메뉴 건너뛰기




Volumn 39, Issue 3, 2007, Pages 415-421

Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSFER RNA;

EID: 33847305359     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng1967     Document Type: Article
Times cited : (114)

References (29)
  • 1
    • 33646381380 scopus 로고    scopus 로고
    • Comparative genomics and genome evolution in yeasts
    • Wolfe, K.H. Comparative genomics and genome evolution in yeasts. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361, 403-412 (2006).
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.361 , pp. 403-412
    • Wolfe, K.H.1
  • 2
    • 13444304173 scopus 로고    scopus 로고
    • Chance caught on the wing: Cis-regulatory evolution and the origin of pigment patterns in Drosophila
    • Gompel, N., Prud'homme, B., Wittkopp, P.J., Kassner, V.A. & Carroll, S.B. Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433, 481-487 (2005).
    • (2005) Nature , vol.433 , pp. 481-487
    • Gompel, N.1    Prud'homme, B.2    Wittkopp, P.J.3    Kassner, V.A.4    Carroll, S.B.5
  • 3
    • 23244467882 scopus 로고    scopus 로고
    • Rewiring of the yeast transcriptional network through the evolution of motif usage
    • Ihmels, J. et al. Rewiring of the yeast transcriptional network through the evolution of motif usage. Science 309, 938-940 (2005).
    • (2005) Science , vol.309 , pp. 938-940
    • Ihmels, J.1
  • 4
    • 3543029168 scopus 로고    scopus 로고
    • Evolutionary adaptations of gene structure and expression in natural populations in relation to a changing environment: A multidisciplinary approach to address the million-year saga of a small fish
    • Powers, D.A. & Schulte, P.M. Evolutionary adaptations of gene structure and expression in natural populations in relation to a changing environment: a multidisciplinary approach to address the million-year saga of a small fish. J. Exp. Zool. 282, 71-94 (1998).
    • (1998) J. Exp. Zool , vol.282 , pp. 71-94
    • Powers, D.A.1    Schulte, P.M.2
  • 5
    • 4644280499 scopus 로고    scopus 로고
    • Solving the riddle of codon usage preferences: A test for translational selection
    • dos Reis, M., Savva, R. & Wernisch, L. Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Res. 32, 5036-5044 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. 5036-5044
    • dos Reis, M.1    Savva, R.2    Wernisch, L.3
  • 6
    • 0023650543 scopus 로고
    • The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M. & Li, W.H. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295 (1987).
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 7
    • 17444449538 scopus 로고    scopus 로고
    • Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
    • Percudani, R., Pavesi, A. & Ottonello, S. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J. Mol. Biol. 268, 322-330 (1997).
    • (1997) J. Mol. Biol , vol.268 , pp. 322-330
    • Percudani, R.1    Pavesi, A.2    Ottonello, S.3
  • 8
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T.M. & Eddy, S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 9
    • 18844374522 scopus 로고    scopus 로고
    • Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast
    • Tanay, A., Regev, A. & Shamir, R. Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast. Proc. Natl. Acad. Sci. USA 102, 7203-7208 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 7203-7208
    • Tanay, A.1    Regev, A.2    Shamir, R.3
  • 10
    • 0142215475 scopus 로고    scopus 로고
    • Global analysis of protein expression in yeast
    • Ghaemmaghami, S. et al. Global analysis of protein expression in yeast. Nature 425, 737-741 (2003).
    • (2003) Nature , vol.425 , pp. 737-741
    • Ghaemmaghami, S.1
  • 12
    • 14244266085 scopus 로고    scopus 로고
    • Relative predicted protein levels of functionally associated proteins are conserved across organisms
    • Lithwick, G. & Margalit, H. Relative predicted protein levels of functionally associated proteins are conserved across organisms. Nucleic Acids Res. 33, 1051-1057 (2005).
    • (2005) Nucleic Acids Res , vol.33 , pp. 1051-1057
    • Lithwick, G.1    Margalit, H.2
  • 13
    • 33847323825 scopus 로고    scopus 로고
    • Rice, J. Mathematical Statistics and Data Analysis (Wadsworth Publishing Company, Belmont, Calfiornia, 1995).
    • Rice, J. Mathematical Statistics and Data Analysis (Wadsworth Publishing Company, Belmont, Calfiornia, 1995).
  • 14
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Harris, M.A. et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32, D258-D261 (2004).
    • (2004) Nucleic Acids Res , vol.32
    • Harris, M.A.1
  • 15
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - a practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate - a practical and powerful approach to multiple testing. J. R. S. Soc. Ser. B. Methodol. 57, 289-300 (1995).
    • (1995) J. R. S. Soc. Ser. B. Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 16
    • 33646124003 scopus 로고    scopus 로고
    • The long hard road to a completed Candida albicans genome
    • Nantel, A. The long hard road to a completed Candida albicans genome. Fungal Genet. Biol. 43, 311-315 (2006).
    • (2006) Fungal Genet. Biol , vol.43 , pp. 311-315
    • Nantel, A.1
  • 17
    • 0030925208 scopus 로고    scopus 로고
    • Physiology and genetics of the dimorphic fungus Yarrowia lipolytica
    • Barth, G. & Gaillardin, C. Physiology and genetics of the dimorphic fungus Yarrowia lipolytica. FEMS Microbiol Rev 19, 219-237 (1997).
    • (1997) FEMS Microbiol Rev , vol.19 , pp. 219-237
    • Barth, G.1    Gaillardin, C.2
  • 18
    • 77955617560 scopus 로고    scopus 로고
    • A human-curated annotation of the Candida albicans genome
    • Braun, B.R. et al. A human-curated annotation of the Candida albicans genome. PLoS Genet 1, 36-57 (2005).
    • (2005) PLoS Genet , vol.1 , pp. 36-57
    • Braun, B.R.1
  • 19
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • Kellis, M., Birren, B.W. & Lander, E.S. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428, 617-624 (2004).
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 20
    • 0001225414 scopus 로고    scopus 로고
    • Systematics and evolution
    • eds. McLaughlin, D, McLaughlin, E. & Lemke, P, Springer, Berlin
    • Berbee, M. & Taylor, J. Systematics and evolution. in The Mycota, Vol. VIIB (eds. McLaughlin, D., McLaughlin, E. & Lemke, P.) 229-245 (Springer, Berlin, 2001).
    • (2001) The Mycota , vol.VIIB , pp. 229-245
    • Berbee, M.1    Taylor, J.2
  • 21
    • 33846079989 scopus 로고    scopus 로고
    • Sequence resources at the Candida Genome Database
    • Arnaud, M.B. et al. Sequence resources at the Candida Genome Database. Nucleic Acids Res. 35, D452-D456 (2007).
    • (2007) Nucleic Acids Res , vol.35
    • Arnaud, M.B.1
  • 22
    • 18444386817 scopus 로고    scopus 로고
    • Saccharomyces Genome Database
    • Issel-Tarver, L. et al. Saccharomyces Genome Database. Methods Enzymol 350, 329-346 (2002).
    • (2002) Methods Enzymol , vol.350 , pp. 329-346
    • Issel-Tarver, L.1
  • 23
    • 28844461287 scopus 로고    scopus 로고
    • Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. fumigatus and A. oryzae
    • Galagan, J.E. et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. fumigatus and A. oryzae. Nature 438, 1105-1115 (2005).
    • (2005) Nature , vol.438 , pp. 1105-1115
    • Galagan, J.E.1
  • 24
    • 22144452209 scopus 로고    scopus 로고
    • The Integr8 project-a resource for genomic and proteomic data
    • Pruess, M., Kersey, P. & Apweiler, R. The Integr8 project-a resource for genomic and proteomic data. In Silico Biol. 5, 179-185 (2005).
    • (2005) In Silico Biol , vol.5 , pp. 179-185
    • Pruess, M.1    Kersey, P.2    Apweiler, R.3
  • 25
    • 13444292428 scopus 로고    scopus 로고
    • The EMBL Nucleotide Sequence Database
    • Kanz, C. et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 33, D29-D33 (2005).
    • (2005) Nucleic Acids Res , vol.33
    • Kanz, C.1
  • 26
    • 33747500567 scopus 로고    scopus 로고
    • A genomic code for nucleosome positioning
    • Segal, E. et al. A genomic code for nucleosome positioning. Nature 442, 772-778 (2006).
    • (2006) Nature , vol.442 , pp. 772-778
    • Segal, E.1
  • 27
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright, F. The 'effective number of codons' used in a gene. Gene 87, 23-29 (1990).
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 28
    • 33747892409 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and inparalogs shared by multiple proteomes
    • Alexeyenko, A., Tamas, I., Liu, G. & Sonnhammer, E.L. Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Bioinformatics 22, e9-e15 (2006).
    • (2006) Bioinformatics , vol.22
    • Alexeyenko, A.1    Tamas, I.2    Liu, G.3    Sonnhammer, E.L.4
  • 29
    • 0036283136 scopus 로고    scopus 로고
    • Phylogeny and systematics of the fungi with special reference to the Ascomycota and Basidiomycota
    • Prillinger, H. et al. Phylogeny and systematics of the fungi with special reference to the Ascomycota and Basidiomycota. Chem. Immunol. 81, 207-295 (2002).
    • (2002) Chem. Immunol , vol.81 , pp. 207-295
    • Prillinger, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.