-
1
-
-
11144341956
-
Chemical space and biology
-
Dobson, C.M. Chemical space and biology. Nature 2004, 432, 824-828
-
(2004)
Nature
, vol.432
, pp. 824-828
-
-
Dobson, C.M.1
-
2
-
-
33746156959
-
Global mapping of pharmacological space
-
Paolini, G.V.; Shapland, R.H.; van Hoorn, W.P.; Mason, J.S.; Hopkins, A.L. Global mapping of pharmacological space. Nat. Biotechnol. 2006, 24, 805-815
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 805-815
-
-
Paolini, G.V.1
Shapland, R.H.2
Van Hoorn, W.P.3
Mason, J.S.4
Hopkins, A.L.5
-
3
-
-
33751547539
-
How many drug targets are there?
-
DOI 10.1038/nrd2199, PII NRD2199
-
Overington, J.P.; Al-Lazikani, B.; Hopkins, A.L. How many drug targets are there? Nat. Rev. Drug Discov. 2006, 5, 993-996 (Pubitemid 44835126)
-
(2006)
Nature Reviews Drug Discovery
, vol.5
, Issue.12
, pp. 993-996
-
-
Overington, J.P.1
Al-Lazikani, B.2
Hopkins, A.L.3
-
4
-
-
33646487174
-
Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds
-
Sadreyev, R.I.; Grishin, N.V. Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds. BMC Struct. Biol. 2006, 6, 6.
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 6
-
-
Sadreyev, R.I.1
Grishin, N.V.2
-
5
-
-
47049121577
-
How large does a compound screening collection need to be?
-
Lipkin, M.J.; Stevens, A.P.; Livingstone, D.J.; Harris C.J. How large does a compound screening collection need to be? Comb. Chem. High Throughput Screen. 2008, 11, 482-493
-
(2008)
Comb. Chem. High Throughput Screen.
, vol.11
, pp. 482-493
-
-
Lipkin, M.J.1
Stevens, A.P.2
Livingstone, D.J.3
Harris, C.J.4
-
6
-
-
1842532337
-
Chemogenomics: An emerging strategy for rapid target and drug discovery
-
DOI 10.1038/nrg1317
-
Bredel, M; Jacoby, E. Chemogenomics: an emerging strategy for rapid target and drug discovery. Nat. Rev. Genet. 2004, 5, 262-275 (Pubitemid 38435622)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.4
, pp. 262-275
-
-
Bredel, M.1
Jacoby, E.2
-
7
-
-
19944422452
-
Key aspects of the Novartis compound collection enhancement project for the compilation of a comprehensive chemogenomics drug discovery screening collection
-
Jacoby, E.; Schuffenhauer, A.; Popov, M.; Azzaoui, K.; Havill, B.; Schopfer, U.; Engeloch, C.; Stanek, J.; Acklin, P.; Rigollier, P.; Stoll, F.; Koch, G.; Meier, P.; Orain, D.; Giger, R.; Hinrichs, J.; Malagu, K.; Zimmermann, J.; Roth, H.J. Key aspects of the Novartis compound collection enhancement project for the compilation of a comprehensive chemogenomics drug discovery screening collection. Curr. Top. Med. Chem. 2005, 5, 397-411.
-
(2005)
Curr. Top. Med. Chem.
, vol.5
, pp. 397-411
-
-
Jacoby, E.1
Schuffenhauer, A.2
Popov, M.3
Azzaoui, K.4
Havill, B.5
Schopfer, U.6
Engeloch, C.7
Stanek, J.8
Acklin, P.9
Rigollier, P.10
Stoll, F.11
Koch, G.12
Meier, P.13
Orain, D.14
Giger, R.15
Hinrichs, J.16
Malagu, K.17
Zimmermann, J.18
Roth, H.J.19
-
8
-
-
84967387077
-
Small molecules for chemogenomics-based drug discovery
-
Jacoby, E., Ed. Imperial College Press, London
-
Jacoby, E.; Schuffenhauer, A.; Azzaoui, K.; Popov, M.; Dressler, S.; Glick, M.; Jenkins, J.; Davies, J.; Roggo, S. Small molecules for chemogenomics-based drug discovery. In Chemogenomics - Knowledge-based Approaches to Drug Discovery; Jacoby, E., Ed. Imperial College Press, London, 2006; pp.1-38.
-
(2006)
Chemogenomics - Knowledge-based Approaches to Drug Discovery
, pp. 1-38
-
-
Jacoby, E.1
Schuffenhauer, A.2
Azzaoui, K.3
Popov, M.4
Dressler, S.5
Glick, M.6
Jenkins, J.7
Davies, J.8
Roggo, S.9
-
9
-
-
0032563315
-
Exploiting chemical libraries, structure, and genomics in the search for kinase inhibitors
-
Gray, N.S.; Wodicka, L.; Thunnissen, A.M.; Norman, T.C.; Kwon, S.; Espinoza, F.H.; Morgan, D.O.; Barnes, G.; LeClerc, S.; Meijer, L.; Kim, S.H.; Lockhart, D.J.; Schultz, P.G. Exploiting chemical libraries, structure, and genomics in the search for kinase inhibitors. Science 1998, 281, 533-538
-
(1998)
Science
, vol.281
, pp. 533-538
-
-
Gray, N.S.1
Wodicka, L.2
Thunnissen, A.M.3
Norman, T.C.4
Kwon, S.5
Espinoza, F.H.6
Morgan, D.O.7
Barnes, G.8
Leclerc, S.9
Meijer, L.10
Kim, S.H.11
Lockhart, D.J.12
Schultz, P.G.13
-
10
-
-
0343339895
-
A three binding site hypothesis for the interaction of ligands with monoamine G protein-coupled receptors: Implications for combinatorial ligand design
-
Jacoby, E.; Fauchere, J.L.; Raimbaud, E.; Ollivier, S.; Michel, A.; Spedding, M. A three binding site hypothesis for the interaction of ligands with monoamine G protein-coupled receptors: implications for combinatorial ligand design. Quant. Struct.-Act. Relat. 1999, 18, 561-572 (Pubitemid 30018846)
-
(1999)
Quantitative Structure-Activity Relationships
, vol.18
, Issue.6
, pp. 561-572
-
-
Jacoby, E.1
Fauchere, J.-L.2
Raimbaud, E.3
Ollivier, S.4
Michel, A.5
Spedding, M.6
-
11
-
-
70450198030
-
Strategies for the design of pGPCR-targeted libraries
-
Rognan, D., Ed. Wiley-VCH, Weinheim
-
Savchuk, N.P.; Tkachenko, S.E.; Balakin, K.V. Strategies for the design of pGPCR-targeted libraries. In Methods and Principles in Medicinal Chemistry (2006), 30 (Ligand Design for G Protein- Coupled Receptors); Rognan, D., Ed. Wiley-VCH, Weinheim, 2006; pp. 137-64.
-
(2006)
Methods and Principles in Medicinal Chemistry (2006), 30 (Ligand Design for G Protein- Coupled Receptors)
, pp. 137-164
-
-
Savchuk, N.P.1
Tkachenko, S.E.2
Balakin, K.V.3
-
12
-
-
84954238063
-
A chemical genomics approach for ion channel modulators
-
Kubinyi, H.; Müller, G., Eds. Wiley-VCH, Weinheim
-
Baringhaus, K.H.; Hessler, G. A chemical genomics approach for ion channel modulators. In Methods and Principles in Medicinal Chemistry (2004), 22 (Chemogenomics in Drug Discovery). Kubinyi, H.; Müller, G., Eds. Wiley-VCH, Weinheim, 2004; pp. 221-242
-
(2004)
Methods and Principles in Medicinal Chemistry (2004), 22 (Chemogenomics in Drug Discovery)
, pp. 221-242
-
-
Baringhaus, K.H.1
Hessler, G.2
-
13
-
-
33748751182
-
Chemogenomics: Structuring the drug discovery process to gene families
-
Harris, C.J.; Stevens, A.P. Chemogenomics: structuring the drug discovery process to gene families. Drug Discov. Today. 2006, 11, 880-888
-
(2006)
Drug Discov. Today.
, vol.11
, pp. 880-888
-
-
Harris, C.J.1
Stevens, A.P.2
-
14
-
-
33846899405
-
Molecular recognition of protein kinase binding pockets for design of potent and selective kinase inhibitors
-
Liao, J.J. Molecular recognition of protein kinase binding pockets for design of potent and selective kinase inhibitors. J. Med. Chem. 2007, 50, 409-424
-
(2007)
J. Med. Chem.
, vol.50
, pp. 409-424
-
-
Liao, J.J.1
-
15
-
-
34447552641
-
Enhanced hit-to-lead process using bioanalogous lead evolution and chemogenomics: Application in designing selective matrix metalloprotease inhibitors
-
DOI 10.1517/17460441.2.5.707
-
Papp, A.; Szommer, T.; Barna, L.; Gyimesi, G.; Ferdinandy, P.; Spadoni, C.; Darvas, F.; Fujita, T.; Urge, L.; Dorman, G. Enhanced hit-to-lead process using bioanalogous lead evolution and chemogenomics: application in designing selective matrix metalloprotease inhibitors. Expert Opin. Drug Discov. 2007, 2, 707-723 (Pubitemid 47064964)
-
(2007)
Expert Opinion on Drug Discovery
, vol.2
, Issue.5
, pp. 707-723
-
-
Papp, A.1
Szommer, T.2
Barna, L.3
Gyimesi, G.4
Ferdinandy, P.5
Spadoni, C.6
Darvas, F.7
Fujita, T.8
Urge, L.9
Dorman, G.10
-
16
-
-
70450217959
-
Protease-Directed Drug Discovery
-
Lackey, K., Ed; Wiley&Sons: New-York
-
Sedrani, R.; Hommel, U.; Eder, J. Protease-Directed Drug Discovery. In Gene Family Targeted Molecular Design; Lackey, K., Ed; Wiley&Sons: New-York, 2008; pp.159-198
-
(2008)
Gene Family Targeted Molecular Design
, pp. 159-198
-
-
Sedrani, R.1
Hommel, U.2
Eder, J.3
-
17
-
-
84891282346
-
The nuclear receptor superfamily and drug discovery
-
Schreiber, S.L.; Kapoor, T.M.; Wess, G., Eds. Wiley-VCH, Weinheim
-
Moore, J.T.; Collins, J.L.; Pearce, K.H. The nuclear receptor superfamily and drug discovery. In Chemical Biology - From Small Molecules to Systems Biology and Drug Design. Schreiber, S.L.; Kapoor, T.M.; Wess, G., Eds. Wiley-VCH, Weinheim, 2007; pp. 891-932.
-
(2007)
Chemical Biology - from Small Molecules to Systems Biology and Drug Design
, pp. 891-932
-
-
Moore, J.T.1
Collins, J.L.2
Pearce, K.H.3
-
18
-
-
2442647742
-
BREED: Generating novel inhibitors through hybridization of known ligands. Application to CDK2, p38, and HIV protease
-
Pierce, A.C.; Rao, G.; Bemis, G.W. BREED: Generating novel inhibitors through hybridization of known ligands. Application to CDK2, p38, and HIV protease. J. Med. Chem. 2004, 47, 2768-2775
-
(2004)
J. Med. Chem.
, vol.47
, pp. 2768-2775
-
-
Pierce, A.C.1
Rao, G.2
Bemis, G.W.3
-
19
-
-
44949181722
-
Allosteric modulation of kinases and GPCRs: Design principles and structural diversity
-
Lewis, J.A.; Lebois, E.P.; Lindsley, C.W. Allosteric modulation of kinases and GPCRs: design principles and structural diversity. Curr. Opin. Chem. Biol. 2008, 12, 269-280
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 269-280
-
-
Lewis, J.A.1
Lebois, E.P.2
Lindsley, C.W.3
-
20
-
-
0024239320
-
Methods for drug discovery: Development of potent, selective, orally effective cholecystokinin antagonists
-
Evans, B.E.; Rittle, K.E.; Bock, M.G.; DiPardo, R.M.; Freidinger, R.M.; Whitter, W.L.; Lundell, G.F.; Veber, D.F.; Anderson, P.S.; Chang, R.S. Methods for drug discovery: development of potent, selective, orally effective cholecystokinin antagonists. J. Med. Chem. 1988, 31, 2235-2246
-
(1988)
J. Med. Chem.
, vol.31
, pp. 2235-2246
-
-
Evans, B.E.1
Rittle, K.E.2
Bock, M.G.3
Dipardo, R.M.4
Freidinger, R.M.5
Whitter, W.L.6
Lundell, G.F.7
Veber, D.F.8
Anderson, P.S.9
Chang, R.S.10
-
21
-
-
17844408611
-
Target family-directed masterkeys in chemogenomics
-
Kubinyi, H.; Müller, G., Eds. Wiley-VCH, Weinheim
-
Müller, G. Target family-directed masterkeys in chemogenomics. In Methods and Principles in Medicinal Chemistry (2004), 22 (Chemogenomics in Drug Discovery). Kubinyi, H.; Müller, G., Eds. Wiley-VCH, Weinheim, 2004, pp. 7-41.
-
(2004)
Methods and Principles in Medicinal Chemistry (2004), 22 (Chemogenomics in Drug Discovery)
, pp. 7-41
-
-
Müller, G.1
-
22
-
-
18244382828
-
Combinatorial synthesis of 3-(Amidoalkyl) and 3-(Aminoalkyl)-2-arylindole derivatives: Discovery of potent ligands for a variety of G-protein coupled receptors
-
DOI 10.1016/S0960-894X(01)00665-5, PII S0960894X01006655
-
Willoughby, C.A.; Hutchins, S.M.; Rosauer, K.G.; Dhar, M.J.; Chapman, K.T.; Chicchi, G.G.; Sadowski, S.; Weinberg, D.H.; Patel, S.; Malkowitz, L.; Di Salvo, J.; Pacholok, S.G.; Cheng, K. Combinatorial synthesis of 3-(amidoalkyl) and 3-(aminoalkyl)-2- arylindole derivatives: discovery of potent ligands for a variety of G-protein coupled receptors. Bioorg. Med. Chem. Lett. 2002, 12, 93-96 (Pubitemid 34008577)
-
(2002)
Bioorganic and Medicinal Chemistry Letters
, vol.12
, Issue.1
, pp. 93-96
-
-
Willoughby, C.A.1
Hutchins, S.M.2
Rosauer, K.G.3
Dhar, M.J.4
Chapman, K.T.5
Chicchi, G.G.6
Sadowski, S.7
Weinberg, D.H.8
Patel, S.9
Malkowitz, L.10
Di Salvo, J.11
Pacholok, S.G.12
Cheng, K.13
-
23
-
-
0842304428
-
Recognition of Privileged Structures by G-Protein Coupled Receptors
-
DOI 10.1021/jm0309452
-
Bondensgaard, K.; Ankersen, M.; Thøgersen, H.; Hansen, B.S.; Wulff, B.S.; Bywater, R.P. Recognition of privileged structures by G-protein coupled receptors. J. Med. Chem. 2004, 47, 888-899 (Pubitemid 38176791)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.4
, pp. 888-899
-
-
Bondensgaard, K.1
Ankersen, M.2
Thogersen, H.3
Hansen, B.S.4
Wulff, B.S.5
Bywater, R.P.6
-
25
-
-
0029894013
-
The properties of known drugs. 1. Molecular frameworks
-
Bemis, G.W.; Murcko, M.A. The properties of known drugs. 1. Molecular frameworks. J. Med. Chem. 1996, 39, 2887-2893
-
(1996)
J. Med. Chem.
, vol.39
, pp. 2887-2893
-
-
Bemis, G.W.1
Murcko, M.A.2
-
26
-
-
34547265045
-
Properties and architecture of drugs and natural products revisited
-
Grabowski, K.; Schneider, G. Properties and architecture of drugs and natural products revisited. Curr. Chem. Biol. 2007, 1, 115-127
-
(2007)
Curr. Chem. Biol.
, vol.1
, pp. 115-127
-
-
Grabowski, K.1
Schneider, G.2
-
27
-
-
77149178710
-
BioCores: Identification of a drug/natural product-based privileged structural motif for small-molecule lead discovery
-
in Press, PMID: 19468851
-
Kombarov, R.; Altieri, A.; Genis, D.; Kirpichenok, M.; Kochubey, V.; Rakitina, N.; Titarenko, Z. BioCores: identification of a drug/natural product-based privileged structural motif for small-molecule lead discovery. Mol. Divers. 2009, in Press, PMID: 19468851.
-
(2009)
Mol. Divers.
-
-
Kombarov, R.1
Altieri, A.2
Genis, D.3
Kirpichenok, M.4
Kochubey, V.5
Rakitina, N.6
Titarenko, Z.7
-
28
-
-
33645422011
-
Are target-family-privileged substructures truly privileged?
-
Schnur, D.M.; Hermsmeier, M.A.; Tebben, A.J. Are target-family-privileged substructures truly privileged? J. Med. Chem. 2006, 49, 2000-2009
-
(2006)
J. Med. Chem.
, vol.49
, pp. 2000-2009
-
-
Schnur, D.M.1
Hermsmeier, M.A.2
Tebben, A.J.3
-
29
-
-
0348142123
-
Chemogenomics with Peptide Secondary Structure Mimetics
-
Eguchi, M.; McMillan, M.; Nguyen, C.; Teo, J.L.; Chi, E.Y.; Henderson, W.R. Jr.; Kahn, M. Chemogenomics with peptide secondary structure mimetics. Comb. Chem. High Throughput. Screen. 2003, 6, 611-621 (Pubitemid 38017490)
-
(2003)
Combinatorial Chemistry and High Throughput Screening
, vol.6
, Issue.7
, pp. 611-621
-
-
Eguchi, M.1
McMillan, M.2
Nguyen, C.3
Teo, J.-L.4
Chi, E.Y.5
Henderson Jr., W.R.6
Kahn, M.7
-
30
-
-
70450218590
-
Chemogenomics with protein secondary structure mimetics
-
Jacoby, E., Ed. Humana Press, New-York, in Press
-
Marshall, G.R.; Kuster, D.J.; Che, Y. Chemogenomics with protein secondary structure mimetics. In Chemogenomics: Methods and Applications; Jacoby, E., Ed. Humana Press, New-York, 2009, in Press.
-
(2009)
Chemogenomics: Methods and Applications
-
-
Marshall, G.R.1
Kuster, D.J.2
Che, Y.3
-
31
-
-
0032818586
-
Design criteria for molecular mimics of fragments of the β-turn. 1. Cα atom analysis
-
DOI 10.1023/A:1008045403729
-
Garland, S.L.; Dean, P.M. Design criteria for molecular mimics of fragments of the beta-turn. 1. C alpha atom analysis. J. Comput. Aided Mol. Des. 1999, 13, 469-483 (Pubitemid 29395562)
-
(1999)
Journal of Computer-Aided Molecular Design
, vol.13
, Issue.5
, pp. 469-483
-
-
Garland, S.L.1
Dean, P.M.2
-
32
-
-
0032842085
-
Design criteria for molecular mimics of fragments of the β-turn. 2. Cα-Cβ bond vector analysis
-
DOI 10.1023/A:1008014620568
-
Garland, S.L.; Dean, P.M. Design criteria for molecular mimics of fragments of the beta-turn. 2. C alpha-C beta bond vector analysis. J. Comput. Aided Mol. Des. 1999, 13, 485-498 (Pubitemid 29395563)
-
(1999)
Journal of Computer-Aided Molecular Design
, vol.13
, Issue.5
, pp. 485-498
-
-
Garland, S.L.1
Dean, P.M.2
-
33
-
-
34547235540
-
Application of a novel design paradigm to generate general nonpeptide combinatorial templates mimicking beta-turns: Synthesis of ligands for melanocortin receptors
-
Webb, T.R.; Jiang, L.; Sviridov, S.; Venegas, R.E.; Vlaskina, A.V.; McGrath, D.; Tucker, J.; Wang, J.; Deschenes, A.; Li, R. Application of a novel design paradigm to generate general nonpeptide combinatorial templates mimicking beta-turns: synthesis of ligands for melanocortin receptors. J. Comb. Chem. 2007, 9, 704-710
-
(2007)
J. Comb. Chem.
, vol.9
, pp. 704-710
-
-
Webb, T.R.1
Jiang, L.2
Sviridov, S.3
Venegas, R.E.4
Vlaskina, A.V.5
McGrath, D.6
Tucker, J.7
Wang, J.8
Deschenes, A.9
Li, R.10
-
34
-
-
33645827371
-
Targeting protein-protein interactions by rational design: Mimicry of protein surfaces
-
Fletcher, S.; Hamilton, A.D. Targeting protein-protein interactions by rational design: mimicry of protein surfaces. J. R. Soc. Interface. 2006, 3, 215-233
-
(2006)
J. R. Soc. Interface.
, vol.3
, pp. 215-233
-
-
Fletcher, S.1
Hamilton, A.D.2
-
35
-
-
34447574010
-
Protein recognition motifs: Design of peptidomimetics of helix surfaces
-
Che, Y.; Brooks, B.R.; Marshall, G.R. Protein recognition motifs: design of peptidomimetics of helix surfaces. Biopolymers 2007, 86, 288-297
-
(2007)
Biopolymers
, vol.86
, pp. 288-297
-
-
Che, Y.1
Brooks, B.R.2
Marshall, G.R.3
-
36
-
-
36549056638
-
Benzoylurea oligomers: Synthetic foldamers that mimic extended alpha helices
-
Rodriguez, J.M.; Hamilton, A.D. Benzoylurea oligomers: synthetic foldamers that mimic extended alpha helices. Angew. Chem. Int. Ed. Engl. 2007, 46, 8614-8617
-
(2007)
Angew. Chem. Int. Ed. Engl.
, vol.46
, pp. 8614-8617
-
-
Rodriguez, J.M.1
Hamilton, A.D.2
-
37
-
-
34848921166
-
Synthesis of pyridazine-based scaffolds as alpha-helix mimetics
-
Volonterio, A.; Moisan, L.; Rebek, J. Jr. Synthesis of pyridazine-based scaffolds as alpha-helix mimetics. Org. Lett. 2007, 9, 3733-3736
-
(2007)
Org. Lett.
, vol.9
, pp. 3733-3736
-
-
Volonterio, A.1
Moisan, L.2
Rebek Jr., J.3
-
38
-
-
34447509585
-
Heterocyclic α-helix mimetics for targeting protein-protein interactions
-
DOI 10.1016/j.bmcl.2007.05.075, PII S0960894X07006440
-
Biros, S.M.; Moisan, L.; Mann, E.; Carella, A.; Zhai, D.; Reed, J.C.; Rebek, J. Jr. Heterocyclic alpha-helix mimetics for targeting protein-protein interactions. Bioorg. Med. Chem. Lett. 2007 , 17, 4641-4645 (Pubitemid 47064505)
-
(2007)
Bioorganic and Medicinal Chemistry Letters
, vol.17
, Issue.16
, pp. 4641-4645
-
-
Biros, S.M.1
Moisan, L.2
Mann, E.3
Carella, A.4
Zhai, D.5
Reed, J.C.6
Rebek Jr., J.7
-
39
-
-
65549118222
-
Synthetic inhibitors of extended helix-protein interactions based on a biphenyl 4,4′-dicarboxamide scaffold
-
Rodriguez, J.M.; Nevola, L.; Ross, N.T.; Lee, G.I.; Hamilton, A.D. Synthetic inhibitors of extended helix-protein interactions based on a biphenyl 4,4′-dicarboxamide scaffold. Chembiochem 2009, 23, 829-833
-
(2009)
Chembiochem
, vol.23
, pp. 829-833
-
-
Rodriguez, J.M.1
Nevola, L.2
Ross, N.T.3
Lee, G.I.4
Hamilton, A.D.5
-
40
-
-
65549092187
-
Alpha-helix mimetics: Progress toward effective modulation of protein-protein complexes
-
Parks, D.J.; Player, M.R. Alpha-helix mimetics: progress toward effective modulation of protein-protein complexes. Frontiers in Drug Design and Discovery. 2007, 3, 5-44.
-
(2007)
Frontiers in Drug Design and Discovery
, vol.3
, pp. 5-44
-
-
Parks, D.J.1
Player, M.R.2
-
41
-
-
70450220152
-
Cofactor chemogenomics
-
Jacoby, E., Ed. Humana Press, New-York, in Press
-
[41 ] Singh, R. ; Mozzarelli, A. Cofactor chemogenomics. In Chemogenomics: Methods and Applications; Jacoby, E., Ed. Humana Press, New-York, 2009, in Press.
-
(2009)
Chemogenomics: Methods and Applications
-
-
Singh, R.1
Mozzarelli, A.2
-
42
-
-
35148837586
-
Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery
-
Ji, H.F.; Kong, D.X.; Shen, L.; Chen, L.L.; Ma, B.G.; Zhang, H.Y. Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery. Genome Biol. 2007, 8, R176.
-
(2007)
Genome Biol.
, vol.8
-
-
Ji, H.F.1
Kong, D.X.2
Shen, L.3
Chen, L.L.4
Ma, B.G.5
Zhang, H.Y.6
-
43
-
-
0034651543
-
When fold is not important: A common structural framework for adenine and AMP binding in 12 unrelated protein families
-
Denessiouk, K.A.; Johnson, M.S. When fold is not important: a common structural framework for adenine and AMP binding in 12 unrelated protein families. Proteins 2000, 38, 310-326
-
(2000)
Proteins
, vol.38
, pp. 310-326
-
-
Denessiouk, K.A.1
Johnson, M.S.2
-
44
-
-
0035882572
-
Adenine recognition: A motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins
-
Denessiouk, K.A.; Rantanen, V.V.; Johnson, M.S. Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins. Proteins 2001, 44, 282-291
-
(2001)
Proteins
, vol.44
, pp. 282-291
-
-
Denessiouk, K.A.1
Rantanen, V.V.2
Johnson, M.S.3
-
45
-
-
33746349572
-
Targeting cancer: The challenges and successes of structure-based drug design against the human purinome
-
Knapp, M.; Bellamacina, C.; Murray, J.M.; Bussiere, D.E. Targeting cancer: the challenges and successes of structure-based drug design against the human purinome. Curr. Top. Med. Chem. 2006, 6, 1129-1159
-
(2006)
Curr. Top. Med. Chem.
, vol.6
, pp. 1129-1159
-
-
Knapp, M.1
Bellamacina, C.2
Murray, J.M.3
Bussiere, D.E.4
-
46
-
-
34248582557
-
Pyridoxal 5′-phosphate enzymes as targets for therapeutic agents
-
DOI 10.2174/092986707780597899
-
Amadasi, A.; Bertoldi, M.; Contestabile, R.; Bettati, S.; Cellini, B.; di Salvo, M.L.; Borri-Voltattorni, C.; Bossa, F.; Mozzarelli, A. Pyridoxal 5′-phosphate enzymes as targets for therapeutic agents. Curr. Med. Chem. 2007, 14, 1291-1324 (Pubitemid 46746362)
-
(2007)
Current Medicinal Chemistry
, vol.14
, Issue.12
, pp. 1291-1324
-
-
Amadasi, A.1
Bertoldi, M.2
Contestabile, R.3
Bettati, S.4
Cellini, B.5
Luigi Di Salvo, M.6
Borri-Voltattorni, C.7
Bossa, F.8
Mozzarelli, A.9
-
47
-
-
1542350238
-
Systems-based design of bi-ligand inhibitors of oxidoreductases: Filling the chemical proteomic toolbox
-
DOI 10.1016/S1074-5521(04)00034-1, PII S1074552104000341
-
Sem, D.S.; Bertolaet, B.; Baker, B.; Chang, E.; Costache, A.D.; Coutts, S.; Dong, Q.; Hansen, M.; Hong, V.; Huang, X.; Jack, R.M.; Kho, R.; Lang, H.; Ma, C.T.; Meininger, D.; Pellecchia, M.; Pierre, F.; Villar, H.; Yu, L. Systems-based design of bi-ligand inhibitors of oxidoreductases: filling the chemical proteomic toolbox. Chem. Biol. 2004, 11, 185-194 (Pubitemid 38300289)
-
(2004)
Chemistry and Biology
, vol.11
, Issue.2
, pp. 185-194
-
-
Sem, D.S.1
Bertolaet, B.2
Baker, B.3
Chang, E.4
Costache, A.D.5
Coutts, S.6
Dong, Q.7
Hansen, M.8
Hong, V.9
Huang, X.10
Jack, R.M.11
Kho, R.12
Lang, H.13
Ma, C.-T.14
Meininger, D.15
Pellecchia, M.16
Pierre, F.17
Villar, H.18
Yu, L.19
-
48
-
-
49449109858
-
Chemical proteomics-based drug design: Target and antitarget fishing with a catechol-rhodanine privileged scaffold for NAD(P)(H) binding proteins
-
Ge, X.; Wakim, B.; Sem, D.S. Chemical proteomics-based drug design: target and antitarget fishing with a catechol-rhodanine privileged scaffold for NAD(P)(H) binding proteins. J. Med. Chem. 2008, 51, 4571-4580
-
(2008)
J. Med. Chem.
, vol.51
, pp. 4571-4580
-
-
Ge, X.1
Wakim, B.2
Sem, D.S.3
-
49
-
-
3042799070
-
A planning strategy for diversity-oriented synthesis
-
Burke, M.D.; Schreiber, S.L. A planning strategy for diversity-oriented synthesis. Angew. Chem. Int. Ed. Engl. 2004, 43, 46-58.
-
(2004)
Angew. Chem. Int. Ed. Engl.
, vol.43
, pp. 46-58
-
-
Burke, M.D.1
Schreiber, S.L.2
-
50
-
-
42249095476
-
Anti-MRSA agent discovery using diversity-oriented synthesis
-
Thomas, G.L.; Spandl, R.J.; Glansdorp, F.G.; Welch, M.; Bender, A.; Cockfield, J.; Lindsay, J.A.; Bryant, C.; Brown, D.F.; Loiseleur, O.; Rudyk, H.; Ladlow, M.; Spring, D.R. Anti-MRSA agent discovery using diversity-oriented synthesis. Angew. Chem. Int. Ed. Engl. 2008, 47, 2808-2812
-
(2008)
Angew. Chem. Int. Ed. Engl.
, vol.47
, pp. 2808-2812
-
-
Thomas, G.L.1
Spandl, R.J.2
Glansdorp, F.G.3
Welch, M.4
Bender, A.5
Cockfield, J.6
Lindsay, J.A.7
Bryant, C.8
Brown, D.F.9
Loiseleur, O.10
Rudyk, H.11
Ladlow, M.12
Spring, D.R.13
-
51
-
-
42449139634
-
Biology-inspired synthesis of compound libraries
-
Kaiser, M.; Wetzel, S.; Kumar, K.; Waldmann, H. Biology-inspired synthesis of compound libraries. Cell Mol. Life. Sci. 2008, 65, 1186-1201
-
(2008)
Cell Mol. Life. Sci.
, vol.65
, pp. 1186-1201
-
-
Kaiser, M.1
Wetzel, S.2
Kumar, K.3
Waldmann, H.4
-
52
-
-
28444498830
-
Charting biologically relevant chemical space: A structural classification of natural products (SCONP)
-
Koch, M.A.; Schuffenhauer, A.; Scheck, M.; Wetzel, S.; Casaulta, M.; Odermatt, A.; Ertl, P.; Waldmann, H. Charting biologically relevant chemical space: a structural classification of natural products (SCONP). Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17272-17277
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17272-17277
-
-
Koch, M.A.1
Schuffenhauer, A.2
Scheck, M.3
Wetzel, S.4
Casaulta, M.5
Odermatt, A.6
Ertl, P.7
Waldmann, H.8
-
53
-
-
10044253102
-
Compound library development guided by protein structure similarity clustering and natural product structure
-
DOI 10.1073/pnas.0404719101
-
Koch, M.A.; Wittenberg, L.O.; Basu, S.; Jeyaraj, D.A.; Gourzoulidou, E.; Reinecke, K.; Odermatt, A.; Waldmann, H. Compound library development guided by protein structure similarity clustering and natural product structure. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 16721-16726 (Pubitemid 39601305)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.48
, pp. 16721-16726
-
-
Koch, M.A.1
Wittenberg, L.-O.2
Basu, S.3
Jeyaraj, D.A.4
Gourzoulidou, E.5
Reinecke, K.6
Odermatt, A.7
Waldmann, H.8
-
54
-
-
44949243928
-
New directions in library design and analysis
-
Gillet, V.J. New directions in library design and analysis. Curr. Opin. Chem. Biol. 2008, 12, 372-378
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 372-378
-
-
Gillet, V.J.1
|