DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: Effects of DNA bends

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 23, 2004, Pages 8608-8613

  Stupina, Vera A ^a,b   Wang, James C ^a  

^a HARVARD UNIVERSITY   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DNA; DNA TOPOISOMERASE;

ARTICLE; BACTERIAL STRAIN; BASE PAIRING; CELL MEMBRANE; DNA SUPERCOILING; DNA TRANSCRIPTION; ESCHERICHIA COLI; NONHUMAN; PLASMID; PRIORITY JOURNAL;

ANTIPORTERS; BACTERIAL PROTEINS; DIFFUSION; DNA TOPOISOMERASES, TYPE I, BACTERIAL; DNA, BACTERIAL; DNA, SUPERHELICAL; ESCHERICHIA COLI; NUCLEIC ACID CONFORMATION; PLASMIDS; ROTATION; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 2942556663     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0402849101     Document Type: Article

References (34)

1. Gellert, M., Mizuuchi, K., O'Dea, M. H. & Nash, H. A. (1976) Proc. Natl. Acad. Sci. USA 73, 3872-3876.
2. Wang, J. C. (1971) J. Mol. Biol. 55, 523-533.
3. Lockshon, D. & Morris, D. R. (1983) Nucleic Acids Res. 11, 2999-3017.
4. Pruss, G. J. (1985) J. Mol. Biol. 185, 51-63.
5. Pruss, G. J. & Drlica, K. (1986) Proc. Natl. Acad. Sci. USA 83, 8952-8956.
6. Liu, L. F. & Wang, J. C. (1987) Proc. Natl. Acad. Sci. USA 84, 7024-7027.
7. Maaloe, O. & Kjeldgard, N. O. (1966) Control of Macromolecular Syntheses (Benjamin, New York).
8. Wang, J. C. (1973). in DNA Synthesis in Vitro, eds. Wells R. D. Inman, R. B. (University Park Press, Baltimore), pp. 163-174.
9. Gamper, H. B. & Hearst, J. E. (1982) Cell 29, 81-90.
10. Khodursky, A. B., Peter, B. J., Schmid, M. B., DeRisi, J., Botstein, D., Brown, P. O. & Cozzarelli, N. R. (2000) Proc. Natl. Acad. Sci. USA 97, 9419-9424.
11. Crisona, N. J., Strick, T. R., Bensimon, D., Croquette, V. & Cozzarelli, N. R. (2000) Genes Dev. 14, 2881-2892.
12. Wu, H. Y., Shyy, S. H., Wang, J. C. & Liu, L. F. (1988) Cell 53, 433-440.
13. Zechiedrich, E. L., Khodursky, A. B., Bachellier, S., Schneider, R., Chen, D., Lilley, D. M. & Cozzarelli, N. R. (2000) J. Biol. Chem. 275, 8103-8113.
14. Lodge, J. K., Kazic, T. & Berg, D. E. (1989) J. Bacteriol. 171, 2181-2187.
15. Cook, D. N., Ma, D., Pon, N. G. & Hearst, J. E. (1992) Proc. Natl. Acad. Sci. USA 89, 10603-10607.
16. Lynch, A. S. & Wang, J. C. (1993) J. Bacteriol. 175, 1645-1655.
17. Ma, D., Cook, D. N., Pon, N. G. & Hearst, J. E. (1994) J. Biol. Chem. 269, 15362-15370.
18. Nelson, P. (1999) Proc. Natl. Acad. Sci. USA 96, 14342-14347.
19. Chen, D. & Lilley, D. M. (1999) J. Mol. Biol. 285, 443-448.
20. DiNardo, S., Voelkel, K. A., Sternglanz, R., Reynolds, A. E. & Wright, A. (1982) Cell 31, 43-51.
21. McEachern, F. & Fisher, L. M. (1989) FEBS Lett. 253, 67-70.
22. Lynch, A. S. & Wang, J. C. (1994) J. Mol. Biol. 236, 679-684.
23. Bjornsti, M. A. & Wang, J. C. (1987) Proc. Natl. Acad. Sci. USA 84, 8971-8975.
24. Peck, L. J. & Wang, J. C. (1983) Proc. Natl. Acad. Sci. USA 80, 6206-6210.
25. Wang, J. C. (1969) J. Mol. Biol. 43, 263-272.
26. Cheng, B., Zhu, C. X., Ji, C., Ahumada, A. & Tse-Dinh, Y. C. (2003) J. Biol. Chem. 278, 30705-30710.
27. Thomen, P., Bockelmann, U. & Heslot, F. (June 3, 2004). Phys. Rev. Lett. 10.1103/PhysRevLett.88.248102.
28. Leng, F. & McMacken, R. (2002) Proc. Natl. Acad. Sci. USA 99, 9139-9144.
29. Tsao, Y. P., Wu, H. Y. & Liu, L. F. (1989) Cell 56, 111-118.
30. Cramer, P. (2002) Curr. Opin. Struct. Biol. 12, 89-97.
31. Hagerman, P. J. (1985) Biochemistry 24, 7033-7037.
32. Marini, J. C., Levene, S. D., Crothers, D. M. & Englund, P. T. (1982) Proc. Natl. Acad. Sci. USA 79, 7664-7668, and correction (1982) 80, 7978.
33. Kitchin, P. A., Klein, V. A., Ryan, K. A., Gann, K. L., Rauch, C. A., Kang, D. S., Wells, R. D. & Englund, P. T. (1988) J. Biol. Chem. 261, 11302-11309.
34. Inokuchi, K., Nakayama, A. & Hishinoma, F. (1988) Nucleic Acids Res. 16, 6693-6711.