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Volumn 24, Issue 2, 2007, Pages 374-381

Synonymous codon usage in Escherichia coli: Selection for translational accuracy

Author keywords

Synonymous codon use; Translational accuracy; Translational selection

Indexed keywords

AMINO ACID;

EID: 33846786904     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl166     Document Type: Article
Times cited : (262)

References (79)
  • 1
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • Akashi H. 1994. Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics. 136:927-935.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 2
    • 0041817645 scopus 로고    scopus 로고
    • Translational selection and yeast proteome evolution
    • Akashi H. 2003. Translational selection and yeast proteome evolution. Genetics. 164:1291-1303.
    • (2003) Genetics , vol.164 , pp. 1291-1303
    • Akashi, H.1
  • 3
    • 0031738130 scopus 로고    scopus 로고
    • Translational selection and molecular evolution
    • Akashi H, Eyre-Walker A. 1998. Translational selection and molecular evolution. Curr Opin Genet Dev. 8:688-693.
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 688-693
    • Akashi, H.1    Eyre-Walker, A.2
  • 4
    • 0037133671 scopus 로고    scopus 로고
    • Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
    • Akashi H, Gojobori T. 2002. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA. 99:3695-3670.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 3695-3670
    • Akashi, H.1    Gojobori, T.2
  • 5
    • 0034681511 scopus 로고    scopus 로고
    • Evidence for a high frequency of simultaneously double-nucleotide mutations
    • Averof M, Rokas A, Wolfe KH, Sharp PM. 2000. Evidence for a high frequency of simultaneously double-nucleotide mutations. Science. 287:1283-1286.
    • (2000) Science , vol.287 , pp. 1283-1286
    • Averof, M.1    Rokas, A.2    Wolfe, K.H.3    Sharp, P.M.4
  • 6
    • 0033000112 scopus 로고    scopus 로고
    • Synonymous nucleotide divergence and saturation: Effects of site-specific variations and mutation rates
    • Berg OG. 1999. Synonymous nucleotide divergence and saturation: effects of site-specific variations and mutation rates. J Mol Evol. 48:398-407.
    • (1999) J Mol Evol , vol.48 , pp. 398-407
    • Berg, O.G.1
  • 7
    • 0031586223 scopus 로고    scopus 로고
    • Growth rate-optimised tRNA abundance and codon usage
    • Berg OG, Kurland CG. 1997. Growth rate-optimised tRNA abundance and codon usage. J Mol Biol. 270:544-550.
    • (1997) J Mol Biol , vol.270 , pp. 544-550
    • Berg, O.G.1    Kurland, C.G.2
  • 8
    • 0029082357 scopus 로고
    • Synonymous substitution rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure
    • Berg OG, Martelius M. 1995. Synonymous substitution rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure. J Mol Biol. 41:449-456.
    • (1995) J Mol Biol , vol.41 , pp. 449-456
    • Berg, O.G.1    Martelius, M.2
  • 9
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • Bernstein JA, Khodursky AB, Lin P-H, Lin-Chao S, Cohen SN. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci USA. 99(15):9697-9702.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.15 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.-H.3    Lin-Chao, S.4    Cohen, S.N.5
  • 10
    • 0037108764 scopus 로고    scopus 로고
    • Linkage limits the power of natural selection in Drosophila
    • Betancourt A, Presgraves D. 2002. Linkage limits the power of natural selection in Drosophila. Proc Natl Acad Sci USA. 99(21):13616-13620.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.21 , pp. 13616-13620
    • Betancourt, A.1    Presgraves, D.2
  • 11
    • 0023126266 scopus 로고
    • Coevolution of codon usage and transfer RNA abundance
    • Bulmer M. 1987. Coevolution of codon usage and transfer RNA abundance. Nature. 325(6106):728-730.
    • (1987) Nature , vol.325 , Issue.6106 , pp. 728-730
    • Bulmer, M.1
  • 12
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • Bulmer M. 1991. The selection-mutation-drift theory of synonymous codon usage. Genetics. 129:897-907.
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 13
    • 33644747335 scopus 로고    scopus 로고
    • Why are phenotypic mutation rates much higher than genotypic mutation rates?
    • Bürger R, Willensdorfer M, Nowak MA. 2006. Why are phenotypic mutation rates much higher than genotypic mutation rates? Genetics. 172:197-206.
    • (2006) Genetics , vol.172 , pp. 197-206
    • Bürger, R.1    Willensdorfer, M.2    Nowak, M.A.3
  • 14
    • 33745624539 scopus 로고    scopus 로고
    • The rate of adaptive evolution in enteric bacteria
    • Charlesworth J, Eyre-Walker A. 2006. The rate of adaptive evolution in enteric bacteria. Mol Biol Evol. 23(7):1348-1356.
    • (2006) Mol Biol Evol , vol.23 , Issue.7 , pp. 1348-1356
    • Charlesworth, J.1    Eyre-Walker, A.2
  • 15
    • 0034666040 scopus 로고    scopus 로고
    • Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
    • Coghlan A, Wolfe KH. 2000. Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast. 16:1131-1145.
    • (2000) Yeast , vol.16 , pp. 1131-1145
    • Coghlan, A.1    Wolfe, K.H.2
  • 16
    • 0032894285 scopus 로고    scopus 로고
    • Natural selection on synonymous sites is correlated with gene length and recombination rate in Drosophila
    • Comeron JM, Kreitman M, Aguade M. 1999. Natural selection on synonymous sites is correlated with gene length and recombination rate in Drosophila. Genetics. 151:239-249.
    • (1999) Genetics , vol.151 , pp. 239-249
    • Comeron, J.M.1    Kreitman, M.2    Aguade, M.3
  • 17
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong H, Nielsen L, Kurland CG. 1996. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol. 260:649-663.
    • (1996) J Mol Biol , vol.260 , pp. 649-663
    • Dong, H.1    Nielsen, L.2    Kurland, C.G.3
  • 18
    • 0344237338 scopus 로고    scopus 로고
    • Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K 12 genome
    • Dos Reis M, Wernisch L, Sava R. 2003. Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K 12 genome. Nucleic Acids Res. 31(23):6976-6985.
    • (2003) Nucleic Acids Res , vol.31 , Issue.23 , pp. 6976-6985
    • Dos Reis, M.1    Wernisch, L.2    Sava, R.3
  • 20
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rates of yeast protein evolution
    • Drummond DA, Raval A, Wilke CO. 2005. A single determinant dominates the rates of yeast protein evolution. Mol Biol Evol. 23(3):327-337.
    • (2005) Mol Biol Evol , vol.23 , Issue.3 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3
  • 21
    • 0034237669 scopus 로고    scopus 로고
    • tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of high expression genes
    • Duret L. 2000. tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of high expression genes. Trends Genet. 16:287-289.
    • (2000) Trends Genet , vol.16 , pp. 287-289
    • Duret, L.1
  • 22
    • 0036889468 scopus 로고    scopus 로고
    • Evolution of synonymous codon usage in metazoans
    • Duret L. 2002. Evolution of synonymous codon usage in metazoans. Curr Opin Genet Dev. 12:640-649.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 640-649
    • Duret, L.1
  • 23
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern, and surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
    • Duret L, Mouchiroud D. 1999. Expression pattern, and surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci USA. 96:4482-4487.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 24
    • 0029931535 scopus 로고    scopus 로고
    • Synonymous codon bias is related to gene length in Escherichia coli: Selection for translational accuracy?
    • Eyre-Walker A. 1996a. Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy? Mol Biol Evol. 13:864-872.
    • (1996) Mol Biol Evol , vol.13 , pp. 864-872
    • Eyre-Walker, A.1
  • 25
    • 0029878715 scopus 로고    scopus 로고
    • The close proximity of Escherichia coli genes: Consequences for stop codon and synonymous codon use
    • Eyre-Walker A. 1996b. The close proximity of Escherichia coli genes: consequences for stop codon and synonymous codon use. J Mol Evol. 42:73-78.
    • (1996) J Mol Evol , vol.42 , pp. 73-78
    • Eyre-Walker, A.1
  • 26
    • 0027432923 scopus 로고
    • Reduced synonymous substitution rate at the start of enterobacterial genes
    • Eyre-Walker A, Bulmer M. 1993. Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res. 21:4599-4603.
    • (1993) Nucleic Acids Res , vol.21 , pp. 4599-4603
    • Eyre-Walker, A.1    Bulmer, M.2
  • 27
    • 0029027991 scopus 로고
    • Synonymous substitution rates in enterobacteria
    • Eyre-Walker A, Bulmer M. 1995. Synonymous substitution rates in enterobacteria. Genetics. 140:1407-1412.
    • (1995) Genetics , vol.140 , pp. 1407-1412
    • Eyre-Walker, A.1    Bulmer, M.2
  • 28
    • 0343665638 scopus 로고    scopus 로고
    • How translational accuracy influences reading frame maintenance
    • Farabough PJ, Björk GR. 1999. How translational accuracy influences reading frame maintenance. EMBO J. 18(6):1427-1434.
    • (1999) EMBO J , vol.18 , Issue.6 , pp. 1427-1434
    • Farabough, P.J.1    Björk, G.R.2
  • 29
    • 0031662136 scopus 로고    scopus 로고
    • The genetic code is one in a million
    • Freeland SJ, Hurst LD. 1998. The genetic code is one in a million. J Mol Evol. 47:238-248.
    • (1998) J Mol Evol , vol.47 , pp. 238-248
    • Freeland, S.J.1    Hurst, L.D.2
  • 30
    • 33645399045 scopus 로고    scopus 로고
    • A model of protein translation including codon bias, nonsense errors, and ribosome recycling
    • Gilchrist MA, Wagner A. 2006. A model of protein translation including codon bias, nonsense errors, and ribosome recycling. J Theor Biol. 239:417-434.
    • (2006) J Theor Biol , vol.239 , pp. 417-434
    • Gilchrist, M.A.1    Wagner, A.2
  • 31
    • 11144241326 scopus 로고    scopus 로고
    • Correlation of codon bias measures with mRNA levels: Analysis of transcriptome data from Escherichia coli
    • Goetz R, Fuglsang A. 2005. Correlation of codon bias measures with mRNA levels: analysis of transcriptome data from Escherichia coli. Biochem Biophys Res Commun. 327:4-7.
    • (2005) Biochem Biophys Res Commun , vol.327 , pp. 4-7
    • Goetz, R.1    Fuglsang, A.2
  • 32
    • 0020491327 scopus 로고
    • Codon usage in bacteria: Correlation with gene expressivity
    • Gouy M, Gautier C. 1982. Codon usage in bacteria: correlation with gene expressivity. Nucleic Acids Res. 10:7055-7074.
    • (1982) Nucleic Acids Res , vol.10 , pp. 7055-7074
    • Gouy, M.1    Gautier, C.2
  • 33
    • 0025144939 scopus 로고
    • RNA primary sequence or secondary structure in the translational initiation region controls expression of two variant interferon-β genes in Escherichia coli
    • Gross G, Mielke C, Hollatz I, Blöcker H, Frank R. 1990. RNA primary sequence or secondary structure in the translational initiation region controls expression of two variant interferon-β genes in Escherichia coli. J Biol Chem. 265(29):17627-17636.
    • (1990) J Biol Chem , vol.265 , Issue.29 , pp. 17627-17636
    • Gross, G.1    Mielke, C.2    Hollatz, I.3    Blöcker, H.4    Frank, R.5
  • 34
    • 0026327996 scopus 로고
    • A quantitative measure of error-minimization in the genetic code
    • Haig D, Hurst LD. 1991. A quantitative measure of error-minimization in the genetic code. J Mol Evol. 33:412-417.
    • (1991) J Mol Evol , vol.33 , pp. 412-417
    • Haig, D.1    Hurst, L.D.2
  • 35
    • 0027978722 scopus 로고
    • Selection intensity for codon bias
    • Hartl DL, Moiyama EN, Sawyer S. 1994. Selection intensity for codon bias. Genetics. 138:227-234.
    • (1994) Genetics , vol.138 , pp. 227-234
    • Hartl, D.L.1    Moiyama, E.N.2    Sawyer, S.3
  • 36
    • 0037133638 scopus 로고    scopus 로고
    • Stop codon preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
    • Hayes CS, Bose B, Sauer RT. 2001. Stop codon preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc Natl Acad Sci USA. 99(6):3440-3445.
    • (2001) Proc Natl Acad Sci USA , vol.99 , Issue.6 , pp. 3440-3445
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 37
    • 0034666387 scopus 로고    scopus 로고
    • Gradients in nucleotide and codon usage along Escherichia coli genes
    • Hooper SD, Berg OG. 2000. Gradients in nucleotide and codon usage along Escherichia coli genes. Nucleic Acids Res. 28(18):3517-3523.
    • (2000) Nucleic Acids Res , vol.28 , Issue.18 , pp. 3517-3523
    • Hooper, S.D.1    Berg, O.G.2
  • 38
    • 0043163746 scopus 로고    scopus 로고
    • Transcription increases multiple spontaneous point mutations in Salmonella enterica
    • Hudson RE, Bergthorsen U, Ochman H. 2003. Transcription increases multiple spontaneous point mutations in Salmonella enterica. Nucleic Acids Res. 31(15):4517-4522.
    • (2003) Nucleic Acids Res , vol.31 , Issue.15 , pp. 4517-4522
    • Hudson, R.E.1    Bergthorsen, U.2    Ochman, H.3
  • 39
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • Ikemura T. 1981. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J Mol Biol. 146:1-21.
    • (1981) J Mol Biol , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 40
    • 0021958933 scopus 로고
    • Review codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. 1985. Review codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol. 2(1):13-34.
    • (1985) Mol Biol Evol , vol.2 , Issue.1 , pp. 13-34
    • Ikemura, T.1
  • 42
    • 0034821884 scopus 로고    scopus 로고
    • Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translational efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
    • Kanaya S, Yamada Y, Kinouchi M, Kudo Y, Ikemura T. 2001. Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translational efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. J Mol Evol. 53:290-298.
    • (2001) J Mol Evol , vol.53 , pp. 290-298
    • Kanaya, S.1    Yamada, Y.2    Kinouchi, M.3    Kudo, Y.4    Ikemura, T.5
  • 43
    • 0032882170 scopus 로고    scopus 로고
    • Studies on codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: Gene expression level and species specific diversity of codon usage based on multivariate analysis
    • Kanaya S, Yamada Y, Kudo Y, Ikemura T. 1999. Studies on codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species specific diversity of codon usage based on multivariate analysis. Gene. 238:143-155.
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4
  • 44
    • 0000847987 scopus 로고    scopus 로고
    • Regulation of ribosome synthesis
    • editor, Cellular and Molecular Biology. Washington DC, ASM Press. p
    • Keener J, Nomura M. 1996. Regulation of ribosome synthesis. Chapter 90. In: Neidhardt FC, editor. Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology. Washington (DC): ASM Press. p. 1417-1431.
    • (1996) Escherichia coli and Salmonella typhimurium , pp. 1417-1431
    • Keener, J.1    Nomura, M.2
  • 45
    • 0022997593 scopus 로고
    • Differential translation of the genes encoding proton-translocating ATPase of Escherichia coli
    • Klionsky DJ, Skalnik DG, Simoni RD. 1986. Differential translation of the genes encoding proton-translocating ATPase of Escherichia coli. J Biol Chem. 261:8096-8099.
    • (1986) J Biol Chem , vol.261 , pp. 8096-8099
    • Klionsky, D.J.1    Skalnik, D.G.2    Simoni, R.D.3
  • 47
    • 0000190405 scopus 로고    scopus 로고
    • Limitations of translational accuracy
    • editor, Cellular and Molecular Biology. Washington DC, ASM Press. p
    • Kurland CG, Hughes D, Ehrenberg M. 1996. Limitations of translational accuracy. Chapter 65. In: Neidhardt FC, editor. Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology. Washington (DC): ASM Press. p. 979-1004.
    • (1996) Escherichia coli and Salmonella typhimurium , pp. 979-1004
    • Kurland, C.G.1    Hughes, D.2    Ehrenberg, M.3
  • 48
    • 0023035207 scopus 로고
    • Ribosomal genes in Escherichia coli
    • Lindahl L, Zengel JM. 1986. Ribosomal genes in Escherichia coli. Annu Rev Genet. 20:297-326.
    • (1986) Annu Rev Genet , vol.20 , pp. 297-326
    • Lindahl, L.1    Zengel, J.M.2
  • 49
    • 0028088517 scopus 로고
    • Hydrophobicity, expressivity and aromacity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes
    • Lobry JR, Gautier C. 1994. Hydrophobicity, expressivity and aromacity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res. 22(15):3174-3180.
    • (1994) Nucleic Acids Res , vol.22 , Issue.15 , pp. 3174-3180
    • Lobry, J.R.1    Gautier, C.2
  • 50
    • 11944249127 scopus 로고    scopus 로고
    • Correlated evolution of synonymous and nonsynonymous sites in Drosophila
    • Marais G, Domazet-Loso D, Tautz D, Charlesworth B. 2005. Correlated evolution of synonymous and nonsynonymous sites in Drosophila. J Mol Evol. 59:771-779.
    • (2005) J Mol Evol , vol.59 , pp. 771-779
    • Marais, G.1    Domazet-Loso, D.2    Tautz, D.3    Charlesworth, B.4
  • 51
    • 0035012056 scopus 로고    scopus 로고
    • Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans
    • Marais G, Duret L. 2001. Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans. J Mol Evol. 52:275-280.
    • (2001) J Mol Evol , vol.52 , pp. 275-280
    • Marais, G.1    Duret, L.2
  • 52
    • 33744510963 scopus 로고    scopus 로고
    • Do universal codon-usage patterns minimize the effects of mutation and translation error?
    • Marquez R, Smit S, Knight R. 2005. Do universal codon-usage patterns minimize the effects of mutation and translation error? Genome Biol. 6(11):R91.
    • (2005) Genome Biol , vol.6 , Issue.11
    • Marquez, R.1    Smit, S.2    Knight, R.3
  • 53
    • 0029973860 scopus 로고    scopus 로고
    • Synonymous nucleoticle divergence: What is "saturation"?
    • Maynard Smith J, Smith NH. 1996a. Synonymous nucleoticle divergence: what is "saturation"? Genetics. 142:1033-1034.
    • (1996) Genetics , vol.142 , pp. 1033-1034
    • Maynard Smith, J.1    Smith, N.H.2
  • 54
    • 15844423271 scopus 로고    scopus 로고
    • Site-specific codon bias in bacteria
    • Maynard Smith J, Smith NH. 1996b. Site-specific codon bias in bacteria. Genetics. 142:1037-1043.
    • (1996) Genetics , vol.142 , pp. 1037-1043
    • Maynard Smith, J.1    Smith, N.H.2
  • 55
    • 0030731696 scopus 로고    scopus 로고
    • Codon usage and tRNA abundance in Drosophila
    • Moriyama EN, Powell JR. 1997. Codon usage and tRNA abundance in Drosophila. J Mol Evol. 45:514-523.
    • (1997) J Mol Evol , vol.45 , pp. 514-523
    • Moriyama, E.N.1    Powell, J.R.2
  • 56
    • 0032126484 scopus 로고    scopus 로고
    • Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
    • Moriyama EN, Powell JR. 1998. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. Nucleic Acids Res. 26(13):3188-3193.
    • (1998) Nucleic Acids Res , vol.26 , Issue.13 , pp. 3188-3193
    • Moriyama, E.N.1    Powell, J.R.2
  • 58
    • 0025935050 scopus 로고
    • Transient mutators: A semiquantitative analysis of the influence of translation and transcription errors on mutation rates
    • Ninio J. 1991.Transient mutators: a semiquantitative analysis of the influence of translation and transcription errors on mutation rates. Genetics. 129:957-962.
    • (1991) Genetics , vol.129 , pp. 957-962
    • Ninio, J.1
  • 59
    • 0032749381 scopus 로고    scopus 로고
    • Regulation of ribosome biosynthesis in Escherichia coli and Saccharomyces cerevisiae: Diversity and common principles
    • Nomura M. 1999. Regulation of ribosome biosynthesis in Escherichia coli and Saccharomyces cerevisiae: diversity and common principles. J Bact. 181(22):6857-6864.
    • (1999) J Bact , vol.181 , Issue.22 , pp. 6857-6864
    • Nomura, M.1
  • 60
    • 0346726023 scopus 로고    scopus 로고
    • Neutral mutations and neutral substitutions in bacterial genomes
    • Ochman H. 2003. Neutral mutations and neutral substitutions in bacterial genomes. J Biol Evol. 20(12):2091-2096.
    • (2003) J Biol E , vol.20 , Issue.12 , pp. 2091-2096
    • Ochman, H.1
  • 61
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • Pal C, Papp B, Hurst LD. 2001. Highly expressed genes in yeast evolve slowly. Genetics. 158:927-931.
    • (2001) Genetics , vol.158 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 62
    • 0009183442 scopus 로고    scopus 로고
    • dissertation, Nottingham UK, University of Nottingham
    • Peden JF. 1999. Analysis of codon usage [dissertation]. [Nottingham (UK)]: University of Nottingham.
    • (1999) Analysis of codon usage
    • Peden, J.F.1
  • 63
    • 0035282838 scopus 로고    scopus 로고
    • Restricted wobble rules for eukaryotic genomes
    • Percudani R. 2001. Restricted wobble rules for eukaryotic genomes. Trends Genet. 17:133-135.
    • (2001) Trends Genet , vol.17 , pp. 133-135
    • Percudani, R.1
  • 64
    • 17444449538 scopus 로고    scopus 로고
    • Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
    • Percudani R, Pavesi, Ottonello S. 1997. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol. 268:322-330.
    • (1997) J Mol Biol , vol.268 , pp. 322-330
    • Percudani, R.1
  • 65
    • 33748048133 scopus 로고    scopus 로고
    • Estimating selection pressures from limited comparative data
    • Plotkin JB, Dushoff J, Desai MM, Fraser HB. 2006. Estimating selection pressures from limited comparative data. Mol Biol Evol. 23(8):1457-1459.
    • (2006) Mol Biol Evol , vol.23 , Issue.8 , pp. 1457-1459
    • Plotkin, J.B.1    Dushoff, J.2    Desai, M.M.3    Fraser, H.B.4
  • 66
    • 2342423945 scopus 로고    scopus 로고
    • Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum
    • Plotkin JB, Dushoff J, Fraser HB. 2004. Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum. Nature. 428:942-945.
    • (2004) Nature , vol.428 , pp. 942-945
    • Plotkin, J.B.1    Dushoff, J.2    Fraser, H.B.3
  • 67
    • 11244324849 scopus 로고    scopus 로고
    • Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes
    • Qin H, Wu WB, Comeron JM, Kreitman M, Li W-H. 2004. Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes. Genetics. 168:2245-2260.
    • (2004) Genetics , vol.168 , pp. 2245-2260
    • Qin, H.1    Wu, W.B.2    Comeron, J.M.3    Kreitman, M.4    Li, W.-H.5
  • 68
    • 1242284655 scopus 로고    scopus 로고
    • An analysis of determinants of amino acids substitution rates in bacterial proteins
    • Rocha EPC, Danchin A. 2004. An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol. 21(1):108-116.
    • (2004) Mol Biol Evol , vol.21 , Issue.1 , pp. 108-116
    • Rocha, E.P.C.1    Danchin, A.2
  • 69
    • 0026002819 scopus 로고
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution
    • Sharp PM. 1991. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J Mol Evol. 33:23-33.
    • (1991) J Mol Evol , vol.33 , pp. 23-33
    • Sharp, P.M.1
  • 70
    • 0023650543 scopus 로고
    • The Codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp PM, Li W-H. 1987a. The Codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15:1281-1295.
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.-H.2
  • 71
    • 0023274170 scopus 로고
    • The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
    • Sharp PM, Li W-H. 1987b. The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol Biol Evol. 4:222-230.
    • (1987) Mol Biol Evol , vol.4 , pp. 222-230
    • Sharp, P.M.1    Li, W.-H.2
  • 72
    • 0034871459 scopus 로고    scopus 로고
    • Why are translationally suboptimal codons used in Escherichia coli?
    • Smith NGC, Eyre-Walker A. 2001. Why are translationally suboptimal codons used in Escherichia coli? J Mol Evol. 53:225-236.
    • (2001) J Mol Evol , vol.53 , pp. 225-236
    • Smith, N.G.C.1    Eyre-Walker, A.2
  • 73
  • 75
    • 1842596222 scopus 로고    scopus 로고
    • Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli
    • Sunohara T, Jojima K, Tagami H, Inada T, Aiba H. 2004. Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli. J Biol Chem. 279(15):15368-15375.
    • (2004) J Biol Chem , vol.279 , Issue.15 , pp. 15368-15375
    • Sunohara, T.1    Jojima, K.2    Tagami, H.3    Inada, T.4    Aiba, H.5
  • 76
    • 0027422858 scopus 로고
    • Mammalian gene evolution - nucleotide sequence divergence between mouse and rat
    • Wolfe KH, Sharp PM. 1993. Mammalian gene evolution - nucleotide sequence divergence between mouse and rat. J Mol Evol. 37:441-456.
    • (1993) J Mol Evol , vol.37 , pp. 441-456
    • Wolfe, K.H.1    Sharp, P.M.2
  • 77
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright S. 1990. The 'effective number of codons' used in a gene. Gene. 87:23-29.
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, S.1
  • 78
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-565.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-565
    • Yang, Z.1
  • 79
    • 0031805147 scopus 로고    scopus 로고
    • How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae?
    • Xia X. 1998. How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae? Genetics. 149:37-44.
    • (1998) Genetics , vol.149 , pp. 37-44
    • Xia, X.1


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