메뉴 건너뛰기




Volumn 37, Issue 8, 2009, Pages 2737-2746

Human genomic Z-DNA segments probed by the Zα domain of ADAR1

Author keywords

[No Author keywords available]

Indexed keywords

DNA Z; RIBONUCLEASE; RNA EDITING ENZYME ADAR1; UNCLASSIFIED DRUG;

EID: 65849303734     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp124     Document Type: Article
Times cited : (58)

References (40)
  • 2
    • 0037803571 scopus 로고    scopus 로고
    • Timeline: Z-DNA: the long road to biological function
    • RTch,A. and Zhang,S. (2003) Timeline: Z-DNA: the long road to biological function. Nat. Rev. Genet., 4, 566-572.
    • (2003) Nat. Rev. Genet , vol.4 , pp. 566-572
    • RTch, A.1    Zhang, S.2
  • 3
    • 0028371248 scopus 로고
    • Protein tracking-induced supercoiling of DNA: A tool to regulate DNA transactions in vivo?
    • Droge,P. (1994) Protein tracking-induced supercoiling of DNA: A tool to regulate DNA transactions in vivo? Bioessays, 16, 91-99.
    • (1994) Bioessays , vol.16 , pp. 91-99
    • Droge, P.1
  • 6
    • 0037168537 scopus 로고    scopus 로고
    • Z-DNA-binding proteins can act as potent effectors of gene expression in vivo
    • Oh,D.B., Kim,Y.G. and Rich,A. (2002) Z-DNA-binding proteins can act as potent effectors of gene expression in vivo. Proc. Natl Acad. Sci. USA, 99, 16666-16671.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 16666-16671
    • Oh, D.B.1    Kim, Y.G.2    Rich, A.3
  • 7
    • 0035979178 scopus 로고    scopus 로고
    • A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity
    • Rothenburg,S., Koch-Nolte,F., Rich,A. and Haag,F. (2001) A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity. Proc. Natl Acad. Sci. USA, 98, 8985-8990.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8985-8990
    • Rothenburg, S.1    Koch-Nolte, F.2    Rich, A.3    Haag, F.4
  • 8
    • 33847787053 scopus 로고    scopus 로고
    • Characterization of Z-DNA as a nucleosome-boundary element in yeast Saccharomyces cerevisiae
    • Wong,B., Chen,S., Kwon,J.A. and Rich,A. (2007) Characterization of Z-DNA as a nucleosome-boundary element in yeast Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 104, 2229-2234.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 2229-2234
    • Wong, B.1    Chen, S.2    Kwon, J.A.3    Rich, A.4
  • 9
    • 0023645233 scopus 로고
    • Effect of Z-DNA on nucleosome placement
    • Garner,M.M. and Felsenfeld,G. (1987) Effect of Z-DNA on nucleosome placement. J. Mol. Biol., 196, 581-590.
    • (1987) J. Mol. Biol , vol.196 , pp. 581-590
    • Garner, M.M.1    Felsenfeld, G.2
  • 10
    • 33645228949 scopus 로고    scopus 로고
    • Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling
    • Liu,H., Mulholland,N., Fu,H. and Zhao,K. (2006) Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. Mol. Cell Biol., 26, 2550-2559.
    • (2006) Mol. Cell Biol , vol.26 , pp. 2550-2559
    • Liu, H.1    Mulholland, N.2    Fu, H.3    Zhao, K.4
  • 11
    • 33744944261 scopus 로고    scopus 로고
    • Non-B DNA structure-induced genetic instability
    • Wang,G. and Vasquez,K.M. (2006) Non-B DNA structure-induced genetic instability. Mutat. Res., 598, 103-119.
    • (2006) Mutat. Res , vol.598 , pp. 103-119
    • Wang, G.1    Vasquez, K.M.2
  • 12
    • 33644543741 scopus 로고    scopus 로고
    • Z-DNA-forming sequences generate large-scale deletions in mammalian cells
    • Wang,G., Christensen,L.A. and Vasquez,K.M. (2006) Z-DNA-forming sequences generate large-scale deletions in mammalian cells. Proc. Natl Acad. Sci. USA, 103, 2677-2682.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 2677-2682
    • Wang, G.1    Christensen, L.A.2    Vasquez, K.M.3
  • 13
    • 0026752148 scopus 로고
    • Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes
    • Schroth,G.P., Chou,P.J. and Ho,P.S. (1992) Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. J. Biol. Chem., 267, 11846-11855.
    • (1992) J. Biol. Chem , vol.267 , pp. 11846-11855
    • Schroth, G.P.1    Chou, P.J.2    Ho, P.S.3
  • 14
    • 13544272030 scopus 로고    scopus 로고
    • Distributions of Z-DNA and nuclear factor I in human chromosome 22: A model for coupled transcriptional regulation
    • Champ,P.C., Maurice,S., Vargason,J.M., Camp,T. and Ho,P.S. (2004) Distributions of Z-DNA and nuclear factor I in human chromosome 22: A model for coupled transcriptional regulation. Nucleic Acids Res., 32, 6501-6510.
    • (2004) Nucleic Acids Res , vol.32 , pp. 6501-6510
    • Champ, P.C.1    Maurice, S.2    Vargason, J.M.3    Camp, T.4    Ho, P.S.5
  • 15
    • 36749066725 scopus 로고    scopus 로고
    • Phylogenomic analysis of the emergence of GC-rich transcription elements
    • Khuu,P., Sandor,M., DeYoung,J. and Ho,P.S. (2007) Phylogenomic analysis of the emergence of GC-rich transcription elements. Proc. Natl Acad. Sci. USA, 104, 16528-16533.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 16528-16533
    • Khuu, P.1    Sandor, M.2    DeYoung, J.3    Ho, P.S.4
  • 16
    • 0033546005 scopus 로고    scopus 로고
    • Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA
    • Schwartz,T., Rould,M.A., Lowenhaupt,K., Herbert,A. and Rich,A. (1999) Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA. Science, 284, 1841-1845.
    • (1999) Science , vol.284 , pp. 1841-1845
    • Schwartz, T.1    Rould, M.A.2    Lowenhaupt, K.3    Herbert, A.4    Rich, A.5
  • 18
    • 0025849174 scopus 로고
    • Cloning of the cDNA and gene of mouse mast cell protease-6. Transcription by progenitor mast cells and mast cells of the connective tissue subclass
    • Reynolds,D.S., Gurley,D.S., Austen,K.F. and Serafin,W.E. (1991) Cloning of the cDNA and gene of mouse mast cell protease-6. Transcription by progenitor mast cells and mast cells of the connective tissue subclass. J. Biol. Chem., 266, 3847-3853.
    • (1991) J. Biol. Chem , vol.266 , pp. 3847-3853
    • Reynolds, D.S.1    Gurley, D.S.2    Austen, K.F.3    Serafin, W.E.4
  • 20
    • 0030028981 scopus 로고    scopus 로고
    • Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro
    • Wang,Z. and Droge,P. (1996) Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro. EMBO J., 15, 581-589.
    • (1996) EMBO J , vol.15 , pp. 581-589
    • Wang, Z.1    Droge, P.2
  • 21
    • 38849132828 scopus 로고    scopus 로고
    • The functional response of upstream DNA to dynamic supercoiling in vivo
    • Kouzine,F., Sanford,S., Elisha-Feil,Z. and Levens,D. (2008) The functional response of upstream DNA to dynamic supercoiling in vivo. Nat. Struct. Mol. Biol., 15, 146-154.
    • (2008) Nat. Struct. Mol. Biol , vol.15 , pp. 146-154
    • Kouzine, F.1    Sanford, S.2    Elisha-Feil, Z.3    Levens, D.4
  • 22
    • 0023650858 scopus 로고
    • The flexibility and topology of simian virus 40 DNA in minichromosomes
    • Ambrose,C., McLaughlin,R. and Bina,M. (1987) The flexibility and topology of simian virus 40 DNA in minichromosomes. Nucleic Acids Res., 15, 3703-3721.
    • (1987) Nucleic Acids Res , vol.15 , pp. 3703-3721
    • Ambrose, C.1    McLaughlin, R.2    Bina, M.3
  • 23
    • 0035838992 scopus 로고    scopus 로고
    • Regulation of CSF1 promoter by the SWI/SNF-like BAF complex
    • Liu,R., Liu,H., Chen,X., Kirby,M., Brown,P.O. and Zhao,K. (2001) Regulation of CSF1 promoter by the SWI/SNF-like BAF complex. Cell, 106, 309-318.
    • (2001) Cell , vol.106 , pp. 309-318
    • Liu, R.1    Liu, H.2    Chen, X.3    Kirby, M.4    Brown, P.O.5    Zhao, K.6
  • 24
    • 0030844581 scopus 로고    scopus 로고
    • A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase
    • Herbert,A., Alfken,J., Kim,Y.G., Mian,I.S., Nishikura,K. and Rich,A. (1997) A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase. Proc. Natl Acad. Sci. USA 94, 8421-8426.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 8421-8426
    • Herbert, A.1    Alfken, J.2    Kim, Y.G.3    Mian, I.S.4    Nishikura, K.5    Rich, A.6
  • 25
    • 0033555682 scopus 로고    scopus 로고
    • Structure-function analysis of the Z-DNA-binding domain Zalpha of dsRNA adenosine deaminase type I reveals similarity to the (alpha + beta) family of helix-turn-helix proteins
    • Schade,M., Turner,C.J., Lowenhaupt,K., Rich,A. and Herbert,A. (1999) Structure-function analysis of the Z-DNA-binding domain Zalpha of dsRNA adenosine deaminase type I reveals similarity to the (alpha + beta) family of helix-turn-helix proteins. EMBO J., 18, 470-479.
    • (1999) EMBO J , vol.18 , pp. 470-479
    • Schade, M.1    Turner, C.J.2    Lowenhaupt, K.3    Rich, A.4    Herbert, A.5
  • 26
    • 0026468045 scopus 로고
    • Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene
    • Wittig,B., Wolfl,S., Dorbic,T., Vahrson,W. and Rich,A. (1992) Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene. EMBO J., 11, 4653-4663.
    • (1992) EMBO J , vol.11 , pp. 4653-4663
    • Wittig, B.1    Wolfl, S.2    Dorbic, T.3    Vahrson, W.4    Rich, A.5
  • 27
    • 0020022917 scopus 로고
    • The three-dimensional structure of DNA
    • Zimmerman,S.B. (1982) The three-dimensional structure of DNA. Annu. Rev. Biochem., 51, 395-427.
    • (1982) Annu. Rev. Biochem , vol.51 , pp. 395-427
    • Zimmerman, S.B.1
  • 28
    • 27144542066 scopus 로고    scopus 로고
    • Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases
    • Ha,S.C., Lowenhaupt,K., Rich,A., Kim,Y.G. and Kim,K.K. (2005) Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. Nature, 437, 1183-1186.
    • (2005) Nature , vol.437 , pp. 1183-1186
    • Ha, S.C.1    Lowenhaupt, K.2    Rich, A.3    Kim, Y.G.4    Kim, K.K.5
  • 29
    • 0030695434 scopus 로고    scopus 로고
    • Construction of a Z-DNA-specific restriction endonuclease
    • Kim,Y.G., Kim,P.S., Herbert,A. and Rich,A. (1997) Construction of a Z-DNA-specific restriction endonuclease. Proc. Natl Acad. Sci. USA 94, 12875-12879.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12875-12879
    • Kim, Y.G.1    Kim, P.S.2    Herbert, A.3    Rich, A.4
  • 30
    • 0029915187 scopus 로고    scopus 로고
    • Transcription of the human corticotropin-releasing hormone gene in NPLC cells is correlated with Z-DNA formation
    • Wolfl,S., Martinez,C., Rich,A. and Majzoub,J.A. (1996) Transcription of the human corticotropin-releasing hormone gene in NPLC cells is correlated with Z-DNA formation. Proc. Natl Acad. Sci. USA, 93 3664-3668.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 3664-3668
    • Wolfl, S.1    Martinez, C.2    Rich, A.3    Majzoub, J.A.4
  • 32
    • 0028838069 scopus 로고
    • A novel cis-acting centromeric DNA element affects S. pombe centromeric chromatin structure at a distance
    • Marschall,L.G. and Clarke,L. (1995) A novel cis-acting centromeric DNA element affects S. pombe centromeric chromatin structure at a distance. J. Cell Biol., 128, 445-454.
    • (1995) J. Cell Biol , vol.128 , pp. 445-454
    • Marschall, L.G.1    Clarke, L.2
  • 33
  • 34
    • 0037810434 scopus 로고    scopus 로고
    • A rapid method of genomic array analysis of scaffold/matrix attachment regions (S/MARs) identifies a 2.5-Mb region of enhanced scaffold/matrix attachment at a human neocentromere
    • Sumer,H., Craig,J.M., Sibson,M. and Choo,K.H. (2003) A rapid method of genomic array analysis of scaffold/matrix attachment regions (S/MARs) identifies a 2.5-Mb region of enhanced scaffold/matrix attachment at a human neocentromere. Genome Res., 13, 1737-1743.
    • (2003) Genome Res , vol.13 , pp. 1737-1743
    • Sumer, H.1    Craig, J.M.2    Sibson, M.3    Choo, K.H.4
  • 35
    • 0034574442 scopus 로고    scopus 로고
    • Mapping of a human centromere onto the DNA by topoisomerase II cleavage
    • Floridia,G., Zatterale,A., Zuffardi,O. and Tyler-Smith,C. (2000) Mapping of a human centromere onto the DNA by topoisomerase II cleavage. EMBO Rep., 1, 489-493.
    • (2000) EMBO Rep , vol.1 , pp. 489-493
    • Floridia, G.1    Zatterale, A.2    Zuffardi, O.3    Tyler-Smith, C.4
  • 36
    • 0035839066 scopus 로고    scopus 로고
    • The centromere paradox: Stable inheritance with rapidly evolving DNA
    • Henikoff,S., Ahmad,K. and Malik,H.S. (2001) The centromere paradox: stable inheritance with rapidly evolving DNA. Science, 293, 1098-1102.
    • (2001) Science , vol.293 , pp. 1098-1102
    • Henikoff, S.1    Ahmad, K.2    Malik, H.S.3
  • 37
    • 0025057566 scopus 로고
    • The Z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture
    • Wahls,W.P., Wallace,L.J. and Moore,P.D. (1990) The Z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture. Mol. Cell Biol., 10, 785-793.
    • (1990) Mol. Cell Biol , vol.10 , pp. 785-793
    • Wahls, W.P.1    Wallace, L.J.2    Moore, P.D.3
  • 39
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth,B., Sniegowski,P. and Stephan,W. (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature, 371, 215-220.
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 40
    • 0035432975 scopus 로고    scopus 로고
    • Determining centromere identity: Cyclical stories and forking paths
    • Sullivan,B.A., Blower,M.D. and Karpen,G.H. (2001) Determining centromere identity: Cyclical stories and forking paths. Nat. Rev. Genet., 2, 584-596.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 584-596
    • Sullivan, B.A.1    Blower, M.D.2    Karpen, G.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.