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Volumn 5, Issue 11, 2009, Pages

A threading-based method for the prediction of DNA-binding proteins with application to the human genome

Author keywords

[No Author keywords available]

Indexed keywords

BENCHMARKING; BINDING SITES; DNA; DNA SEQUENCES; GENE ONTOLOGY; GENES; KNOWLEDGE BASED SYSTEMS; PROTEINS;

EID: 73449119593     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000567     Document Type: Article
Times cited : (69)

References (68)
  • 1
    • 7244245762 scopus 로고    scopus 로고
    • Collins FS, Lander ES, Rogers J, Waterston RH, Int Human Genome Sequencing C (2004) Finishing the euchromatic sequence of the human genome. Nature 431: 931-945.
    • Collins FS, Lander ES, Rogers J, Waterston RH, Int Human Genome Sequencing C (2004) Finishing the euchromatic sequence of the human genome. Nature 431: 931-945.
  • 3
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 4
    • 24644462173 scopus 로고    scopus 로고
    • Accurate multiplex polony sequencing of an evolved bacterial genome
    • Shendure J, Porreca GJ, Reppas NB, Lin XX, McCutcheon JP, et al. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309: 1728-1732.
    • (2005) Science , vol.309 , pp. 1728-1732
    • Shendure, J.1    Porreca, G.J.2    Reppas, N.B.3    Lin, X.X.4    McCutcheon, J.P.5
  • 5
    • 42249087308 scopus 로고    scopus 로고
    • Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, et al. (2008) The complete genome of an individual by massively parallel DNA sequencing. Nature 452: 872-U875.
    • Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, et al. (2008) The complete genome of an individual by massively parallel DNA sequencing. Nature 452: 872-U875.
  • 6
    • 33644520519 scopus 로고    scopus 로고
    • Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC (2006) The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res 34: D332-D334.
    • Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC (2006) The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res 34: D332-D334.
  • 7
    • 33644873213 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt): An expanding universe of protein information
    • Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, et al. (2006) The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 34: D187-D191.
    • (2006) Nucleic Acids Res , vol.34
    • Wu, C.H.1    Apweiler, R.2    Bairoch, A.3    Natale, D.A.4    Barker, W.C.5
  • 8
    • 36448988254 scopus 로고    scopus 로고
    • Predicting protein function from sequence and structure
    • Lee D, Redfern O, Orengo C (2007) Predicting protein function from sequence and structure. Nat Rev Mol Cell Biol 8: 995-1005.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 995-1005
    • Lee, D.1    Redfern, O.2    Orengo, C.3
  • 10
    • 0346799108 scopus 로고    scopus 로고
    • Prediction of protein function from protein sequence and structure
    • Whisstock JC, Lesk AM (2003) Prediction of protein function from protein sequence and structure. Q Rev Biophys 36: 307-340.
    • (2003) Q Rev Biophys , vol.36 , pp. 307-340
    • Whisstock, J.C.1    Lesk, A.M.2
  • 11
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.H.4    Zhang, Z.5
  • 12
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm L, Sander C (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233: 123-138.
    • (1993) J Mol Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 13
    • 0028181441 scopus 로고
    • Hidden markov models in computational biology - applications to protein modeling
    • Krogh A, Brown M, Mian IS, Sjolander K, Haussler D (1994) Hidden markov models in computational biology - applications to protein modeling. J Mol Biol 235: 1501-1531.
    • (1994) J Mol Biol , vol.235 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mian, I.S.3    Sjolander, K.4    Haussler, D.5
  • 14
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov IN, Bourne PE (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng 11: 739-747.
    • (1998) Protein Eng , vol.11 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 15
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: A protein structure alignment algorithm based on the TM-score
    • Zhang Y, Skolnick J (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res 33: 2302-2309.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 16
    • 0141853954 scopus 로고    scopus 로고
    • Assessment of genome-wide protein function classification for Drosophila melanogaster
    • Mi HY, Vandergriff J, Campbell M, Narechania A, Majoros W, et al. (2003) Assessment of genome-wide protein function classification for Drosophila melanogaster. Genome Res 13: 2118-2128.
    • (2003) Genome Res , vol.13 , pp. 2118-2128
    • Mi, H.Y.1    Vandergriff, J.2    Campbell, M.3    Narechania, A.4    Majoros, W.5
  • 17
    • 13444280436 scopus 로고    scopus 로고
    • EFICAz: A comprehensive approach for accurate genome-scale enzyme function inference
    • Tian WD, Arakaki AK, Skolnick J (2004) EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference. Nucleic Acids Res 32: 6226-6239.
    • (2004) Nucleic Acids Res , vol.32 , pp. 6226-6239
    • Tian, W.D.1    Arakaki, A.K.2    Skolnick, J.3
  • 18
    • 40749111548 scopus 로고    scopus 로고
    • ConFunc - functional annotation in the twilight zone
    • Wass MN, Sternberg MJE (2008) ConFunc - functional annotation in the twilight zone. Bioinformatics 24: 798-806.
    • (2008) Bioinformatics , vol.24 , pp. 798-806
    • Wass, M.N.1    Sternberg, M.J.E.2
  • 19
    • 47249125424 scopus 로고    scopus 로고
    • DBD-Hunter: A knowledge-based method for the prediction of DNA-protein interactions
    • Gao M, Skolnick J (2008) DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions. Nucleic Acids Res 36: 3978-3992.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3978-3992
    • Gao, M.1    Skolnick, J.2
  • 20
    • 0033964710 scopus 로고    scopus 로고
    • From genes to protein structure and function: Novel applications of computational approaches in the genomic era
    • Skolnick J, Fetrow JS (2000) From genes to protein structure and function: novel applications of computational approaches in the genomic era. Trends Biotechnol 18: 34-39.
    • (2000) Trends Biotechnol , vol.18 , pp. 34-39
    • Skolnick, J.1    Fetrow, J.S.2
  • 21
    • 0034677669 scopus 로고    scopus 로고
    • Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
    • Wilson CA, Kreychman J, Gerstein M (2000) Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J Mol Biol 297: 233-249.
    • (2000) J Mol Biol , vol.297 , pp. 233-249
    • Wilson, C.A.1    Kreychman, J.2    Gerstein, M.3
  • 22
    • 0036308741 scopus 로고    scopus 로고
    • Enzyme function less conserved than anticipated
    • Rost B (2002) Enzyme function less conserved than anticipated. J Mol Biol 318: 595-608.
    • (2002) J Mol Biol , vol.318 , pp. 595-608
    • Rost, B.1
  • 23
    • 0142106373 scopus 로고    scopus 로고
    • How well is enzyme function conserved as a function of pairwise sequence identity?
    • Tian WD, Skolnick J (2003) How well is enzyme function conserved as a function of pairwise sequence identity? J Mol Biol 333: 863-882.
    • (2003) J Mol Biol , vol.333 , pp. 863-882
    • Tian, W.D.1    Skolnick, J.2
  • 24
    • 0037110589 scopus 로고    scopus 로고
    • MULTIPROSPECTOR: An algorithm for the prediction of protein-protein interactions by multimeric threading
    • Lu L, Lu H, Skolnick J (2002) MULTIPROSPECTOR: An algorithm for the prediction of protein-protein interactions by multimeric threading. Proteins: Struct Funct Genet 49: 350-364.
    • (2002) Proteins: Struct Funct Genet , vol.49 , pp. 350-364
    • Lu, L.1    Lu, H.2    Skolnick, J.3
  • 26
    • 20544460658 scopus 로고    scopus 로고
    • PROTEIN-DNA recognition patterns and predictions
    • Sarai A, Kono H (2005) PROTEIN-DNA recognition patterns and predictions. Annu Rev Biophys Biomol Struct 34: 379-398.
    • (2005) Annu Rev Biophys Biomol Struct , vol.34 , pp. 379-398
    • Sarai, A.1    Kono, H.2
  • 27
    • 4143064791 scopus 로고    scopus 로고
    • Moment-based prediction of DNA-binding proteins
    • Ahmad S, Sarai A (2004) Moment-based prediction of DNA-binding proteins. J Mol Biol 341: 65-71.
    • (2004) J Mol Biol , vol.341 , pp. 65-71
    • Ahmad, S.1    Sarai, A.2
  • 28
    • 29144504328 scopus 로고    scopus 로고
    • Kernel-based machine learning protocol for predicting DNA-binding proteins
    • Bhardwaj N, Langlois RE, Zhao GJ, Lu H (2005) Kernel-based machine learning protocol for predicting DNA-binding proteins. Nucleic Acids Res 33: 6486-6493.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6486-6493
    • Bhardwaj, N.1    Langlois, R.E.2    Zhao, G.J.3    Lu, H.4
  • 29
    • 4444343959 scopus 로고    scopus 로고
    • Identifying DNA-binding proteins using structural motifs and the electrostatic potential
    • Shanahan HP, Garcia MA, Jones S, Thornton JM (2004) Identifying DNA-binding proteins using structural motifs and the electrostatic potential. Nucleic Acids Res 32: 4732-4741.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4732-4741
    • Shanahan, H.P.1    Garcia, M.A.2    Jones, S.3    Thornton, J.M.4
  • 30
    • 0037470573 scopus 로고    scopus 로고
    • Annotating nucleic acid-binding function based on protein structure
    • Stawiski EW, Gregoret LM, Mandel-Gutfreund Y (2003) Annotating nucleic acid-binding function based on protein structure. J Mol Biol 326: 1065-1079.
    • (2003) J Mol Biol , vol.326 , pp. 1065-1079
    • Stawiski, E.W.1    Gregoret, L.M.2    Mandel-Gutfreund, Y.3
  • 31
    • 33646067733 scopus 로고    scopus 로고
    • Efficient prediction of nucleic acid binding function from low-resolution protein structures
    • Szilagyi A, Skolnick J (2006) Efficient prediction of nucleic acid binding function from low-resolution protein structures. J Mol Biol 358: 922-933.
    • (2006) J Mol Biol , vol.358 , pp. 922-933
    • Szilagyi, A.1    Skolnick, J.2
  • 32
    • 25444524842 scopus 로고    scopus 로고
    • PSSM-based prediction of DNA binding sites in proteins
    • Ahmad S, Sarai A (2005) PSSM-based prediction of DNA binding sites in proteins. BMC Bioinformatics 6.
    • (2005) BMC Bioinformatics , vol.6
    • Ahmad, S.1    Sarai, A.2
  • 33
    • 33744817325 scopus 로고    scopus 로고
    • Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins. Proteins: Struct Funct
    • Kuznetsov IB, Gou ZK, Li R, Hwang SW (2006) Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins. Proteins: Struct Funct Bioinform 64: 19-27.
    • (2006) Bioinform , vol.64 , pp. 19-27
    • Kuznetsov, I.B.1    Gou, Z.K.2    Li, R.3    Hwang, S.W.4
  • 34
    • 34547852238 scopus 로고    scopus 로고
    • Prediction of DNA-binding residues from sequence
    • Ofran Y, Mysore V, Rost B (2007) Prediction of DNA-binding residues from sequence. Bioinformatics 23: I347-I353.
    • (2007) Bioinformatics , vol.23
    • Ofran, Y.1    Mysore, V.2    Rost, B.3
  • 35
    • 33846803179 scopus 로고    scopus 로고
    • DISPLAR: An accurate method for predicting DNA-binding sites on protein surfaces
    • Tjong H, Zhou HX (2007) DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces. Nucleic Acids Res 35: 1465-1477.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1465-1477
    • Tjong, H.1    Zhou, H.X.2
  • 37
    • 66249112873 scopus 로고    scopus 로고
    • Gao M, Skolnick J (2009) From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions. PLoS Comput Biol 5: e1000341.
    • Gao M, Skolnick J (2009) From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions. PLoS Comput Biol 5: e1000341.
  • 39
    • 0038817799 scopus 로고    scopus 로고
    • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: Application to the Saccharomyces cerevisiae proteome
    • Lu L, Arakaki AK, Lu H, Skolnick J (2003) Multimeric threading-based prediction of protein-protein interactions on a genomic scale: Application to the Saccharomyces cerevisiae proteome. Genome Res 13: 1146-1154.
    • (2003) Genome Res , vol.13 , pp. 1146-1154
    • Lu, L.1    Arakaki, A.K.2    Lu, H.3    Skolnick, J.4
  • 40
    • 38349100452 scopus 로고    scopus 로고
    • A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
    • Brylinski M, Skolnick J (2008) A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation. Proc Natl Acad Sci USA 105: 129-134.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 129-134
    • Brylinski, M.1    Skolnick, J.2
  • 41
    • 3142764482 scopus 로고    scopus 로고
    • Development and large scale benchmark testing of the PROSPECTOR-3 threading algorithm. Proteins: Struct Funct
    • Skolnick J, Kihara D, Zhang Y (2004) Development and large scale benchmark testing of the PROSPECTOR-3 threading algorithm. Proteins: Struct Funct Bioinform 56: 502-518.
    • (2004) Bioinform , vol.56 , pp. 502-518
    • Skolnick, J.1    Kihara, D.2    Zhang, Y.3
  • 42
    • 0016772212 scopus 로고
    • Comparison of predicted and observed secondary structure of T4 phage lysozyme
    • Matthews BW (1975) Comparison of predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 405: 442-451.
    • (1975) Biochim Biophys Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 43
    • 0028961335 scopus 로고
    • SCOP - A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP - A structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247: 536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 44
    • 0036583638 scopus 로고    scopus 로고
    • Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator
    • Blanco AG, Sola M, Gomis-Ruth FX, Coll M (2002) Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure 10: 701-713.
    • (2002) Structure , vol.10 , pp. 701-713
    • Blanco, A.G.1    Sola, M.2    Gomis-Ruth, F.X.3    Coll, M.4
  • 45
    • 0033546005 scopus 로고    scopus 로고
    • Crystal structure of the Z alpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA
    • Schwartz T, Rould MA, Lowenhaupt K, Herbert A, Rich A (1999) Crystal structure of the Z alpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA. Science 284: 1841-1845.
    • (1999) Science , vol.284 , pp. 1841-1845
    • Schwartz, T.1    Rould, M.A.2    Lowenhaupt, K.3    Herbert, A.4    Rich, A.5
  • 46
    • 59649116717 scopus 로고    scopus 로고
    • The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ(ADAR1)
    • Ha SC, Choi J, Hwang HY, Rich A, Kim YG, et al. (2009) The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ(ADAR1). Nucleic Acids Res 37: 629-637.
    • (2009) Nucleic Acids Res , vol.37 , pp. 629-637
    • Ha, S.C.1    Choi, J.2    Hwang, H.Y.3    Rich, A.4    Kim, Y.G.5
  • 47
    • 65849303734 scopus 로고    scopus 로고
    • Human genomic Z-DNA segments probed by the Z domain of ADAR1
    • Li H, Xiao J, Li JM, Lu L, Feng S, et al. (2009) Human genomic Z-DNA segments probed by the Z domain of ADAR1. Nucleic Acids Res 37: 2737-2746.
    • (2009) Nucleic Acids Res , vol.37 , pp. 2737-2746
    • Li, H.1    Xiao, J.2    Li, J.M.3    Lu, L.4    Feng, S.5
  • 48
    • 44449157593 scopus 로고    scopus 로고
    • Regulation of innate immune responses by DAI (DLM-1/ZBP1) and other DNA-sensing molecules
    • Wang ZC, Choi MK, Ban T, Yanai H, Negishi H, et al. (2008) Regulation of innate immune responses by DAI (DLM-1/ZBP1) and other DNA-sensing molecules. Proc Natl Acad Sci USA 105: 5477-5482.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 5477-5482
    • Wang, Z.C.1    Choi, M.K.2    Ban, T.3    Yanai, H.4    Negishi, H.5
  • 50
    • 33645984577 scopus 로고    scopus 로고
    • Magnesium-induced assembly of a complete DNA polymerase catalytic complex
    • Batra VK, Beard WA, Shock DD, Krahn JM, Pedersen LC, et al. (2006) Magnesium-induced assembly of a complete DNA polymerase catalytic complex. Structure 14: 757-766.
    • (2006) Structure , vol.14 , pp. 757-766
    • Batra, V.K.1    Beard, W.A.2    Shock, D.D.3    Krahn, J.M.4    Pedersen, L.C.5
  • 51
    • 16344394253 scopus 로고    scopus 로고
    • Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition
    • Newman M, Murray-Rust J, Lally J, Rudolf J, Fadden A, et al. (2005) Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition. EMBO J 24: 895-905.
    • (2005) EMBO J , vol.24 , pp. 895-905
    • Newman, M.1    Murray-Rust, J.2    Lally, J.3    Rudolf, J.4    Fadden, A.5
  • 54
    • 0037087587 scopus 로고    scopus 로고
    • The origin recognition complex: From simple origins to complex functions
    • Bell SP (2002) The origin recognition complex: from simple origins to complex functions. Genes Dev 16: 659-672.
    • (2002) Genes Dev , vol.16 , pp. 659-672
    • Bell, S.P.1
  • 55
    • 34147221454 scopus 로고    scopus 로고
    • Role of the Orc6 protein in origin recognition complex-dependent DNA binding and replication in Drosophila melanogaster
    • Balasov M, Huijbregts RPH, Chesnokov I (2007) Role of the Orc6 protein in origin recognition complex-dependent DNA binding and replication in Drosophila melanogaster. Mol Cell Biol 27: 3143-3153.
    • (2007) Mol Cell Biol , vol.27 , pp. 3143-3153
    • Balasov, M.1    Huijbregts, R.P.H.2    Chesnokov, I.3
  • 56
    • 0042125189 scopus 로고    scopus 로고
    • Sequence-independent DNA binding and replication initiation by the human origin recognition complex
    • Vashee S, Cvetic C, Lu WY, Simancek P, Kelly TJ, et al. (2003) Sequence-independent DNA binding and replication initiation by the human origin recognition complex. Genes Dev 17: 1894-1908.
    • (2003) Genes Dev , vol.17 , pp. 1894-1908
    • Vashee, S.1    Cvetic, C.2    Lu, W.Y.3    Simancek, P.4    Kelly, T.J.5
  • 57
    • 0042424846 scopus 로고    scopus 로고
    • A cytokinetic function of Drosophila ORC6 protein resides in-a domain distinct from its replication activity
    • Chesnokov IN, Chesnokova ON, Botchan M (2003) A cytokinetic function of Drosophila ORC6 protein resides in-a domain distinct from its replication activity. Proc Natl Acad Sci USA 100: 9150-9155.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9150-9155
    • Chesnokov, I.N.1    Chesnokova, O.N.2    Botchan, M.3
  • 59
    • 29144456767 scopus 로고    scopus 로고
    • Barrier-to- autointegration factor-like (BAF-L): A proposed regulator of BAF
    • Tifft KE, Segura-Totten M, Lee KK, Wilson KL (2006) Barrier-to- autointegration factor-like (BAF-L): A proposed regulator of BAF. Exp Cell Res 312: 478-487.
    • (2006) Exp Cell Res , vol.312 , pp. 478-487
    • Tifft, K.E.1    Segura-Totten, M.2    Lee, K.K.3    Wilson, K.L.4
  • 60
    • 44849089416 scopus 로고    scopus 로고
    • Keep your fingers off my DNA: Protein-protein interactions mediated by C2H2 zinc finger domains
    • Brayer KJ, Segal DJ (2008) Keep your fingers off my DNA: Protein-protein interactions mediated by C2H2 zinc finger domains. Cell Biochem Biophys 50: 111-131.
    • (2008) Cell Biochem Biophys , vol.50 , pp. 111-131
    • Brayer, K.J.1    Segal, D.J.2
  • 63
    • 0031741736 scopus 로고    scopus 로고
    • Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz
    • Tsai RYL, Reed RR (1998) Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz. Mol Cell Biol 18: 6447-6456.
    • (1998) Mol Cell Biol , vol.18 , pp. 6447-6456
    • Tsai, R.Y.L.1    Reed, R.R.2
  • 64
    • 0030981019 scopus 로고    scopus 로고
    • Cloning and functional characterization of Roaz, a zinc finger protein that interacts with O/E-1 to regulate gene expression: Implications for olfactory neuronal development
    • Tsai RYL, Reed RR (1997) Cloning and functional characterization of Roaz, a zinc finger protein that interacts with O/E-1 to regulate gene expression: Implications for olfactory neuronal development. J Neurosci 17: 4159-4169.
    • (1997) J Neurosci , vol.17 , pp. 4159-4169
    • Tsai, R.Y.L.1    Reed, R.R.2
  • 65
    • 0034695506 scopus 로고    scopus 로고
    • OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMP-Smad and Olf signaling pathways
    • Hata A, Seoane J, Lagna G, Montalvo E, Hemmati-Brivanlou A, et al. (2000) OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMP-Smad and Olf signaling pathways. Cell 100: 229-240.
    • (2000) Cell , vol.100 , pp. 229-240
    • Hata, A.1    Seoane, J.2    Lagna, G.3    Montalvo, E.4    Hemmati-Brivanlou, A.5
  • 66
    • 34247619229 scopus 로고    scopus 로고
    • DDOMAIN: Dividing structures into domains using a normalized domain-domain interaction profile
    • Zhou HY, Xue B, Zhou YQ (2007) DDOMAIN: Dividing structures into domains using a normalized domain-domain interaction profile. Protein Sci 16: 947-955.
    • (2007) Protein Sci , vol.16 , pp. 947-955
    • Zhou, H.Y.1    Xue, B.2    Zhou, Y.Q.3
  • 67
    • 0023984847 scopus 로고
    • Optimal alignments in linear space
    • Myers EW, Miller W (1988) Optimal alignments in linear space. Comput Appl Biosci 4: 11-17.
    • (1988) Comput Appl Biosci , vol.4 , pp. 11-17
    • Myers, E.W.1    Miller, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.