldberg, D.M.1    Ellis, G.2
  • 21
    • 0035140099 scopus 로고    scopus 로고
    • Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression
    • Gombert, A. K., M. M. dos Santos, B. Christensen, and J. Nielsen. 2001. Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression. J. Bacteriol. 183:1441-1451.
    • (2001) J. Bacteriol. , vol.183 , pp. 1441-1451
    • Gombert, A.K.1    Dos Santos, M.M.2    Christensen, B.3    Nielsen, J.4
  • 22
    • 0029018721 scopus 로고    scopus 로고
    • Metabolic sources of hydrogen peroxide in aerobically growing Escherichia coli
    • González-Flecha, B., and B. Demple. Metabolic sources of hydrogen peroxide in aerobically growing Escherichia coli. J. Biol. Chem. 270:13681-13687.
    • J. Biol. Chem. , vol.270 , pp. 13681-13687
    • González-Flecha, B.1    Demple, B.2
  • 23
    • 77957227509 scopus 로고
    • Chemical analysis of microbial cells
    • J. R. Norris and D. W. Ribbons (ed.). Academic Press, London, UK
    • Herbert, D., P. J. Phipps, and R. E. Strange. 1971. Chemical analysis of microbial cells, p. 210-344. In J. R. Norris and D. W. Ribbons (ed.), Methods in microbiology. Academic Press, London, UK.
    • (1971) Methods in Microbiology , pp. 210-344
    • Herbert, D.1    Phipps, P.J.2    Strange, R.E.3
  • 25
    • 0022985811 scopus 로고
    • The central metabolic pathways of Escherichia coli: Relationship between flux and control at a branch point, efficiency of conversion to biomass, and excretion of acetate
    • Holm, W. H. 1986. The central metabolic pathways of Escherichia coli: relationship between flux and control at a branch point, efficiency of conversion to biomass, and excretion of acetate. Curr. Top. Cell. Regul. 28:69-105.
    • (1986) Curr. Top. Cell. Regul. , vol.28 , pp. 69-105
    • Holm, W.H.1
  • 26
    • 0035121691 scopus 로고    scopus 로고
    • Effects of glucose, vitamins, and DO concentrations on pyruvate fermentation using Torulopsis glabrata IFO 0005 with metabolic flux analysis
    • Hua, Q., M. Araki, Y. Koide, and K. Shimizu. 2001. Effects of glucose, vitamins, and DO concentrations on pyruvate fermentation using Torulopsis glabrata IFO 0005 with metabolic flux analysis. Biotechnol. Prog. 17:62-68.
    • (2001) Biotechnol. Prog. , vol.17 , pp. 62-68
    • Hua, Q.1    Araki, M.2    Koide, Y.3    Shimizu, K.4
  • 27
    • 0029829625 scopus 로고    scopus 로고
    • Mutants that show increased sensitivity to hydrogen peroxide reveal an important role for the pentose phosphate pathway in protection of yeast against oxidative stress
    • Juhnke, H., B. Krems, P. Kotter, and K. D. Entian. 1996. Mutants that show increased sensitivity to hydrogen peroxide reveal an important role for the pentose phosphate pathway in protection of yeast against oxidative stress. Mol. Gen. Genet. 252:456-464.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 456-464
    • Juhnke, H.1    Krems, B.2    Kotter, P.3    Entian, K.D.4
  • 28
    • 0027250347 scopus 로고
    • Growth and metabolism of Saccharomyces cerevisiae in chemostat cultures under carbon-, nitrogen-, or carbon- and nitrogen-limiting conditions
    • Larsson, C., U. von Stockar, I. Marrison, and L. Gustafsson. 1993. Growth and metabolism of Saccharomyces cerevisiae in chemostat cultures under carbon-, nitrogen-, or carbon- and nitrogen-limiting conditions. J. Bacteriol. 175:4809-4816.
    • (1993) J. Bacteriol. , vol.175 , pp. 4809-4816
    • Larsson, C.1    Von Stockar, U.2    Marrison, I.3    Gustafsson, L.4
  • 31
    • 0040194740 scopus 로고
    • Isocitrate lyase
    • McFadden, B. A. 1969. Isocitrate lyase. Methods Enzymol. 13:163-170.
    • (1969) Methods Enzymol. , vol.13 , pp. 163-170
    • McFadden, B.A.1
  • 32
    • 0015235072 scopus 로고
    • Physiological functions of NAD- and NADP-linked malic enzymes in Escherichia coli
    • Murai, T., M. Tokushige, J. Nagai, and H. Katsuki. 1971. Physiological functions of NAD- and NADP-linked malic enzymes in Escherichia coli. Biochem. Biophys. Res. Commun. 43:875-881.
    • (1971) Biochem. Biophys. Res. Commun. , vol.43 , pp. 875-881
    • Murai, T.1    Tokushige, M.2    Nagai, J.3    Katsuki, H.4
  • 33
    • 0001311831 scopus 로고    scopus 로고
    • Growth yield and energy distribution
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Neijssel, O. M., M. J. Teixeira de Mattos, and D. W. Tempest. 1996. Growth yield and energy distribution, p. 1683-1692. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 1683-1692
    • Neijssel, O.M.1    Teixeira De Mattos, M.J.2    Tempest, D.W.3
  • 35
    • 0034680782 scopus 로고    scopus 로고
    • In vivo quantification of parallel and bidirectional fluxes in the anaplerosis of Corynebacterium glutamicum
    • Petersen, S., A. A. de Graaf, L. Eggeling, M. Mollney, W. Wiechert, and H. Sahm. 2000. In vivo quantification of parallel and bidirectional fluxes in the anaplerosis of Corynebacterium glutamicum. J. Biol. Chem. 275:35932-35941.
    • (2000) J. Biol. Chem. , vol.275 , pp. 35932-35941
    • Petersen, S.1    De Graaf, A.A.2    Eggeling, L.3    Mollney, M.4    Wiechert, W.5    Sahm, H.6
  • 36
    • 0343035686 scopus 로고    scopus 로고
    • Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
    • Pramanik, J., and J. D. Keasling. 1997. Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 56:398-421.
    • (1997) Biotechnol. Bioeng. , vol.56 , pp. 398-421
    • Pramanik, J.1    Keasling, J.D.2
  • 38
    • 0032753923 scopus 로고    scopus 로고
    • Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
    • Sauer, U., D. R. Lasko, J. Fiaux, M. Hochuli, R. Glaser, T. Szyperski, K. Wüthrich, and J. E. Bailey. 1999. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 181:6679-6688.
    • (1999) J. Bacteriol. , vol.181 , pp. 6679-6688
    • Sauer, U.1    Lasko, D.R.2    Fiaux, J.3    Hochuli, M.4    Glaser, R.5    Szyperski, T.6    Wüthrich, K.7    Bailey, J.E.8
  • 39
    • 0343471424 scopus 로고    scopus 로고
    • Modeling isotopomer distributions biochemical networks using isotopomer mapping matrices
    • Schmidt, K., M. Carlsen, J. Nielsen, and J. Villadsen. 1997. Modeling isotopomer distributions biochemical networks using isotopomer mapping matrices. Biotechnol. Bioeng. 55:831-840.
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 831-840
    • Schmidt, K.1    Carlsen, M.2    Nielsen, J.3    Villadsen, J.4
  • 41
    • 0032600888 scopus 로고    scopus 로고
    • Metabolic fluxes and metabolic engineering
    • Stephanopoulos, G. 1999. Metabolic fluxes and metabolic engineering. Metab. Eng. 1:1-11.
    • (1999) Metab. Eng. , vol.1 , pp. 1-11
    • Stephanopoulos, G.1
  • 42
    • 0029146299 scopus 로고
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 232:433-448.
    • (1995) Eur. J. Biochem. , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 43
    • 0031594984 scopus 로고    scopus 로고
    • 13C-NMR, MS and metabolic flux balancing in biotechnological research
    • 13C-NMR, MS and metabolic flux balancing in biotechnological research. Q. Rev. Biophys. 31:41-106.
    • (1998) Q. Rev. Biophys. , vol.31 , pp. 41-106
    • Szyperski, T.1
  • 45
    • 0028108519 scopus 로고
    • Metabolic flux balancing: Basic concepts, scientific, and practical use
    • Varma, A., and B. O. Palsson. 1994. Metabolic flux balancing: basic concepts, scientific, and practical use. Bio/Technology 12:994-998.
    • (1994) Bio/Technology , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 46
    • 0021095336 scopus 로고
    • Why are two different types of pyridine nucleotide transhydrogenase found in living organisms?
    • Voordouw, G., S. M. van der Vies, and A. P. N. Themmen. 1983. Why are two different types of pyridine nucleotide transhydrogenase found in living organisms? Eur. J. Biochem. 131:527-533.
    • (1983) Eur. J. Biochem. , vol.131 , pp. 527-533
    • Voordouw, G.1    Van Der Vies, S.M.2    Themmen, A.P.N.3
  • 47
    • 0034115397 scopus 로고    scopus 로고
    • Quantitative determination of metabolic fluxes during coutilization of two carbon sources: Comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose
    • Wendisch, V. F., A. A. de Graaf, H. Sahm, and B. J. Eikmanns. 2000. Quantitative determination of metabolic fluxes during coutilization of two carbon sources: comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose. J. Bacteriol. 182:3088-3096.
    • (2000) J. Bacteriol. , vol.182 , pp. 3088-3096
    • Wendisch, V.F.1    De Graaf, A.A.2    Sahm, H.3    Eikmanns, B.J.4
  • 48
    • 0034741983 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • 13C metabolic flux analysis. Metab. Eng. 3:195-206.
    • (2001) Metab. Eng. , vol.3 , pp. 195-206
    • Wiechert, W.1
  • 49
    • 77957001185 scopus 로고
    • Assays of intermediates of the citric acid cycle and related compounds of fluorometric enzyme methods
    • Williamson, J. R., and B. E. Corkey. 1969. Assays of intermediates of the citric acid cycle and related compounds of fluorometric enzyme methods. Methods Enzymol. 13:434-513.
    • (1969) Methods Enzymol. , vol.13 , pp. 434-513
    • Williamson, J.R.1    Corkey, B.E.2
  • 50
    • 0141504947 scopus 로고    scopus 로고
    • Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout
    • Yang, C., Q. Hua, T. Baba, H. Mori, and K. Shimizu. 2003. Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout. Biotechnol. Bioeng. 84:129-144.
    • (2003) Biotechnol. Bioeng. , vol.84 , pp. 129-144
    • Yang, C.1    Hua, Q.2    Baba, T.3    Mori, H.4    Shimizu, K.5
  • 51
    • 0033823409 scopus 로고    scopus 로고
    • Energetics and carbon metabolism during growth of microalgal cells under photoautotrophic, mixotrophic and cyclic light-autotrophic/dark-heterotrophic conditions
    • Yang, C., Q. Hua, and K. Shimizu. 2000. Energetics and carbon metabolism during growth of microalgal cells under photoautotrophic, mixotrophic and cyclic light-autotrophic/dark-heterotrophic conditions. Biochem. Eng. J. 6:87-102.
    • (2000) Biochem. Eng. J. , vol.6 , pp. 87-102
    • Yang, C.1    Hua, Q.2    Shimizu, K.3
  • 52
    • 0036189810 scopus 로고    scopus 로고
    • Quantitative analysis of intracellular metabolic fluxes using GC-MS and two-dimensional NMR spectroscopy
    • Yang, C., Q. Hua, and K. Shimizu. 2002. Quantitative analysis of intracellular metabolic fluxes using GC-MS and two-dimensional NMR spectroscopy. J. Biosci. Bioeng. 93:78-87.
    • (2002) J. Biosci. Bioeng. , vol.93 , pp. 78-87
    • Yang, C.1    Hua, Q.2    Shimizu, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.