메뉴 건너뛰기




Volumn 29, Issue 1-2, 2010, Pages 107-126

A new look at state-space models for neural data

Author keywords

Hidden Markov model; Neural coding; State space models; Tridiagonal matrix

Indexed keywords

COMPUTATIONAL EFFICIENCY; DECODING; MATRIX ALGEBRA; MONTE CARLO METHODS; STATE SPACE METHODS; TRELLIS CODES;

EID: 77956895434     PISSN: 09295313     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10827-009-0179-x     Document Type: Review
Times cited : (171)

References (120)
  • 4
    • 13244272097 scopus 로고    scopus 로고
    • Block matrices with L-block-banded inverse: Inversion algorithms
    • DOI 10.1109/TSP.2004.840709
    • A Asif J Moura 2005 Block matrices with l-block banded inverse: Inversion algorithms IEEE Transactions on Signal Processing 53 630 642 10.1109/TSP.2004.840709 (Pubitemid 40181757)
    • (2005) IEEE Transactions on Signal Processing , vol.53 , Issue.I2 , pp. 630-642
    • Asif, A.1    Moura, J.M.F.2
  • 5
    • 0001266656 scopus 로고
    • The iterated Kalman smoother as a Gauss-Newton method
    • 10.1137/0804035
    • BM Bell 1994 The iterated Kalman smoother as a Gauss-Newton method SIAM Journal on Optimization 4 626 636 10.1137/0804035
    • (1994) SIAM Journal on Optimization , vol.4 , pp. 626-636
    • Bell, B.M.1
  • 6
    • 0030454264 scopus 로고    scopus 로고
    • Voltage-clamp measurement of visually-evoked conductances with whole-cell patch recordings in primary visual cortex
    • DOI 10.1016/S0928-4257(97)81421-0
    • L Borg-Graham C Monier Y Fregnac 1996 Voltage-clamp measurements of visually-evoked conductances with whole-cell patch recordings in primary visual cortex Journal of Physiology (Paris) 90 185 188 1:STN:280:DyaK2s7ntlOjsQ%3D%3D 10.1016/S0928-4257(97)81421-0 (Pubitemid 27043061)
    • (1996) Journal of Physiology Paris , vol.90 , Issue.3-4 , pp. 185-188
    • Borg-Graham, L.1    Monier, C.2    Fregnac, Y.3
  • 8
    • 1542615171 scopus 로고    scopus 로고
    • Recursive Bayesian Decoding of Motor Cortical Signals by Particle Filtering
    • DOI 10.1152/jn.00438.2003
    • A Brockwell A Rojas R Kass 2004 Recursive Bayesian decoding of motor cortical signals by particle filtering Journal of Neurophysiology 91 1899 1907 1:STN:280:DC%2BD2c7itVWksA%3D%3D 10.1152/jn.00438.2003 15010499 (Pubitemid 38339355)
    • (2004) Journal of Neurophysiology , vol.91 , Issue.4 , pp. 1899-1907
    • Brockwell, A.E.1    Rojas, A.L.2    Kass, R.E.3
  • 9
    • 0032530363 scopus 로고    scopus 로고
    • A statistical paradigm for neural spike train decoding applied to position prediction from ensemble firing patterns of rat hippocampal place cells
    • 1:CAS:528:DyaK1cXmt1Sjtbk%3D 9736661
    • E Brown L Frank D Tang M Quirk M Wilson 1998 A statistical paradigm for neural spike train decoding applied to position prediction from ensemble firing patterns of rat hippocampal place cells Journal of Neuroscience 18 7411 7425 1:CAS:528:DyaK1cXmt1Sjtbk%3D 9736661
    • (1998) Journal of Neuroscience , vol.18 , pp. 7411-7425
    • Brown, E.1    Frank, L.2    Tang, D.3    Quirk, M.4    Wilson, M.5
  • 10
    • 2142765521 scopus 로고    scopus 로고
    • Multiple neural spike train data analysis: State-of-the-art and future challenges
    • DOI 10.1038/nn1228
    • E Brown R Kass P Mitra 2004 Multiple neural spike train data analysis: State-of-the-art and future challenges Nature Neuroscience 7 456 461 1:CAS:528:DC%2BD2cXjsFKltrg%3D 10.1038/nn1228 15114358 (Pubitemid 38552378)
    • (2004) Nature Neuroscience , vol.7 , Issue.5 , pp. 456-461
    • Brown, E.N.1    Kass, R.E.2    Mitra, P.P.3
  • 12
    • 0023688346 scopus 로고
    • Maximum likelihood identification of neural point process systems
    • 1:STN:280:DyaL1M%2Fmt1Gksg%3D%3D 10.1007/BF00332915 3196770
    • E Chornoboy L Schramm A Karr 1988 Maximum likelihood identification of neural point process systems Biological Cybernetics 59 265 275 1:STN:280:DyaL1M%2Fmt1Gksg%3D%3D 10.1007/BF00332915 3196770
    • (1988) Biological Cybernetics , vol.59 , pp. 265-275
    • Chornoboy, E.1    Schramm, L.2    Karr, A.3
  • 13
    • 62749148224 scopus 로고    scopus 로고
    • A computationally efficient method for modeling neural spiking activity with point processes nonparametrically
    • Coleman, T., & Sarma, S. (2007). A computationally efficient method for modeling neural spiking activity with point processes nonparametrically. IEEE Conference on Decision and Control.
    • (2007) IEEE Conference on Decision and Control
    • Coleman, T.1    Sarma, S.2
  • 14
    • 0038348981 scopus 로고    scopus 로고
    • Attractor dynamics of network UP states in the neocortex
    • DOI 10.1038/nature01614
    • R Cossart D Aronov R Yuste 2003 Attractor dynamics of network up states in the neocortex Nature 423 283 288 1:CAS:528:DC%2BD3sXjs1ynur0%3D 10.1038/nature01614 12748641 (Pubitemid 40852697)
    • (2003) Nature , vol.423 , Issue.6937 , pp. 283-288
    • Cossart, R.1    Aronov, D.2    Yuste, R.3
  • 16
    • 56449127430 scopus 로고    scopus 로고
    • Fast Gaussian process methods for point process intensity estimation
    • Cunningham, J. P., Shenoy, K. V., & Sahani, M. (2008). Fast Gaussian process methods for point process intensity estimation. ICML, 192-199.
    • (2008) ICML , pp. 192-199
    • Cunningham, J.P.1    Shenoy, K.V.2    Sahani, M.3
  • 17
    • 47549084085 scopus 로고    scopus 로고
    • Analysis of between-trial and within-trial neural spiking dynamics
    • 10.1152/jn.00343.2007 18216233
    • G Czanner U Eden S Wirth M Yanike W Suzuki E Brown 2008 Analysis of between-trial and within-trial neural spiking dynamics Journal of Neurophysiology 99 2672 2693 10.1152/jn.00343.2007 18216233
    • (2008) Journal of Neurophysiology , vol.99 , pp. 2672-2693
    • Czanner, G.1    Eden, U.2    Wirth, S.3    Yanike, M.4    Suzuki, W.5    Brown, E.6
  • 18
    • 20444434024 scopus 로고    scopus 로고
    • Estimation for state-space models: An approximate likelihood approach
    • R Davis G Rodriguez-Yam 2005 Estimation for state-space models: An approximate likelihood approach Statistica Sinica 15 381 406
    • (2005) Statistica Sinica , vol.15 , pp. 381-406
    • Davis, R.1    Rodriguez-Yam, G.2
  • 20
    • 0010045457 scopus 로고    scopus 로고
    • Bayesian curve fitting with free-knot splines
    • 10.1093/biomet/88.4.1055
    • I DiMatteo C Genovese R Kass 2001 Bayesian curve fitting with free-knot splines Biometrika 88 1055 1073 10.1093/biomet/88.4.1055
    • (2001) Biometrika , vol.88 , pp. 1055-1073
    • Dimatteo, I.1    Genovese, C.2    Kass, R.3
  • 21
    • 43049164375 scopus 로고    scopus 로고
    • Functional structure of the mitral cell dendritic tuft in the rat olfactory bulb
    • 1:CAS:528:DC%2BD1cXkvV2ht74%3D 10.1523/JNEUROSCI.5296-07.2008 18400905
    • M Djurisic M Popovic N Carnevale D Zecevic 2008 Functional structure of the mitral cell dendritic tuft in the rat olfactory bulb Journal of Neuroscience 28 15 4057 4068 1:CAS:528:DC%2BD1cXkvV2ht74%3D 10.1523/JNEUROSCI.5296-07.2008 18400905
    • (2008) Journal of Neuroscience , vol.28 , Issue.15 , pp. 4057-4068
    • Djurisic, M.1    Popovic, M.2    Carnevale, N.3    Zecevic, D.4
  • 22
    • 0036828974 scopus 로고    scopus 로고
    • Connecting cortex to machines: Recent advances in brain interfaces
    • DOI 10.1038/nn947
    • J Donoghue 2002 Connecting cortex to machines: Recent advances in brain interfaces Nature Neuroscience 5 1085 1088 1:CAS:528:DC%2BD38Xpt1entbc%3D 10.1038/nn947 12403992 (Pubitemid 35247205)
    • (2002) Nature Neuroscience , vol.5 , Issue.SUPPL. , pp. 1085-1088
    • Donoghue, J.P.1
  • 23
    • 0003665481 scopus 로고    scopus 로고
    • A. Doucet N. de Freitas N. Gordon (eds). Springer New York
    • Doucet, A., de Freitas, N., & Gordon, N. (Eds.) (2001). Sequential Monte Carlo in practice. New York: Springer.
    • (2001) Sequential Monte Carlo in Practice
  • 25
    • 1842733199 scopus 로고    scopus 로고
    • Dynamic Analysis of Neural Encoding by Point Process Adaptive Filtering
    • DOI 10.1162/089976604773135069
    • UT Eden LM Frank R Barbieri V Solo EN Brown 2004 Dynamic analyses of neural encoding by point process adaptive filtering Neural Computation 16 971 998 10.1162/089976604773135069 15070506 (Pubitemid 38483047)
    • (2004) Neural Computation , vol.16 , Issue.5 , pp. 971-998
    • Eden, U.T.1    Frank, L.M.2    Barbieri, R.3    Solo, V.4    Brown, E.N.5
  • 26
    • 33847716709 scopus 로고    scopus 로고
    • Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods
    • DOI 10.1109/TBME.2006.888821, 10
    • A Ergun R Barbieri U Eden M Wilson E Brown 2007 Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods IEEE Transactions on Biomedical Engineering 54 419 428 10.1109/TBME.2006.888821 17355053 (Pubitemid 46371228)
    • (2007) IEEE Transactions on Biomedical Engineering , vol.54 , Issue.3 , pp. 419-428
    • Ergun, A.1    Barbieri, R.2    Eden, U.T.3    Wilson, M.A.4    Brown, E.N.5
  • 27
    • 77956928186 scopus 로고    scopus 로고
    • Hidden Markov models applied toward the inference of neural states and the improved estimation of linear receptive fields
    • Escola, S., & Paninski, L. (2009). Hidden Markov models applied toward the inference of neural states and the improved estimation of linear receptive fields. Neural Computation (under review).
    • (2009) Neural Computation (Under Review)
    • Escola, S.1    Paninski, L.2
  • 28
    • 0002498495 scopus 로고
    • On Kalman filtering, posterior mode estimation and fisher scoring in dynamic exponential family regression
    • 10.1007/BF02613597
    • L Fahrmeir H Kaufmann 1991 On Kalman filtering, posterior mode estimation and fisher scoring in dynamic exponential family regression Metrika 38 37 60 10.1007/BF02613597
    • (1991) Metrika , vol.38 , pp. 37-60
    • Fahrmeir, L.1    Kaufmann, H.2
  • 30
    • 0036581332 scopus 로고    scopus 로고
    • Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: An adaptive filtering approach
    • 1:CAS:528:DC%2BD38Xjs1Sls7g%3D 11978857
    • L Frank U Eden V Solo M Wilson E Brown 2002 Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: An adaptive filtering approach Journal of Neuroscience 22 9 3817 3830 1:CAS:528:DC%2BD38Xjs1Sls7g%3D 11978857
    • (2002) Journal of Neuroscience , vol.22 , Issue.9 , pp. 3817-3830
    • Frank, L.1    Eden, U.2    Solo, V.3    Wilson, M.4    Brown, E.5
  • 31
    • 84898984007 scopus 로고    scopus 로고
    • Probabilistic inference of arm motion from neural activity in motor cortex
    • Y Gao M Black E Bienenstock S Shoham J Donoghue 2002 Probabilistic inference of arm motion from neural activity in motor cortex NIPS 14 221 228
    • (2002) NIPS , vol.14 , pp. 221-228
    • Gao, Y.1    Black, M.2    Bienenstock, E.3    Shoham, S.4    Donoghue, J.5
  • 32
    • 0012762691 scopus 로고    scopus 로고
    • Hidden Markov modeling of simultaneously recorded cells in the associative cortex of behaving monkeys
    • 10.1088/0954-898X/8/3/005
    • I Gat N Tishby M Abeles 1997 Hidden Markov modeling of simultaneously recorded cells in the associative cortex of behaving monkeys Network: Computation in Neural Systems 8 297 322 10.1088/0954-898X/8/3/005
    • (1997) Network: Computation in Neural Systems , vol.8 , pp. 297-322
    • Gat, I.1    Tishby, N.2    Abeles, M.3
  • 35
    • 18444404468 scopus 로고    scopus 로고
    • Stochastic modelling of single ion channels
    • J. Feng (eds). CRC Boca Raton
    • Hawkes, A. (2004). Stochastic modelling of single ion channels. In J. Feng (Ed.), Computational neuroscience: A comprehensive approach (pp. 131-158). Boca Raton: CRC.
    • (2004) Computational Neuroscience: A Comprehensive Approach , pp. 131-158
    • Hawkes, A.1
  • 37
    • 33746752672 scopus 로고    scopus 로고
    • Efficient estimation of detailed single-neuron models
    • DOI 10.1152/jn.00079.2006
    • Q Huys M Ahrens L Paninski 2006 Efficient estimation of detailed single-neuron models Journal of Neurophysiology 96 872 890 10.1152/jn.00079.2006 16624998 (Pubitemid 44159755)
    • (2006) Journal of Neurophysiology , vol.96 , Issue.2 , pp. 872-890
    • Huys, Q.J.M.1    Ahrens, M.B.2    Paninski, L.3
  • 38
    • 67049095670 scopus 로고    scopus 로고
    • Model-based smoothing of, and parameter estimation from, noisy biophysical recordings
    • 10.1371/journal.pcbi.1000379
    • Q Huys L Paninski 2009 Model-based smoothing of, and parameter estimation from, noisy biophysical recordings PLOS Computational Biology 5 1000379 10.1371/journal.pcbi.1000379
    • (2009) PLOS Computational Biology , vol.5 , pp. 1000379
    • Huys, Q.1    Paninski, L.2
  • 42
    • 37549006823 scopus 로고    scopus 로고
    • Monte Carlo estimation for nonlinear non-Gaussian state space models
    • 10.1093/biomet/asm074
    • B Jungbacker S Koopman 2007 Monte Carlo estimation for nonlinear non-Gaussian state space models Biometrika 94 827 839 10.1093/biomet/asm074
    • (2007) Biometrika , vol.94 , pp. 827-839
    • Jungbacker, B.1    Koopman, S.2
  • 44
    • 0346256712 scopus 로고    scopus 로고
    • Statistical smoothing of neuronal data
    • DOI 10.1088/0954-898X/14/1/301
    • R Kass V Ventura C Cai 2003 Statistical smoothing of neuronal data Network: Computation in Neural Systems 14 5 15 10.1088/0954-898X/14/1/301 (Pubitemid 38010855)
    • (2003) Network: Computation in Neural Systems , vol.14 , Issue.1 , pp. 5-15
    • Kass, R.E.1    Ventura, V.2    Cai, C.3
  • 45
    • 21544439557 scopus 로고    scopus 로고
    • Statistical issues in the analysis of neuronal data
    • DOI 10.1152/jn.00648.2004
    • RE Kass V Ventura EN Brown 2005 Statistical issues in the analysis of neuronal data Journal of Neurophysiology 94 8 25 10.1152/jn.00648.2004 15985692 (Pubitemid 40923224)
    • (2005) Journal of Neurophysiology , vol.94 , Issue.1 , pp. 8-25
    • Kass, R.E.1    Ventura, V.2    Brown, E.N.3
  • 46
    • 68949150856 scopus 로고    scopus 로고
    • Decoding V1 neuronal activity using particle filtering with Volterra kernels
    • R Kelly T Lee 2004 Decoding V1 neuronal activity using particle filtering with Volterra kernels Advances in Neural Information Processing Systems 15 1359 1366
    • (2004) Advances in Neural Information Processing Systems , vol.15 , pp. 1359-1366
    • Kelly, R.1    Lee, T.2
  • 47
    • 57149085744 scopus 로고    scopus 로고
    • Detecting neural-state transitions using hidden Markov models for motor cortical prostheses
    • 10.1152/jn.00924.2007 18614757
    • C Kemere G Santhanam BM Yu A Afshar SI Ryu TH Meng, et al. 2008 Detecting neural-state transitions using hidden Markov models for motor cortical prostheses Journal of Neurophysiology 100 2441 2452 10.1152/jn.00924.2007 18614757
    • (2008) Journal of Neurophysiology , vol.100 , pp. 2441-2452
    • Kemere, C.1    Santhanam, G.2    Yu, B.M.3    Afshar, A.4    Ryu, S.I.5    Meng, T.H.6
  • 48
    • 54949152231 scopus 로고    scopus 로고
    • Origin of correlated activity between parasol retinal ganglion cells
    • 10.1038/nn.2199
    • P Khuc-Trong F Rieke 2008 Origin of correlated activity between parasol retinal ganglion cells Nature Neuroscience 11 1343 1351 10.1038/nn.2199
    • (2008) Nature Neuroscience , vol.11 , pp. 1343-1351
    • Khuc-Trong, P.1    Rieke, F.2
  • 51
    • 77956892292 scopus 로고    scopus 로고
    • Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models
    • doi: 10.1007/s10827-009-0150-x
    • Koyama, S., & Paninski, L. (2009). Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models. Journal of Computational Neuroscience doi: 10.1007/s10827-009-0150-x.
    • (2009) Journal of Computational Neuroscience
    • Koyama, S.1    Paninski, L.2
  • 52
    • 35448977149 scopus 로고    scopus 로고
    • Common-input models for multiple neural spike-train data
    • 10.1080/09548980701625173
    • J Kulkarni L Paninski 2007 Common-input models for multiple neural spike-train data Network: Computation in Neural Systems 18 375 407 10.1080/09548980701625173
    • (2007) Network: Computation in Neural Systems , vol.18 , pp. 375-407
    • Kulkarni, J.1    Paninski, L.2
  • 54
    • 63249126388 scopus 로고    scopus 로고
    • Sequential optimal design of neurophysiology experiments
    • 10.1162/neco.2008.08-07-594 18928364
    • J Lewi R Butera L Paninski 2009 Sequential optimal design of neurophysiology experiments Neural Computation 21 619 687 10.1162/neco.2008.08- 07-594 18928364
    • (2009) Neural Computation , vol.21 , pp. 619-687
    • Lewi, J.1    Butera, R.2    Paninski, L.3
  • 56
    • 0034324119 scopus 로고    scopus 로고
    • Neural coding: Higher-order temporal patterns in the neuro-statistics of cell assemblies
    • 1:STN:280:DC%2BD3M%2FosFWhtg%3D%3D 10.1162/089976600300014872 11110130
    • L Martignon G Deco K Laskey M Diamond W Freiwald E Vaadia 2000 Neural coding: Higher-order temporal patterns in the neuro-statistics of cell assemblies Neural Computation 12 2621 2653 1:STN:280:DC%2BD3M%2FosFWhtg%3D%3D 10.1162/089976600300014872 11110130
    • (2000) Neural Computation , vol.12 , pp. 2621-2653
    • Martignon, L.1    Deco, G.2    Laskey, K.3    Diamond, M.4    Freiwald, W.5    Vaadia, E.6
  • 57
    • 84864615423 scopus 로고
    • Using em to obtain asymptotic variance-covariance matrices: The SEM algorithm
    • 10.2307/2290503
    • X-L Meng DB Rubin 1991 Using EM to obtain asymptotic variance-covariance matrices: The SEM algorithm Journal of the American Statistical Association 86 416 899 909 10.2307/2290503
    • (1991) Journal of the American Statistical Association , vol.86 , Issue.416 , pp. 899-909
    • Meng, X.-L.1    Rubin, D.B.2
  • 61
    • 33750501135 scopus 로고    scopus 로고
    • Network Variability Limits Stimulus-Evoked Spike Timing Precision in Retinal Ganglion Cells
    • DOI 10.1016/j.neuron.2006.09.014, PII S0896627306007215
    • G Murphy F Rieke 2006 Network variability limits stimulus-evoked spike timing precision in retinal ganglion cells Neuron 52 511 524 1:CAS:528:DC%2BD28Xht1KhtbnI 10.1016/j.neuron.2006.09.014 17088216 (Pubitemid 44667433)
    • (2006) Neuron , vol.52 , Issue.3 , pp. 511-524
    • Murphy, G.J.1    Rieke, F.2
  • 62
    • 0002788893 scopus 로고    scopus 로고
    • A view of the em algorithm that justifies incremental, sparse, and other variants
    • M. Jordan (eds). MIT Cambridge
    • Neal, R., & Hinton, G. (1999). A view of the EM algorithm that justifies incremental, sparse, and other variants. In M. Jordan (Ed.), Learning in graphical models (pp. 355-368). Cambridge: MIT.
    • (1999) Learning in Graphical Models , pp. 355-368
    • Neal, R.1    Hinton, G.2
  • 64
    • 84890878449 scopus 로고    scopus 로고
    • SLM microscopy: Scanless two-photon imaging and photostimulation using spatial light modulators
    • 10.3389/neuro.04.005.2008 19129923
    • V Nikolenko B Watson R Araya A Woodruff D Peterka R Yuste 2008 SLM microscopy: Scanless two-photon imaging and photostimulation using spatial light modulators Frontiers in Neural Circuits 2 5 10.3389/neuro.04.005.2008 19129923
    • (2008) Frontiers in Neural Circuits , vol.2 , pp. 5
    • Nikolenko, V.1    Watson, B.2    Araya, R.3    Woodruff, A.4    Peterka, D.5    Yuste, R.6
  • 65
    • 29144507409 scopus 로고    scopus 로고
    • Revealing pairwise coupling in linear-nonlinear networks
    • DOI 10.1137/S0036139903437072
    • D Nykamp 2005 Revealing pairwise coupling in linear-nonlinear networks SIAM Journal on Applied Mathematics 65 2005 2032 10.1137/S0036139903437072 (Pubitemid 41802088)
    • (2005) SIAM Journal on Applied Mathematics , vol.65 , Issue.6 , pp. 2005-2032
    • Nykamp, D.Q.1
  • 66
    • 33845459534 scopus 로고    scopus 로고
    • A mathematical framework for inferring connectivity in probabilistic neuronal networks
    • DOI 10.1016/j.mbs.2006.08.020, PII S0025556406001556
    • D Nykamp 2007 A mathematical framework for inferring connectivity in probabilistic neuronal networks Mathematical Biosciences 205 204 251 10.1016/j.mbs.2006.08.020 17070863 (Pubitemid 44894450)
    • (2007) Mathematical Biosciences , vol.205 , Issue.2 , pp. 204-251
    • Nykamp, D.Q.1
  • 67
    • 14144249743 scopus 로고    scopus 로고
    • Functional imaging with cellular resolution reveals precise microarchitecture in visual cortex
    • DOI 10.1038/nature03274
    • K Ohki S Chung Y Ch'ng P Kara C Reid 2005 Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex Nature 433 597 603 1:CAS:528:DC%2BD2MXhtFaqsbk%3D 10.1038/nature03274 15660108 (Pubitemid 40282986)
    • (2005) Nature , vol.433 , Issue.7026 , pp. 597-603
    • Ohki, K.1    Chung, S.2    Ch'ng, Y.H.3    Kara, P.4    Reid, R.C.5
  • 68
    • 34247192555 scopus 로고    scopus 로고
    • State-space models: From the em algorithm to a gradient approach
    • 10.1162/neco.2007.19.4.1097
    • RK Olsson KB Petersen T Lehn-Schioler 2007 State-space models: From the EM algorithm to a gradient approach Neural Computation 19 1097 1111 10.1162/neco.2007.19.4.1097
    • (2007) Neural Computation , vol.19 , pp. 1097-1111
    • Olsson, R.K.1    Petersen, K.B.2    Lehn-Schioler, T.3
  • 69
    • 9744274025 scopus 로고    scopus 로고
    • Maximum likelihood estimation of cascade point-process neural encoding models
    • DOI 10.1088/0954-898X/15/4/002, PII S0954898X04757802
    • L Paninski 2004 Maximum likelihood estimation of cascade point-process neural encoding models Network: Computation in Neural Systems 15 243 262 10.1088/0954-898X/15/4/002 (Pubitemid 39586479)
    • (2004) Network: Computation in Neural Systems , vol.15 , Issue.4 , pp. 243-262
    • Paninski, L.1
  • 70
    • 84899012151 scopus 로고    scopus 로고
    • Log-concavity results on Gaussian process methods for supervised and unsupervised learning
    • Paninski, L. (2005). Log-concavity results on Gaussian process methods for supervised and unsupervised learning. Advances in Neural Information Processing Systems, 17.
    • (2005) Advances in Neural Information Processing Systems , pp. 17
    • Paninski, L.1
  • 71
    • 77956898445 scopus 로고    scopus 로고
    • Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods
    • Paninski, L. (2009). Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods. Journal of Computational Neuroscience (under review).
    • (2009) Journal of Computational Neuroscience (Under Review)
    • Paninski, L.1
  • 72
    • 4744360960 scopus 로고    scopus 로고
    • Superlinear population encoding of dynamic hand trajectory in primary motor cortex
    • DOI 10.1523/JNEUROSCI.0919-04.2004
    • L Paninski M Fellows S Shoham N Hatsopoulos J Donoghue 2004 Superlinear population encoding of dynamic hand trajectory in primary motor cortex Journal of Neuroscience 24 8551 8561 1:CAS:528:DC%2BD2cXosVOjt7o%3D 10.1523/JNEUROSCI. 0919-04.2004 15456829 (Pubitemid 39313778)
    • (2004) Journal of Neuroscience , vol.24 , Issue.39 , pp. 8551-8561
    • Paninski, L.1    Shoham, S.2    Fellows, M.R.3    Hatsopoulos, N.G.4    Donoghue, J.P.5
  • 73
    • 77953321523 scopus 로고    scopus 로고
    • State-space methods for inferring synaptic inputs and weights
    • Paninski, L., & Ferreira, D. (2008). State-space methods for inferring synaptic inputs and weights. COSYNE.
    • (2008) COSYNE
    • Paninski, L.1    Ferreira, D.2
  • 76
    • 77956940930 scopus 로고    scopus 로고
    • Model-based decoding, information estimation, and change-point detection in multi-neuron spike trains
    • Pillow, J., Ahmadian, Y., & Paninski, L. (2009). Model-based decoding, information estimation, and change-point detection in multi-neuron spike trains. Neural Computation (under review).
    • (2009) Neural Computation (Under Review)
    • Pillow, J.1    Ahmadian, Y.2    Paninski, L.3
  • 77
    • 50049100348 scopus 로고    scopus 로고
    • Spatiotemporal correlations and visual signaling in a complete neuronal population
    • 1:CAS:528:DC%2BD1cXhtVWnsrbK 10.1038/nature07140 18650810
    • J Pillow J Shlens L Paninski A Sher A Litke E Chichilnisky, et al. 2008 Spatiotemporal correlations and visual signaling in a complete neuronal population Nature 454 995 999 1:CAS:528:DC%2BD1cXhtVWnsrbK 10.1038/nature07140 18650810
    • (2008) Nature , vol.454 , pp. 995-999
    • Pillow, J.1    Shlens, J.2    Paninski, L.3    Sher, A.4    Litke, A.5    Chichilnisky, E.6
  • 79
    • 11344254404 scopus 로고    scopus 로고
    • Direction selectivity of excitation and inhibition in simple cells of the cat primary visual cortex
    • DOI 10.1016/j.neuron.2004.12.024, PII S0896627304008402
    • N Priebe D Ferster 2005 Direction selectivity of excitation and inhibition in simple cells of the cat primary visual cortex Neuron 45 133 145 1:CAS:528:DC%2BD2MXmtl2rsg%3D%3D 10.1016/j.neuron.2004.12.024 15629708 (Pubitemid 40075355)
    • (2005) Neuron , vol.45 , Issue.1 , pp. 133-145
    • Priebe, N.J.1    Ferster, D.2
  • 80
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • 10.1109/5.18626
    • L Rabiner 1989 A tutorial on hidden Markov models and selected applications in speech recognition Proceedings of the IEEE 77 257 286 10.1109/5.18626
    • (1989) Proceedings of the IEEE , vol.77 , pp. 257-286
    • Rabiner, L.1
  • 81
    • 77956900110 scopus 로고    scopus 로고
    • Efficient estimation of two-dimensional firing rate surfaces via Gaussian process methods
    • Rahnama, K., Rad & Paninski, L. (2009). Efficient estimation of two-dimensional firing rate surfaces via Gaussian process methods. Network (under review).
    • (2009) Network (Under Review)
    • Rahnama, K.1    Rad2    Paninski, L.3
  • 85
    • 0033556862 scopus 로고    scopus 로고
    • A unifying review of linear Gaussian models
    • 1:STN:280:DyaK1M7js1Slug%3D%3D 10.1162/089976699300016674 9950734
    • S Roweis Z Ghahramani 1999 A unifying review of linear Gaussian models Neural Computation 11 305 345 1:STN:280:DyaK1M7js1Slug%3D%3D 10.1162/089976699300016674 9950734
    • (1999) Neural Computation , vol.11 , pp. 305-345
    • Roweis, S.1    Ghahramani, Z.2
  • 86
    • 0000413899 scopus 로고
    • An accelerated lambda iteration method for multilevel radiative transfer, appendix b: Fast solution for the diagonal elements of the inverse of a tridiagonal matrix
    • 1:CAS:528:DyaK3MXlsVGlu70%3D
    • G Rybicki D Hummer 1991 An accelerated lambda iteration method for multilevel radiative transfer, appendix b: Fast solution for the diagonal elements of the inverse of a tridiagonal matrix Astronomy and Astrophysics 245 171 1:CAS:528:DyaK3MXlsVGlu70%3D
    • (1991) Astronomy and Astrophysics , vol.245 , pp. 171
    • Rybicki, G.1    Hummer, D.2
  • 87
    • 0000247693 scopus 로고
    • Class of fast methods for processing irregularly sampled or otherwise inhomogeneous one-dimensional data
    • 1:CAS:528:DyaK2MXjs1Kis70%3D 10.1103/PhysRevLett.74.1060 10058924
    • GB Rybicki WH Press 1995 Class of fast methods for processing irregularly sampled or otherwise inhomogeneous one-dimensional data Physical Review Letters 74 7 1060 1063 1:CAS:528:DyaK2MXjs1Kis70%3D 10.1103/PhysRevLett.74.1060 10058924
    • (1995) Physical Review Letters , vol.74 , Issue.7 , pp. 1060-1063
    • Rybicki, G.B.1    Press, W.H.2
  • 89
    • 33646170322 scopus 로고    scopus 로고
    • Weak pairwise correlations imply strongly correlated network states in a neural population
    • 1:CAS:528:DC%2BD28Xjs1agtL8%3D 10.1038/nature04701 16625187
    • E Schneidman M Berry R Segev W Bialek 2006 Weak pairwise correlations imply strongly correlated network states in a neural population Nature 440 1007 1012 1:CAS:528:DC%2BD28Xjs1agtL8%3D 10.1038/nature04701 16625187
    • (2006) Nature , vol.440 , pp. 1007-1012
    • Schneidman, E.1    Berry, M.2    Segev, R.3    Bialek, W.4
  • 90
    • 0037421736 scopus 로고    scopus 로고
    • Multineuronal firing patterns in the signal from eye to brain
    • DOI 10.1016/S0896-6273(03)00004-7
    • M Schnitzer M Meister 2003 Multineuronal firing patterns in the signal from eye to brain Neuron 37 499 511 1:CAS:528:DC%2BD3sXhsVOmurk%3D 10.1016/S0896-6273(03)00004-7 12575956 (Pubitemid 36183370)
    • (2003) Neuron , vol.37 , Issue.3 , pp. 499-511
    • Schnitzer, M.J.1    Meister, M.2
  • 92
    • 65549161518 scopus 로고    scopus 로고
    • The structure of large-scale synchronized firing in primate retina
    • 1:CAS:528:DC%2BD1MXltFShsbs%3D 10.1523/JNEUROSCI.5187-08.2009 19369571
    • J Shlens GD Field JL Gauthier M Greschner A Sher AM Litke, et al. 2009 The structure of large-scale synchronized firing in primate retina Journal of Neuroscience 29 5022 5031 1:CAS:528:DC%2BD1MXltFShsbs%3D 10.1523/JNEUROSCI.5187- 08.2009 19369571
    • (2009) Journal of Neuroscience , vol.29 , pp. 5022-5031
    • Shlens, J.1    Field, G.D.2    Gauthier, J.L.3    Greschner, M.4    Sher, A.5    Litke, A.M.6
  • 96
    • 0038605051 scopus 로고    scopus 로고
    • Estimating a state-space model from point process observations
    • DOI 10.1162/089976603765202622
    • A Smith E Brown 2003 Estimating a state-space model from point process observations Neural Computation 15 965 991 10.1162/089976603765202622 12803953 (Pubitemid 37049798)
    • (2003) Neural Computation , vol.15 , Issue.5 , pp. 965-991
    • Smith, A.C.1    Brown, E.N.2
  • 98
    • 14144252284 scopus 로고    scopus 로고
    • Analysis and design of behavioral experiments to characterize population learning
    • DOI 10.1152/jn.00765.2004
    • AC Smith MR Stefani B Moghaddam EN Brown 2005 Analysis and design of behavioral experiments to characterize population learning Journal of Neurophysiology 93 3 1776 1792 10.1152/jn.00765.2004 15456798 (Pubitemid 40283755)
    • (2005) Journal of Neurophysiology , vol.93 , Issue.3 , pp. 1776-1792
    • Smith, A.C.1    Stefani, M.R.2    Moghaddam, B.3    Brown, E.N.4
  • 100
    • 33749446319 scopus 로고    scopus 로고
    • A state-space analysis for reconstruction of goal-directed movements using neural signals
    • DOI 10.1162/neco.2006.18.10.2465
    • L Srinivasan U Eden A Willsky E Brown 2006 A state-space analysis for reconstruction of goal-directed movements using neural signals Neural Computation 18 2465 2494 10.1162/neco.2006.18.10.2465 16907633 (Pubitemid 44511771)
    • (2006) Neural Computation , vol.18 , Issue.10 , pp. 2465-2494
    • Srinivasan, L.1    Eden, U.T.2    Willsky, A.S.3    Brown, E.N.4
  • 101
    • 27544511377 scopus 로고    scopus 로고
    • Behavioral and neurophysiological analyses of dynamic learning processes
    • DOI 10.1177/1534582305280030
    • WA Suzuki EN Brown 2005 Behavioral and neurophysiological analyses of dynamic learning processes Behavioral & Cognitive Neuroscience Reviews 4 2 67 95 10.1177/1534582305280030 (Pubitemid 41537207)
    • (2005) Behavioral and Cognitive Neuroscience Reviews , vol.4 , Issue.2 , pp. 67-95
    • Suzuki, W.A.1    Brown, E.N.2
  • 102
    • 12544253489 scopus 로고    scopus 로고
    • A point process framework for relating neural spiking activity to spiking history, neural ensemble and extrinsic covariate effects
    • 10.1152/jn.00697.2004 15356183
    • W Truccolo U Eden M Fellows J Donoghue E Brown 2005 A point process framework for relating neural spiking activity to spiking history, neural ensemble and extrinsic covariate effects Journal of Neurophysiology 93 1074 1089 10.1152/jn.00697.2004 15356183
    • (2005) Journal of Neurophysiology , vol.93 , pp. 1074-1089
    • Truccolo, W.1    Eden, U.2    Fellows, M.3    Donoghue, J.4    Brown, E.5
  • 103
    • 0007962152 scopus 로고    scopus 로고
    • A new method for detecting neural interconnectivity
    • 10.1007/s004220050359
    • K Utikal 1997 A new method for detecting neural interconnectivity Biological Cyberkinetics 76 459 470 10.1007/s004220050359
    • (1997) Biological Cyberkinetics , vol.76 , pp. 459-470
    • Utikal, K.1
  • 104
    • 77956933428 scopus 로고    scopus 로고
    • Inferring functional connectivity in an ensemble of retinal ganglion cells sharing a common input
    • Vidne, M., Kulkarni, J., Ahmadian, Y., Pillow, J., Shlens, J., Chichilnisky, E., et al. (2009). Inferring functional connectivity in an ensemble of retinal ganglion cells sharing a common input. COSYNE.
    • (2009) COSYNE
    • Vidne, M.1    Kulkarni, J.2    Ahmadian, Y.3    Pillow, J.4    Shlens, J.5    Chichilnisky, E.6
  • 106
    • 77956895315 scopus 로고    scopus 로고
    • Model-based optimal inference of spike times and calcium dynamics given noisy and intermittent calcium-fluorescence imaging
    • Vogelstein, J., Watson, B., Packer, A., Jedynak, B., Yuste, R., & Paninski, L., (2009). Model-based optimal inference of spike times and calcium dynamics given noisy and intermittent calcium-fluorescence imaging. Biophysical Journal. http://www.stat.columbia.edu/liam/research/abstracts/vogelsteinbj08- abs.html.
    • (2009) Biophysical Journal
    • Vogelstein, J.1    Watson, B.2    Packer, A.3    Jedynak, B.4    Yuste, R.5    Paninski, L.6
  • 108
    • 34547212864 scopus 로고    scopus 로고
    • Feedforward Excitation and Inhibition Evoke Dual Modes of Firing in the Cat's Visual Thalamus during Naturalistic Viewing
    • DOI 10.1016/j.neuron.2007.06.039, PII S0896627307004965
    • X Wang Y Wei V Vaingankar Q Wang K Koepsell F Sommer J Hirsch 2007 Feedforward excitation and inhibition evoke dual modes of firing in the cat's visual thalamus during naturalistic viewing Neuron 55 465 478 1:CAS:528:DC%2BD2sXpsVGlt74%3D 10.1016/j.neuron.2007.06.039 17678858 (Pubitemid 47126264)
    • (2007) Neuron , vol.55 , Issue.3 , pp. 465-478
    • Wang, X.1    Wei, Y.2    Vaingankar, V.3    Wang, Q.4    Koepsell, K.5    Sommer, F.T.6    Hirsch, J.A.7
  • 109
    • 0030686449 scopus 로고    scopus 로고
    • Decoding visual information from a population of retinal ganglion cells
    • 1:STN:280:DyaK1c%2FisVSlug%3D%3D 9356386
    • D Warland P Reinagel M Meister 1997 Decoding visual information from a population of retinal ganglion cells Journal of Neurophysiology 78 2336 2350 1:STN:280:DyaK1c%2FisVSlug%3D%3D 9356386
    • (1997) Journal of Neurophysiology , vol.78 , pp. 2336-2350
    • Warland, D.1    Reinagel, P.2    Meister, M.3
  • 110
    • 0344120308 scopus 로고    scopus 로고
    • Balanced inhibition underlies tuning and sharpens spike timing in auditory cortex
    • DOI 10.1038/nature02116
    • M Wehr A Zador 2003 Balanced inhibition underlies tuning and sharpens spike timing in auditory cortex Nature 426 442 446 1:CAS:528: DC%2BD3sXpt1Gls7g%3D 10.1038/nature02116 14647382 (Pubitemid 37490130)
    • (2003) Nature , vol.426 , Issue.6965 , pp. 442-446
    • Wehr, M.1    Zador, A.M.2
  • 112
    • 33644876951 scopus 로고    scopus 로고
    • Bayesian population decoding of motor cortical activity using a Kalman filter
    • DOI 10.1162/089976606774841585
    • W Wu Y Gao E Bienenstock JP Donoghue MJ Black 2006 Bayesian population coding of motor cortical activity using a Kalman filter Neural Computation 18 80 118 10.1162/089976606774841585 16354382 (Pubitemid 43543852)
    • (2006) Neural Computation , vol.18 , Issue.1 , pp. 80-118
    • Wu, W.1    Gao, Y.2    Bienenstock, E.3    Donoghue, J.P.4    Black, M.J.5
  • 114
    • 34548384939 scopus 로고    scopus 로고
    • Rethinking tuning: In vivo whole-cell recordings of the inferior colliculus in awake bats
    • DOI 10.1523/JNEUROSCI.2865-07.2007
    • R Xie JX Gittelman GD Pollak 2007 Rethinking tuning: In vivo whole-cell recordings of the inferior colliculus in awake bats Journal of Neuroscience 27 35 9469 9481 1:CAS:528:DC%2BD2sXhtVaksLzN 10.1523/JNEUROSCI.2865-07.2007 17728460 (Pubitemid 47358218)
    • (2007) Journal of Neuroscience , vol.27 , Issue.35 , pp. 9469-9481
    • Xie, R.1    Gittelman, J.X.2    Pollak, G.D.3
  • 115
    • 77956897530 scopus 로고    scopus 로고
    • Iterated extended Kalman smoothing with expectation-propagation
    • A Ypma T Heskes 2003 Iterated extended Kalman smoothing with expectation-propagation Neural Networks for Signal Processing 2003 219 228
    • (2003) Neural Networks for Signal Processing , vol.2003 , pp. 219-228
    • Ypma, A.1    Heskes, T.2
  • 117
    • 54249147446 scopus 로고    scopus 로고
    • Neural decoding of movements: From linear to nonlinear trajectory models
    • Yu, B. M., Cunningham, J. P., Shenoy, K. V., & Sahani, M. (2007). Neural decoding of movements: From linear to nonlinear trajectory models. ICONIP, 586-595.
    • (2007) ICONIP , pp. 586-595
    • Yu, B.M.1    Cunningham, J.P.2    Shenoy, K.V.3    Sahani, M.4
  • 119
    • 48049115018 scopus 로고    scopus 로고
    • Expectation propagation for inference in non-linear dynamical models with Poisson observations
    • IEEE Piscataway. 10.1109/NSSPW.2006.4378825
    • Yu, B. M., Shenoy, K. V., & Sahani, M. (2006). Expectation propagation for inference in non-linear dynamical models with Poisson observations. In Proceedings of the nonlinear statistical signal processing workshop (pp. 83-86). Piscataway: IEEE.
    • (2006) Proceedings of the Nonlinear Statistical Signal Processing Workshop , pp. 83-86
    • Yu, B.M.1    Shenoy, K.V.2    Sahani, M.3
  • 120
    • 0031930592 scopus 로고    scopus 로고
    • Interpreting neuronal population activity by reconstruction: Unified framework with application to hippocampal place cells
    • 1:STN:280:DyaK1c7jtVKksA%3D%3D 9463459
    • K Zhang I Ginzburg B McNaughton T Sejnowski 1998 Interpreting neuronal population activity by reconstruction: Unified framework with application to hippocampal place cells Journal of Neurophysiology 79 1017 1044 1:STN:280:DyaK1c7jtVKksA%3D%3D 9463459
    • (1998) Journal of Neurophysiology , vol.79 , pp. 1017-1044
    • Zhang, K.1    Ginzburg, I.2    McNaughton, B.3    Sejnowski, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.