A comparison of mass spectrometry based hydrogen deuterium exchange methods for probing the cyclophilin A cyclosporin complex

Journal of Chromatography A

Volumn 1217, Issue 43, 2010, Pages 6709-6717

  Esswein, Stefan T ^a   Florance, Hannah V ^a,b   Baillie, Laura ^a   Lippens, Jessica ^a   Barran, P E ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF EXETER   (United Kingdom)

Author keywords

Cyclophilin A; Cyclosporin; Gas phase HDX; HDX; PLIMSTEX; SUPREX

Indexed keywords

CYCLOPHILIN A; CYCLOSPORIN; GASPHASE; HDX; PLIMSTEX; SUPREX;

COMPLEXATION; DEUTERIUM; ELECTROSPRAY IONIZATION; HYDROGEN; LIGANDS; MASS SPECTROMETRY;

GASES;

APOPROTEIN; CYCLOPHILIN A; CYCLOSPORIN A; HYDROGEN; IMMUNOPHILIN; LIGAND;

ANALYTICAL ERROR; ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; DEUTERIUM HYDROGEN EXCHANGE; INTERMETHOD COMPARISON; LIGAND BINDING; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN FOLDING; QUANTITATIVE ANALYSIS;

AMINO ACID SEQUENCE; APOPROTEINS; CHROMATOGRAPHY, LIQUID; CYCLOPHILIN A; CYCLOSPORINE; DEUTERIUM EXCHANGE MEASUREMENT; HUMANS; METHANOL; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN INTERACTION MAPPING; RECOMBINANT PROTEINS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; THERMODYNAMICS;

EID: 77957278878     PISSN: 00219673     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chroma.2010.05.028     Document Type: Article

References (43)

1. Zhu M.M., Chitta R., Gross M.L. Int. J. Mass Spectrom. 2005, 240:213.
2. Powell K.D., Fitzgerald M.C. Biochemistry 2003, 42:4962.
3. Katta V., Chait B.T. Rapid Commun. Mass Spectrom. 1991, 5:214.
4. Abzalimov R.R., Frimpong A.K., Kaltashov I.A. Int. J. Mass Spectrom. 2006, 253:207.
5. Kaltashov I.A., Zhang M.X., Eyles S.J., Abzalimov R.R. Anal. Bioanal. Chem. 2006, 386:472.
6. Suckau D., Shi Y., Beu S.C., Senko M.W., Quinn J.P., Wampler F.M., McLafferty F.W. Proc. Natl. Acad. Sci. U.S.A. 1993, 90:790.
7. Pan J., Han J., Borchers C.H., Konermann L. J. Am. Chem. Soc. 2009, 131:12801.
8. Zhu M.M., Rempel D.L., Du Z., Gross M.L. J. Am. Chem. Soc. 2003, 125:5252.
9. Ghaemmaghami S., Fitzgerald M.C., Oas T.G. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:8296.
10. Smith D.L., Deng Y.Z., Zhang Z.Q. J. Mass Spectrom. 1997, 32:135.
11. Zhai H., Han X., Breuker K., McLafferty F.W. Anal. Chem. 2005, 77:5777.
12. Anand G.S., Hughes C.A., Jones J.M., Taylor S.S., Komives E.A. J. Mol. Biol. 2002, 323:377.
13. Dobo A., Kaltashov I.A. Anal. Chem. 2001, 73:4763.
14. Eyles S.J., Dresch T., Gierasch L.M., Kaltashov I.A. J. Mass Spectrom. 1999, 34:1289.
15. Loo J.A., Loo R.R., Udseth H.R., Edmonds C.G., Smith R.D. Rapid Commun. Mass Spectrom. 1991, 5:101.
16. Freitas M.A., Hendrickson C.L., Emmett M.R., Marshall A.G. Int. J. Mass Spectrom. 1999, 185:565.
17. Myung S., Badman E.R., Lee Y.J., Clemmer D.E. J. Phys. Chem. A 2002, 106:9976.
18. Campbell S., Rodgers M.T., Marzluff E.M., Beauchamp J.L. J. Am. Chem. Soc. 1995, 117:12840.
19. Zhu M.M., Rempel D.L., Gross M.L. J. Am. Soc. Mass Spectrom. 2004, 15:388.
20. Powell K.D., Wales T.E., Fitzgerald M.C. Protein Sci. 2002, 11:841.
21. Dobson C.M. Trends Biochem. Sci. 1999, 24:329.
22. John A.S. Biopolymers 1975, 14:999.
23. Gothel S.F., Marahiel M.A. Cell. Mol. Life Sci. 1999, 55:423.
24. Vitikainen M., Lappalainen I., Seppala R., Antelmann H., Boer H., Taira S., Savilahti H., Hecker M., Vihinen M., Sarvas M., Kontinen V.P. J. Biol. Chem. 2004, 279:19302.
25. Fischer G., Wittmannliebold B., Lang K., Kiefhaber T., Schmid F.X. Nature 1989, 337:476.
26. Ivery M.T.G. Bioorg. Med. Chem. 1999, 7:1389.
27. Ke H.M., Zydowsky L.D., Liu J., Walsh C.T. Proc. Natl. Acad. Sci. U.S.A. 1991, 88:9483.
28. Mikol V., Taylor P., Kallen J., Walkinshaw M.D. J. Mol. Biol. 1998, 283:451.
29. Pflugl G., Kallen J., Schirmer T., Jansonius J.N., Zurini M.G.M., Walkinshaw M.D. Nature 1993, 361:91.
30. Theriault Y., Logan T.M., Meadows R., Yu L.P., Olejniczak E.T., Holzman T.F., Simmer R.L., Fesik S.W. Nature 1993, 361:88.
31. Schreiber S.L. Science 1991, 251:283.
32. Wang M.Z., Shetty J.T., Howard B.A., Campa M.J., Patz E.F., Fitzgerald M.C. Anal. Chem. 2004, 76:4343.
33. Dai S.Y., Gardner M.W., Fitzgerald M.C. Anal. Chem. 2005, 77:693.
34. Powell K.D., Ghaemmaghami S., Wang M.Z., Ma L., Oas T.G., Fitzgerald M.C. J. Am. Chem. Soc. 2002, 124:10256.
35. Yan-Hong S., Dong-Hai L., Jian-Ying H., Xu S. Chin. J. Chem. 2006, 24:973.
36. Yang Y., Moir E., Kontopidis G., Taylor P., Wear M.A., Malone K., Dunsmore C.J., Page A.P., Turner N.J., Walkinshaw M.D. Biochem. Biophys. Res. Commun. 2007, 363:1013.
37. Yawen B., John S.M., Leland M., Englander S.W. Proteins: Struct. Funct. Genet. 1993, 17:75.
38. West G.M., Tang L., Fitzgerald M.C. Anal. Chem. 2008, 80:4175.
39. Koeniger S.L., Merenbloom S.I., Clemmer D.E. J. Phys. Chem. B 2006, 110:7017.
40. Badman E.R., Myung S., Clemmer D.E. J. Am. Soc. Mass Spectrom. 2005, 16:1493.
41. Breuker K., McLafferty F.W. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:18145.
42. Xiao H., Hoerner J.K., Eyles S.J., Dobo A., Voigtman E., Mel'cuk A.I., Kaltashov I.A. Protein Sci. 2005, 14:543.
43. Kipping M., Schierhorn A. J. Mass Spectrom. 2003, 38:271.