메뉴 건너뛰기




Volumn 13, Issue 10, 2003, Pages 2260-2264

The signature of selection mediated by expression on human genes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; DNA; OLIGONUCLEOTIDE;

EID: 0142092546     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.641103     Document Type: Article
Times cited : (217)

References (35)
  • 1
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster-Natural selection and translational accuracy
    • Akashi, H. 1994. Synonymous codon usage in Drosophila melanogaster-Natural selection and translational accuracy. Genetics 136: 927-935.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 2
    • 0035546157 scopus 로고    scopus 로고
    • Gene expression and molecular evolution
    • Akashi, H. 2001. Gene expression and molecular evolution. Curr. Opin. Gene Dev. 11: 660-666.
    • (2001) Curr. Opin. Gene Dev. , vol.11 , pp. 660-666
    • Akashi, H.1
  • 3
    • 0037133671 scopus 로고    scopus 로고
    • Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
    • Akashi, H. and Gojobori, T. 2002. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc. Natl. Acad. Sci. 99: 3695-3700.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 3695-3700
    • Akashi, H.1    Gojobori, T.2
  • 4
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • Bernardi, G. 1995. The human genome: Organization and evolutionary history. Ann. Rev. Genet. 29: 445-476.
    • (1995) Ann. Rev. Genet. , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 7
    • 0034666040 scopus 로고    scopus 로고
    • Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
    • Coghlan, A. and Wolfe, K.H. 2000. Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 16: 1131-1145.
    • (2000) Yeast , vol.16 , pp. 1131-1145
    • Coghlan, A.1    Wolfe, K.H.2
  • 8
    • 0028104077 scopus 로고
    • Selection on silent sites in the rodent H3 histone gene family
    • Debry, R.W. and Marzluff, W.F. 1994. Selection on silent sites in the rodent H3 histone gene family. Genetics 138: 191-202.
    • (1994) Genetics , vol.138 , pp. 191-202
    • Debry, R.W.1    Marzluff, W.F.2
  • 9
    • 0024416614 scopus 로고
    • Codon choice and gene-expression-Synonymous codons differ in translational accuracy
    • Dix, D.B. and Thompson, R.C. 1989. Codon choice and gene-expression-Synonymous codons differ in translational accuracy. Proc. Natl. Acad. Sci. 86: 6888-6892.
    • (1989) Proc. Natl. Acad. Sci. , vol.86 , pp. 6888-6892
    • Dix, D.B.1    Thompson, R.C.2
  • 10
    • 0031582635 scopus 로고    scopus 로고
    • Genetic code synonym quotas and amino acid complexity: Cutting the cost of proteins?
    • Dufton, M.J. 1997. Genetic code synonym quotas and amino acid complexity: Cutting the cost of proteins? J. Theor. Biol. 187: 165-173.
    • (1997) J. Theor. Biol. , vol.187 , pp. 165-173
    • Dufton, M.J.1
  • 11
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, Arabidopsis
    • Duret, L. and Mouchiroud, D. 1999. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, Arabidopsis. Proc. Natl. Acad. Sci. 96: 4482-4487.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 12
    • 0026323681 scopus 로고
    • An analysis of codon usage in mammals: Selection or mutation bias?
    • Eyre-Walker, A. 1991. An analysis of codon usage in mammals: Selection or mutation bias? J. Mol. Evol. 33: 442-449.
    • (1991) J. Mol. Evol. , vol.33 , pp. 442-449
    • Eyre-Walker, A.1
  • 13
    • 0020491327 scopus 로고
    • Codon usage in bacteria-Correlation with gene expressivity
    • Gouy, M. and Gautier, C. 1982. Codon usage in bacteria-Correlation with gene expressivity. Nucleic Acids Res. 10: 7055-7074.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 7055-7074
    • Gouy, M.1    Gautier, C.2
  • 14
    • 0036188913 scopus 로고    scopus 로고
    • Interactions between natural selection, recombination and gene density in the genes of Drosophila
    • Hey, J. and Kliman, R.M. 2002. Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics 160: 595-608.
    • (2002) Genetics , vol.160 , pp. 595-608
    • Hey, J.1    Kliman, R.M.2
  • 15
    • 0030099403 scopus 로고    scopus 로고
    • Imprinted genes have few and small introns
    • Hurst, L.D., McVean, G.T., and Moore, T. 1996. Imprinted genes have few and small introns. Nat. Genet. 12: 234-237.
    • (1996) Nat. Genet. , vol.12 , pp. 234-237
    • Hurst, L.D.1    McVean, G.T.2    Moore, T.3
  • 16
    • 0034736528 scopus 로고    scopus 로고
    • A test of translational selection at 'silent' sites in the human genome: Base composition comparisons in alternatively spliced genes
    • Iida, K. and Akashi, H. 2000. A test of translational selection at 'silent' sites in the human genome: Base composition comparisons in alternatively spliced genes. Gene 261: 93-105.
    • (2000) Gene , vol.261 , pp. 93-105
    • Iida, K.1    Akashi, H.2
  • 17
    • 0034653294 scopus 로고    scopus 로고
    • Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins
    • Jansen, R. and Gerstein, M. 2000. Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins. Nucleic Acids Res. 28: 1481-1488.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1481-1488
    • Jansen, R.1    Gerstein, M.2
  • 18
    • 0030569016 scopus 로고    scopus 로고
    • What drives codon choices in human genes?
    • Karlin, S. and Mrazek, J. 1996. What drives codon choices in human genes? J. Mol. Biol. 262: 459-472.
    • (1996) J. Mol. Biol. , vol.262 , pp. 459-472
    • Karlin, S.1    Mrazek, J.2
  • 20
    • 0036613754 scopus 로고    scopus 로고
    • Clustering of housekeeping genes provides a unified model of gene order in the human genome
    • Lercher, M.J., Urrutia, A.O., and Hurst, L.D. 2002. Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat. Genet. 31: 180-183.
    • (2002) Nat. Genet. , vol.31 , pp. 180-183
    • Lercher, M.J.1    Urrutia, A.O.2    Hurst, L.D.3
  • 21
    • 0029983088 scopus 로고    scopus 로고
    • Retroviral transfer and expression of a humanized, red-shifted green fluorescent protein gene into human tumor cells
    • Levy, J.P., Muldoon, R.R., Zolotukhin, S., and Link, C.J. 1996. Retroviral transfer and expression of a humanized, red-shifted green fluorescent protein gene into human tumor cells. Nat. Biotech. 14: 610-614.
    • (1996) Nat. Biotech. , vol.14 , pp. 610-614
    • Levy, J.P.1    Muldoon, R.R.2    Zolotukhin, S.3    Link, C.J.4
  • 22
    • 0038543069 scopus 로고    scopus 로고
    • Biased gene conversion: Implications for genome and sex evolution
    • Marais, G. 2003. Biased gene conversion: Implications for genome and sex evolution. Trends Genet. 19: 330-338.
    • (2003) Trends Genet. , vol.19 , pp. 330-338
    • Marais, G.1
  • 23
    • 0035877813 scopus 로고    scopus 로고
    • Identification and prevention of a GC content bias in SAGE libraries
    • Margulies, E., Kardia, S., and Innis, J. 2001. Identification and prevention of a GC content bias in SAGE libraries. Nucleic Acids Res.29: e60.
    • (2001) Nucleic Acids Res. , vol.29
    • Margulies, E.1    Kardia, S.2    Innis, J.3
  • 24
    • 0032126484 scopus 로고    scopus 로고
    • Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
    • Moriyama, E.N. and Powell, J.R. 1998. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. Nucleic Acids Res. 26: 3188-3193.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3188-3193
    • Moriyama, E.N.1    Powell, J.R.2
  • 25
    • 0023046874 scopus 로고
    • Codon usage in yeast-Cluster-analysis clearly differentiates highly and lowly expressed genes
    • Sharp, P.M., Tuohy, T.M.F., and Mosurski, K.R. 1986. Codon usage in yeast-Cluster-analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14: 5125-5143.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.F.2    Mosurski, K.R.3
  • 27
    • 0033745103 scopus 로고    scopus 로고
    • Nucleotide bias causes a genomewide bias in the amino acid composition of proteins
    • Singer, G.A.C. and Hickey, D.A. 2000. Nucleotide bias causes a genomewide bias in the amino acid composition of proteins. Mol. Biol. Evol. 17: 1581-1588.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1581-1588
    • Singer, G.A.C.1    Hickey, D.A.2
  • 28
    • 0032714307 scopus 로고    scopus 로고
    • The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents
    • Smith, N.G.C. and Hurst, L.D. 1999. The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents. Genetics 153: 1395-1402.
    • (1999) Genetics , vol.153 , pp. 1395-1402
    • Smith, N.G.C.1    Hurst, L.D.2
  • 31
    • 0035671698 scopus 로고    scopus 로고
    • Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection
    • Urrutia, A.O. and Hurst, L.D. 2001. Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection. Genetics 159: 1191-1199.
    • (2001) Genetics , vol.159 , pp. 1191-1199
    • Urrutia, A.O.1    Hurst, L.D.2
  • 33
    • 0035140887 scopus 로고    scopus 로고
    • Intron length and codon usage
    • Vinogradov, A.E. 2001. Intron length and codon usage. J. Mol. Evol. 52: 2-5.
    • (2001) J. Mol. Evol. , vol.52 , pp. 2-5
    • Vinogradov, A.E.1
  • 34
    • 0033208332 scopus 로고    scopus 로고
    • Codon optimization, genetic insulation, and an rtTA reporter improve performance of the tetracycline switch
    • Wells, K.D., Foster, J.A., Moore, K., Pursel, V.G., and Wall, R.J. 1999. Codon optimization, genetic insulation, and an rtTA reporter improve performance of the tetracycline switch. Transg. Res. 8: 371-381.
    • (1999) Transg. Res. , vol.8 , pp. 371-381
    • Wells, K.D.1    Foster, J.A.2    Moore, K.3    Pursel, V.G.4    Wall, R.J.5
  • 35
    • 0345188623 scopus 로고    scopus 로고
    • Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability
    • Zhou, J., Liu, W.J., Peng, S.W., Sun, X.Y., and Frazer, I. 1999. Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability. J. Virol. 73: 4972-4982.
    • (1999) J. Virol. , vol.73 , pp. 4972-4982
    • Zhou, J.1    Liu, W.J.2    Peng, S.W.3    Sun, X.Y.4    Frazer, I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.