-
2
-
-
12944305786
-
Superfamily of plant, fungal and bacterial peroxidases
-
Welinder, K. G. (1992) Superfamily of plant, fungal and bacterial peroxidases. Curr. Opin. Struct. Biol. 2, 388-393.
-
(1992)
Curr. Opin. Struct. Biol
, vol.2
, pp. 388-393
-
-
Welinder, K.G.1
-
3
-
-
0021723457
-
Crystal structure of yeast cytochrome c peroxidase refined at 1,7-A resolution
-
Finzel, B. C., Poulos, T. L. and Kraut, J. (1984) Crystal structure of yeast cytochrome c peroxidase refined at 1,7-A resolution, J. Biol. Chem. 259, 13027-13036.
-
(1984)
J. Biol. Chem
, vol.259
, pp. 13027-13036
-
-
Finzel, B.C.1
Poulos, T.L.2
Kraut, J.3
-
4
-
-
0025824122
-
Molecular cloning and nucleotide sequence analysis of a cDNA encoding pea cytosolic ascorbate peroxidase
-
Mittler, R. and Zilinskas, B. A. (1991) Molecular cloning and nucleotide sequence analysis of a cDNA encoding pea cytosolic ascorbate peroxidase. FEBS Lett. 289, 257-259.
-
(1991)
FEBS Lett
, vol.289
, pp. 257-259
-
-
Mittler, R.1
Zilinskas, B.A.2
-
5
-
-
0021519023
-
2-requiring diarylpropane oxygenase from the white rot basidiomycete, Phanerochaete chrysosporium
-
2-requiring diarylpropane oxygenase from the white rot basidiomycete, Phanerochaete chrysosporium. Arch. Biochem. Biophys. 234, 353-362.
-
(1984)
Arch. Biochem. Biophys
, vol.234
, pp. 353-362
-
-
Gold, M.H.1
Kuwahara, M.2
Chiu, A.A.3
Glenn, J.K.4
-
6
-
-
0022389495
-
Purification and characterization of an. extracellular Mn(II)-dependent peroxidase from the lignin-degrading basidiomycete, Phonemchete chrysosporium
-
Glenn, J. K. and Gold, M. H. (1985) Purification and characterization of an. extracellular Mn(II)-dependent peroxidase from the lignin-degrading basidiomycete, Phonemchete chrysosporium. Arch. Biochem. Biophys. 242, 329-341.
-
(1985)
Arch. Biochem. Biophys
, vol.242
, pp. 329-341
-
-
Glenn, J.K.1
Gold, M.H.2
-
7
-
-
0033537844
-
Description of a versatile peroxidase in. the natural, degradation of lignin that has both manganese peroxidase and lignin peroxidase substrate interaction sites
-
Camarero, S., Sarker, S., Ruiz-Dueñas, R J., Martínez, M. J. and Martinez, A. T. (1999) Description of a versatile peroxidase in. the natural, degradation of lignin that has both manganese peroxidase and lignin peroxidase substrate interaction sites. J. Biol. Chem. 274, 10324-10330.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 10324-10330
-
-
Camarero, S.1
Sarker, S.2
Ruiz-Dueñas, R.J.3
Martínez, M.J.4
Martinez, A.T.5
-
8
-
-
33751539540
-
Complete decolorization of the anthraquinone dye Reactive blue 5 by the concerted action of two peroxidases from Thanatephorus cucumeris Dec .1
-
Sugano, Y., Matsushima, Y and Shoda, M. (2006) Complete decolorization of the anthraquinone dye Reactive blue 5 by the concerted action of two peroxidases from Thanatephorus cucumeris Dec .1, Appl. Microbiol. Biotechnol. 73, 862-871.
-
(2006)
Appl. Microbiol. Biotechnol
, vol.73
, pp. 862-871
-
-
Sugano, Y.1
Matsushima, Y.2
Shoda, M.3
-
9
-
-
0014010578
-
Peroxidase isozymes from horseradish roots. I. Isolation and physical properties
-
Shannon, L. M., Kay, E. and Lew, J. Y (1966) Peroxidase isozymes from horseradish roots. I. Isolation and physical properties. J. Biol. Chem. 241, 2166-2172.
-
(1966)
J. Biol. Chem
, vol.241
, pp. 2166-2172
-
-
Shannon, L.M.1
Kay, E.2
Lew, J.Y.3
-
10
-
-
0027416941
-
Unique reaction of a barley peroxidase with hydrogen peroxide
-
Rasmussen, C. B., Bakovic, M., Welinder, K. G and Dunford, H. B. (1993) Unique reaction of a barley peroxidase with hydrogen peroxide. FEBS Lett. 321, 102-105.
-
(1993)
FEBS Lett
, vol.321
, pp. 102-105
-
-
Rasmussen, C.B.1
Bakovic, M.2
Welinder, K.G.3
Dunford, H.B.4
-
11
-
-
0001388704
-
Biological chlorination. VI. Chloroperoxidase : A component of the β-ketoadipate chlorinase system
-
Shaw, P. D. and Hager, L. P. (1961) Biological chlorination. VI. Chloroperoxidase : a component of the β-ketoadipate chlorinase system. J. Biol. Chem. 236, .1626-1630.
-
(1961)
J. Biol. Chem
, vol.236
, pp. 1626-1630
-
-
Shaw, P.D.1
Hager, L.P.2
-
12
-
-
0029646104
-
The crystal structure of chloroperoxidase: A heme peroxidase-cytochrome P450 functional hybrid
-
Sundaramoorthy, M., Terner, J. and Poulos, T. L. (1995) The crystal structure of chloroperoxidase: a heme peroxidase-cytochrome P450 functional hybrid. Structure 3, 1367-1377.
-
(1995)
Structure
, vol.3
, pp. 1367-1377
-
-
Sundaramoorthy, M.1
Terner, J.2
Poulos, T.L.3
-
13
-
-
33845289270
-
Peroxisomes and aging
-
Terlecky, S. R., Koepke, J. I. and Walton, P. A. (2006) Peroxisomes and aging. Biochim. Biophys. Acta. 1763, 1749-1754.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 1749-1754
-
-
Terlecky, S.R.1
Koepke, J.I.2
Walton, P.A.3
-
14
-
-
44449162751
-
Oxidative stress in vascular disease: Causes, defense mechanisms and potential therapies
-
14
-
14 Förstermann, U. (2008) Oxidative stress in vascular disease: causes, defense mechanisms and potential therapies. Nat. Clin. Pract. Cardiovasc. Med. 5, 338-349.
-
(2008)
Nat. Clin. Pract. Cardiovasc. Med
, vol.5
, pp. 338-349
-
-
Förstermann, U.1
-
15
-
-
43049173503
-
Mammalian heme peroxidases: From molecular mechanisms to health implications
-
Davies, M. J., Hawkins, C. L., Pattison, D. I. and Rees, M. D. (2008) Mammalian heme peroxidases: from molecular mechanisms to health implications. Antioxid. Redox Signal. 10, 1199-1234.
-
(2008)
Antioxid. Redox Signal
, vol.10
, pp. 1199-1234
-
-
Davies, M.J.1
Hawkins, C.L.2
Pattison, D.I.3
Rees, M.D.4
-
16
-
-
42249089890
-
The phytogeny of the mammalian, heme peroxidases and the evolution of their diverse functions
-
Loughran, N. B., O'Connor, B., Ó'Fágáin, C. and O'Connell, M. J. (2008) The phytogeny of the mammalian, heme peroxidases and the evolution of their diverse functions. BMC Evol. Biol. 8, 101-115.
-
(2008)
BMC Evol. Biol
, vol.8
, pp. 101-115
-
-
Loughran, N.B.1
O'Connor, B.2
Ó'Fágáin, C.3
O'Connell, M.J.4
-
17
-
-
37549031745
-
DyP, a unique dye-decolorizing peroxidase, represents a novel heme peroxidase family: Asp171 replaces the distal histidine of classical peroxidases
-
Sugano, Y., Muramatsu, R., Ichiyanagi, A. Sato, T. and Shoda, M. (2007) DyP, a unique dye-decolorizing peroxidase, represents a novel heme peroxidase family: Asp171 replaces the distal histidine of classical peroxidases. J. Biol. Chem. 282, 36652-36658.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 36652-36658
-
-
Sugano, Y.1
Muramatsu, R.2
Ichiyanagi, A.3
Sato, T.4
Shoda, M.5
-
18
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L., Studholme, D. J., Yeats, C. and Eddy, S. R. (2004) The Pfam protein families database. Nucl. Acids Res. 32D, 138-141.
-
(2004)
Nucl. Acids Res
, vol.32 D
, pp. 138-141
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
19
-
-
0029092882
-
Characteristics of a newly isolated fungus. Geotrichum candidum Dec 1, which decolorizes various dyes
-
Kim, S. J., Ishikawa, K., Hirai, M. and Shoda, M. (1995) Characteristics of a newly isolated fungus. Geotrichum candidum Dec 1, which decolorizes various dyes. J. Ferment. Bioeng. 79, 601-607.
-
(1995)
J. Ferment. Bioeng
, vol.79
, pp. 601-607
-
-
Kim, S.J.1
Ishikawa, K.2
Hirai, M.3
Shoda, M.4
-
20
-
-
0345472013
-
Purification and characterization of a novel peroxidase from Geotrichum candidum Dec 1 involved in decolorization of dyes
-
Kim, S. J. and Shoda, M. (1999) Purification and characterization of a novel peroxidase from Geotrichum candidum Dec 1 involved in decolorization of dyes. Appl. Environ. Microbiol. 65, 1029-1035.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 1029-1035
-
-
Kim, S.J.1
Shoda, M.2
-
21
-
-
0026511373
-
Method to identify specific alleles of a Phanerochaete chrysosporium gene encoding lignin peroxidase
-
Gaskell, J., Vanden Wymelenberg, A., Stewart, P. and Cullen, D. (1992) Method to identify specific alleles of a Phanerochaete chrysosporium gene encoding lignin peroxidase. Appl. Environ. Microbiol. 58, 1379-1381.
-
(1992)
Appl. Environ. Microbiol
, vol.58
, pp. 1379-1381
-
-
Gaskell, J.1
Vanden Wymelenberg, A.2
Stewart, P.3
Cullen, D.4
-
22
-
-
36249016239
-
Purification, cloning and characterization of a novel peroxidase isozyme from sweetpotatoes (lpomoea batatas)
-
Rompell, A., Albers, M., Naseri, J. I., Gerdemann, C., BüldtKarentzopoulos, K., Jasper, B. and Krebs, B. (2007) Purification, cloning and characterization of a novel peroxidase isozyme from sweetpotatoes (lpomoea batatas). Biochim. Biophys. Acta. 1774, 1422-1430.
-
(2007)
Biochim. Biophys. Acta
, vol.1774
, pp. 1422-1430
-
-
Rompell, A.1
Albers, M.2
Naseri, J.I.3
Gerdemann, C.4
BüldtKarentzopoulos, K.5
Jasper, B.6
Krebs, B.7
-
23
-
-
0742324902
-
Horseradish peroxidase: A modern view of a classic enzyme
-
Veitch, N. C. (2004) Horseradish peroxidase: a modern view of a classic enzyme. Phytochemistry 65, 249-259.
-
(2004)
Phytochemistry
, vol.65
, pp. 249-259
-
-
Veitch, N.C.1
-
24
-
-
0033959566
-
Characterization of three new manganese peroxidase genes from the ligninolytic basidiomycete Ceriporiopsis subvermispora
-
Tello, M., Corsini, G., Larrondo, L. F., Salas, L., Lobos, S. and Vicña, R. (2000) Characterization of three new manganese peroxidase genes from the ligninolytic basidiomycete Ceriporiopsis subvermispora. Biochim. Biophys. Acta. .1490,137-144.
-
(2000)
Biochim. Biophys. Acta
, vol.1490
, pp. 137-144
-
-
Tello, M.1
Corsini, G.2
Larrondo, L.F.3
Salas, L.4
Lobos, S.5
Vicña, R.6
-
25
-
-
0032896638
-
Molecular characterization of a novel peroxidase isolated from the ligninolytic fungus Pleurotus eryngii
-
Ruiz-Dueñas, R J., Martínez, M. J. and Martínez, A. T. (1999) Molecular characterization of a novel peroxidase isolated from the ligninolytic fungus Pleurotus eryngii. Mol. Microbiol, 31, 223-235.
-
(1999)
Mol. Microbiol
, vol.31
, pp. 223-235
-
-
Ruiz-Dueñas, R.J.1
Martínez, M.J.2
Martínez, A.T.3
-
26
-
-
60949094155
-
Purification and characterization of two DyP isozymes from Thanatephorus cucumeris Dec 1 specifically expressed in an air-membrane surface bioreactor
-
in press
-
Shimokawa, T., Shoda, M. and Sugano, Y. Purification and characterization of two DyP isozymes from Thanatephorus cucumeris Dec 1 specifically expressed in an air-membrane surface bioreactor. J. Biosci, Bioeng. in press
-
J. Biosci, Bioeng
-
-
Shimokawa, T.1
Shoda, M.2
Sugano, Y.3
-
27
-
-
0032936257
-
cDNA cloning and genetic analysis of a novel decolorizing enzyme, peroxidase gene dyp from Geotrichum candidum Dec 1
-
Sugano, Y., Sasaki, K. and Shoda, M. (1999) cDNA cloning and genetic analysis of a novel decolorizing enzyme, peroxidase gene dyp from Geotrichum candidum Dec 1. J. Biosci. Bioeng. 87, 411-417.
-
(1999)
J. Biosci. Bioeng
, vol.87
, pp. 411-417
-
-
Sugano, Y.1
Sasaki, K.2
Shoda, M.3
-
28
-
-
0027241482
-
Monophyletic origins of the metazoa: An evolutionary link with fungi
-
Wainright, P. O., Hinkle, G., Sogin, M. L. and Stickel, S. K. (1993) Monophyletic origins of the metazoa: an evolutionary link with fungi. Science 260, 340-342.
-
(1993)
Science
, vol.260
, pp. 340-342
-
-
Wainright, P.O.1
Hinkle, G.2
Sogin, M.L.3
Stickel, S.K.4
-
29
-
-
0034127006
-
Efficient heterologous expression in Aspergillus oryzae of a unique dye-decolorizing peroxidase, DyP, of Geotrichum candidum Dec 1
-
Sugano, Y., Nakano, R., Sasaki, K. and Shoda, M. (2000) Efficient heterologous expression in Aspergillus oryzae of a unique dye-decolorizing peroxidase, DyP, of Geotrichum candidum Dec 1. Appl. Environ. Microbiol. 66, 1754-1758.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 1754-1758
-
-
Sugano, Y.1
Nakano, R.2
Sasaki, K.3
Shoda, M.4
-
30
-
-
0035697922
-
Efficient production of a heterologous peroxidase, DyP from Geotrichum candidum Dec .1, on solid-state culture of Aspergillus oryzae RD005
-
Sugano, Y., Matsuo, C. and Shoda, M. (2001) Efficient production of a heterologous peroxidase, DyP from Geotrichum candidum Dec .1, on solid-state culture of Aspergillus oryzae RD005. J. Biosci. Bioeng. 92, 594-597.
-
(2001)
J. Biosci. Bioeng
, vol.92
, pp. 594-597
-
-
Sugano, Y.1
Matsuo, C.2
Shoda, M.3
-
31
-
-
33947103077
-
Production of dye-decolorizing peroxidase (rDyP) from complex substrates by repeated-batch and fed-batch cultures of recombinant Aspergillus oryzae
-
Shakeri, M., Sugano, Y and Shoda, M. (2007) Production of dye-decolorizing peroxidase (rDyP) from complex substrates by repeated-batch and fed-batch cultures of recombinant Aspergillus oryzae. J. Biosci.Bioeng. 103, 129-134.
-
(2007)
J. Biosci.Bioeng
, vol.103
, pp. 129-134
-
-
Shakeri, M.1
Sugano, Y.2
Shoda, M.3
-
32
-
-
0029961704
-
Efficient expression of a Phanerochaete chrysosporium manganese peroxidase gene in Aspergillus oryzae
-
Stewart, P., Whitwam, R. E., Kersten, P. J., Cullen, D. and Tien, M. (1996) Efficient expression of a Phanerochaete chrysosporium manganese peroxidase gene in Aspergillus oryzae. Appl. Environ. Microbiol, 62, 860-864.
-
(1996)
Appl. Environ. Microbiol
, vol.62
, pp. 860-864
-
-
Stewart, P.1
Whitwam, R.E.2
Kersten, P.J.3
Cullen, D.4
Tien, M.5
-
33
-
-
0032504601
-
Expression of the lignin peroxidase H2 gene from Phanerochaete chrysosporium in Escherichia coli
-
Nie, G., Reading, N. S. and Aust S. D. (1998) Expression of the lignin peroxidase H2 gene from Phanerochaete chrysosporium in Escherichia coli. Biochem. Biophys. Res. Commun. 249, 146-150.
-
(1998)
Biochem. Biophys. Res. Commun
, vol.249
, pp. 146-150
-
-
Nie, G.1
Reading, N.S.2
Aust, S.D.3
-
35
-
-
4143083743
-
-
Sugano, Y., Ishii, Y. and Shoda, M. (2004) Role of H164 in a unique dye-decolorizing heme peroxidase DyP. Biochem, Biophys. Res. Commun. 322, 126-132.
-
Sugano, Y., Ishii, Y. and Shoda, M. (2004) Role of H164 in a unique dye-decolorizing heme peroxidase DyP. Biochem, Biophys. Res. Commun. 322, 126-132.
-
-
-
-
36
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schärfer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schärfer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
37
-
-
0038702590
-
Isolation and cDNA cloning of novel hydrogen peroxide-dependent phenol oxidase from, the basidiomycete Termitomyces albuminosus
-
Johjima, T., Ohkuma, M. and Kudo, T. (2003) Isolation and cDNA cloning of novel hydrogen peroxide-dependent phenol oxidase from, the basidiomycete Termitomyces albuminosus. Appl. Microbiol. Biotechnol. 61, 220-225.
-
(2003)
Appl. Microbiol. Biotechnol
, vol.61
, pp. 220-225
-
-
Johjima, T.1
Ohkuma, M.2
Kudo, T.3
-
38
-
-
38049120262
-
Novel peroxidases of Marasmius scorodonius degrade β-carotene
-
Scheibner, M., Hülsdau, B., Zelena, K., Nimtz, M., de Boer, L., Berger, R. G. and Zorn, H. (2008) Novel peroxidases of Marasmius scorodonius degrade β-carotene. Appl. Microbiol. Biotechnol, 77, 1241-1250.
-
(2008)
Appl. Microbiol. Biotechnol
, vol.77
, pp. 1241-1250
-
-
Scheibner, M.1
Hülsdau, B.2
Zelena, K.3
Nimtz, M.4
de Boer, L.5
Berger, R.G.6
Zorn, H.7
-
39
-
-
34248326376
-
Identification of a new member of the dye-decolorizing peroxidase family from Pleurotus ostreatus
-
Faraco, V., Piscitelli, A., Sannia, G. and Giardina, P. (2007) Identification of a new member of the dye-decolorizing peroxidase family from Pleurotus ostreatus. World J. Microbiol, Biotechnol, 23, 889-893.
-
(2007)
World J. Microbiol, Biotechnol
, vol.23
, pp. 889-893
-
-
Faraco, V.1
Piscitelli, A.2
Sannia, G.3
Giardina, P.4
-
40
-
-
34548809711
-
-
Zubieta, C., Krishna, S. S., Kapoor, M., Kozbiel, P., McMullan, D., Axelrod, H. L., Miller, M. D., Abdubek, P., Ambing, E., Astakhova, T., Carlton, D., Chiu, H-J., Clayton, T., Deller, M. C., Duan, L., Elsliger, M-A., Feuerhelm, J., Grzechnik, S. K., Hale, J., Hampton, E., Han, G W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kumar, A., Marciano, D., Morse, A. T., Nigoghossian, E., Okach, L., Oommachen, S., Reyes, R., Rife, C. L., Schimmel, P., van den Bedem, H., Weekes, D., White, A., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A. and Wilson, I. A. (2007) Crystal structures of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme binding motif. Proteins 69, 223-233.
-
Zubieta, C., Krishna, S. S., Kapoor, M., Kozbiel, P., McMullan, D., Axelrod, H. L., Miller, M. D., Abdubek, P., Ambing, E., Astakhova, T., Carlton, D., Chiu, H-J., Clayton, T., Deller, M. C., Duan, L., Elsliger, M-A., Feuerhelm, J., Grzechnik, S. K., Hale, J., Hampton, E., Han, G W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kumar, A., Marciano, D., Morse, A. T., Nigoghossian, E., Okach, L., Oommachen, S., Reyes, R., Rife, C. L., Schimmel, P., van den Bedem, H., Weekes, D., White, A., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A. and Wilson, I. A. (2007) Crystal structures of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme binding motif. Proteins 69, 223-233.
-
-
-
-
41
-
-
34548810845
-
-
Zubieta, C., Joseph, R., Krishna, S. S., McMullan, D., Kapoor, M., Axelrod, H. L., Miller, M. D., Abdubek, P., Acosta, C., Astakhova, T., Carlton, D., Chiu, H-J., Clayton, T., Deller, M. C., Duan, L., Elias, Y., Elsliger, M-A, Feuerhelm, J., Grzechnik, S. K., Hale, J., Han, G. W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kozbial, P., Kumar, A., Marciano, D., Morse, A. T., Murphy, K. D., Nigoghossian, E., Okach, L., Oommachen, S., Reyes, R., Rife, C. L., Schimmel, P., Trout, C. V., van den Bedem, H., Weekes, D., White, A., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A. and Wilson, I. A. (2007) Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA. Proteins 69, 234-243.
-
Zubieta, C., Joseph, R., Krishna, S. S., McMullan, D., Kapoor, M., Axelrod, H. L., Miller, M. D., Abdubek, P., Acosta, C., Astakhova, T., Carlton, D., Chiu, H-J., Clayton, T., Deller, M. C., Duan, L., Elias, Y., Elsliger, M-A, Feuerhelm, J., Grzechnik, S. K., Hale, J., Han, G. W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kozbial, P., Kumar, A., Marciano, D., Morse, A. T., Murphy, K. D., Nigoghossian, E., Okach, L., Oommachen, S., Reyes, R., Rife, C. L., Schimmel, P., Trout, C. V., van den Bedem, H., Weekes, D., White, A., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A. and Wilson, I. A. (2007) Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA. Proteins 69, 234-243.
-
-
-
-
42
-
-
33744917575
-
YcdB from Escherichia coli reveals a novel class of Tat-dependently translocated hemoproteins
-
Sturm, A., Schierhorn, A., Lindenstrauss, U., Lilie, H. and Brtiser, T. (2006) YcdB from Escherichia coli reveals a novel class of Tat-dependently translocated hemoproteins. (2006) J. Biol. Chem. 281, .13972-13978.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 13972-13978
-
-
Sturm, A.1
Schierhorn, A.2
Lindenstrauss, U.3
Lilie, H.4
Brtiser, T.5
-
43
-
-
0042770348
-
Cleavage of β,β-carotene to flavor compounds by fungi
-
Zorn, H., Langhoff, S., Scheibner, M. and Berger, R. G. (2003) Cleavage of β,β-carotene to flavor compounds by fungi. Appl. Microbiol. Biotechnol. 62, 331-336.
-
(2003)
Appl. Microbiol. Biotechnol
, vol.62
, pp. 331-336
-
-
Zorn, H.1
Langhoff, S.2
Scheibner, M.3
Berger, R.G.4
-
44
-
-
4143128834
-
-
Sato, T., Hara, S., Matsui, T., Sazaki, G., Saijo, S., Ganbe, N., Tanaka, H1 Sugano, Y and Shoda, M. (2004) A unique dye-decolorizing peroxidase, DyP, from Thanatephorus cucumeris Dec 1: heterologous expression, crystallization and preliminary X-ray analysis. Acta Crystalogr. D60, 149-152.
-
Sato, T., Hara, S., Matsui, T., Sazaki, G., Saijo, S., Ganbe, N., Tanaka, H1 Sugano, Y and Shoda, M. (2004) A unique dye-decolorizing peroxidase, DyP, from Thanatephorus cucumeris Dec 1: heterologous expression, crystallization and preliminary X-ray analysis. Acta Crystalogr. D60, 149-152.
-
-
-
-
45
-
-
0029785147
-
Mapping the protein universe
-
Holm, L. and Sander, C. (1996) Mapping the protein universe. Science 273, 595-603.
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
46
-
-
0031573415
-
Comparison of DNA sequences and protein sequences
-
Pearson, W. R., Wood, T., Zhang, Z. and Miller, W. (1997) Comparison of DNA sequences and protein sequences. Genomics 46, 24-36.
-
(1997)
Genomics
, vol.46
, pp. 24-36
-
-
Pearson, W.R.1
Wood, T.2
Zhang, Z.3
Miller, W.4
-
47
-
-
21344463375
-
Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8
-
Ebihara, A., Okamoto, A., Kousumi, Y., Yamamoto, H., Masui, R., Ueyama, N., Yokoyama, S. and Kuramitsu, S. (2005) Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8. J. Struct. Funct. Genomics 6, 21-32.
-
(2005)
J. Struct. Funct. Genomics
, vol.6
, pp. 21-32
-
-
Ebihara, A.1
Okamoto, A.2
Kousumi, Y.3
Yamamoto, H.4
Masui, R.5
Ueyama, N.6
Yokoyama, S.7
Kuramitsu, S.8
-
48
-
-
33846033400
-
CDD: A conserved domain database for interactive domain family analysis
-
Marchler-Bauer, A., Anderson, J. B., Derbyshire, M. K., DeWeese-Scott, C., Gonzales, N. R., Gwadz, M., Hao, L., He, S., Hurwitz, D. I., Jackson, J. D., Ke, Z., Krylov, D., Lanczycki, C. J., Libert, C. A., Liu, C., Lu, F., Lu, S., Marchler, G. H., Mullokanodov, M., Song, J. S., Thanki, N., Yamashita, R. A., Yin, J. J., Zhang, D. and Bryant, S. H. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35, D237-240.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Derbyshire, M.K.3
DeWeese-Scott, C.4
Gonzales, N.R.5
Gwadz, M.6
Hao, L.7
He, S.8
Hurwitz, D.I.9
Jackson, J.D.10
Ke, Z.11
Krylov, D.12
Lanczycki, C.J.13
Libert, C.A.14
Liu, C.15
Lu, F.16
Lu, S.17
Marchler, G.H.18
Mullokanodov, M.19
Song, J.S.20
Thanki, N.21
Yamashita, R.A.22
Yin, J.J.23
Zhang, D.24
Bryant, S.H.25
more..
-
49
-
-
0027423563
-
Bacillus subtilis genome project: Cloning and sequencing of the 97 kb region from 325 degrees to 333 degrees
-
Glaser, P., Kunst, F., Arnaud, M., Coudart, M. P., Gonzales, W., Hullo. M. F., Ionescu, M., Lubochinsky, B., Marcelino, L., Moszer, I., Presecan, E., Santana, M., Schneider, E., Schweizer, J., Vertes, A., Rapoport, G. and Danchin, A. (1993) Bacillus subtilis genome project: cloning and sequencing of the 97 kb region from 325 degrees to 333 degrees. Mol. Microbiol. 10, 371-384.
-
(1993)
Mol. Microbiol
, vol.10
, pp. 371-384
-
-
Glaser, P.1
Kunst, F.2
Arnaud, M.3
Coudart, M.P.4
Gonzales, W.5
Hullo, M.F.6
Ionescu, M.7
Lubochinsky, B.8
Marcelino, L.9
Moszer, I.10
Presecan, E.11
Santana, M.12
Schneider, E.13
Schweizer, J.14
Vertes, A.15
Rapoport, G.16
Danchin, A.17
-
50
-
-
0034832681
-
Expression and functional analysis of a gene cluster involved in the synthesis of decaprenoxanthin reveals the mechanisms for C50 carotenoid formation
-
Krubasik, P., Kobayashi, M. and Sandmann, G. (2001) Expression and functional analysis of a gene cluster involved in the synthesis of decaprenoxanthin reveals the mechanisms for C50 carotenoid formation. Eur. J. Biochem. 286, 3702-3708.
-
(2001)
Eur. J. Biochem
, vol.286
, pp. 3702-3708
-
-
Krubasik, P.1
Kobayashi, M.2
Sandmann, G.3
-
51
-
-
13044313472
-
-
White, O., Eisen, J. A., Heidelberg, J. F., Hickey, E. K., Peterson, J. D., Dodson, R. J., Haft, D. H., Gwinn, M. L., Nelson, W. C., Richardson, D. L., Moffat, K. S., Qin, H., Jiang, L., Pamphile, W., Crosby, M., Shen, M., Vamathevan, J. J., Lam, P., McDonald, L., Utterback, T., Zalewski, C., Makarova, K. S., Aravind, L., Daly, M. J., Minton, K. W., Fleischmann, R. D., Ketchum, K. A., Nelson, K. E., Salzberg, S., Smith, H. O., Venter, J. C. and Fraser, C. M. (1999) Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286, 1571-1577.
-
White, O., Eisen, J. A., Heidelberg, J. F., Hickey, E. K., Peterson, J. D., Dodson, R. J., Haft, D. H., Gwinn, M. L., Nelson, W. C., Richardson, D. L., Moffat, K. S., Qin, H., Jiang, L., Pamphile, W., Crosby, M., Shen, M., Vamathevan, J. J., Lam, P., McDonald, L., Utterback, T., Zalewski, C., Makarova, K. S., Aravind, L., Daly, M. J., Minton, K. W., Fleischmann, R. D., Ketchum, K. A., Nelson, K. E., Salzberg, S., Smith, H. O., Venter, J. C. and Fraser, C. M. (1999) Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286, 1571-1577.
-
-
-
-
52
-
-
0035950182
-
Complete genome sequence of Salmonella enterica serovar Typhimurium. LT2
-
McClelland, M., Sanderson, K. E., Spieth, J., Clifton, S. W., Latreille, P., Courtney, L., Porwollik, S., Ali, J., Dante, M., Du, F., Hou, S., Layman, D., Leonard, S., Nguyen, G., Scott, K., Holmes, A., Grewal, N., Mulvaney, E., Ryan, E., Sun, H., Florea, L., Miller, W., Stoneking, T., Nhan, M., Waterston, R. and Wilson, R. K. (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium. LT2. Nature 413, 852-856.
-
(2001)
Nature
, vol.413
, pp. 852-856
-
-
McClelland, M.1
Sanderson, K.E.2
Spieth, J.3
Clifton, S.W.4
Latreille, P.5
Courtney, L.6
Porwollik, S.7
Ali, J.8
Dante, M.9
Du, F.10
Hou, S.11
Layman, D.12
Leonard, S.13
Nguyen, G.14
Scott, K.15
Holmes, A.16
Grewal, N.17
Mulvaney, E.18
Ryan, E.19
Sun, H.20
Florea, L.21
Miller, W.22
Stoneking, T.23
Nhan, M.24
Waterston, R.25
Wilson, R.K.26
more..
-
53
-
-
0030606602
-
-
Oshima, T., Aiba, H., Baba, T., Fujita, K., Hayashi, K., Honjo, A., Ikeomoto, K., Inada, T., Itoh, T., Kajihara, M., Kanai, K., Kashimoto, K., Kimura, S., Kitagawa, M., Makino, K., Masuda, S., Miki, T., Mizobuchi, K., Mori, H., Motomura, K., Nakamura, Y., Nashimoto, H., Nishio, Y., Saito, N., Sampei, G., Seki, Y., Tagami, H., Takemoto, K., Wada, C., Yamamoto, Y., Yano, M. and Horiuchi, T. (1996) A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 3, 137-155.
-
Oshima, T., Aiba, H., Baba, T., Fujita, K., Hayashi, K., Honjo, A., Ikeomoto, K., Inada, T., Itoh, T., Kajihara, M., Kanai, K., Kashimoto, K., Kimura, S., Kitagawa, M., Makino, K., Masuda, S., Miki, T., Mizobuchi, K., Mori, H., Motomura, K., Nakamura, Y., Nashimoto, H., Nishio, Y., Saito, N., Sampei, G., Seki, Y., Tagami, H., Takemoto, K., Wada, C., Yamamoto, Y., Yano, M. and Horiuchi, T. (1996) A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 3, 137-155.
-
-
-
-
54
-
-
9644284619
-
Two minimal Tat translocases in Bacillus
-
Jongbloed, J. D., Grieger, U., Antelmann, H., Hecker, M., Nijland, R., Bron, S. and van Dijl, J. M. (2004) Two minimal Tat translocases in Bacillus. Mol. Microbiol., 54, 1319-1325.
-
(2004)
Mol. Microbiol
, vol.54
, pp. 1319-1325
-
-
Jongbloed, J.D.1
Grieger, U.2
Antelmann, H.3
Hecker, M.4
Nijland, R.5
Bron, S.6
van Dijl, J.M.7
-
55
-
-
0037203829
-
Genome sequence of the plant pathogen Ralstonia solanacearum
-
Salanoubat, M., Genin, S., Artiguenave, F., Gouzy, J., Mangenot, S., Arlat, M., Billault, A., Borttier, P., Camus, J. C., Cattolico, L., Chandler, M., Choisne, N., Claudel-Renard, C., Cunnac, S., Démange, N., Gaspin, C, Lavie, M., Moisan, A., Robert, C., Saurin, W., Schiex, T., Siguier, P., Thébault, P., Whalen, M., Wincker, P., Levy, M., Weissenbach, J. and Boucher, C. A. (2002) Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415, 497-502.
-
(2002)
Nature
, vol.415
, pp. 497-502
-
-
Salanoubat, M.1
Genin, S.2
Artiguenave, F.3
Gouzy, J.4
Mangenot, S.5
Arlat, M.6
Billault, A.7
Borttier, P.8
Camus, J.C.9
Cattolico, L.10
Chandler, M.11
Choisne, N.12
Claudel-Renard, C.13
Cunnac, S.14
Démange, N.15
Gaspin, C.16
Lavie, M.17
Moisan, A.18
Robert, C.19
Saurin, W.20
Schiex, T.21
Siguier, P.22
Thébault, P.23
Whalen, M.24
Wincker, P.25
Levy, M.26
Weissenbach, J.27
Boucher, C.A.28
more..
-
56
-
-
0030722626
-
-
Settles, A.M.,Yonetani, A., Baron, A., Bush, D. R., Cline, K. and Martienssen, R. (1997) Sec-independent protein translocation by the maize Hcf106 protein. Science 278, 1467-1470.
-
Settles, A.M.,Yonetani, A., Baron, A., Bush, D. R., Cline, K. and Martienssen, R. (1997) Sec-independent protein translocation by the maize Hcf106 protein. Science 278, 1467-1470.
-
-
-
-
57
-
-
0032478550
-
A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins
-
Weiner, J. H., Bilous, P. T., Shaw, G.M., Lubitz, S. P., Frost, L., Thomas,G.H., Cole, J.A. and Turner,R. J. (1998) A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins. Cell 93, 93-101.
-
(1998)
Cell
, vol.93
, pp. 93-101
-
-
Weiner, J.H.1
Bilous, P.T.2
Shaw, G.M.3
Lubitz, S.P.4
Frost, L.5
Thomas, G.H.6
Cole, J.A.7
Turner, R.J.8
-
58
-
-
18844442890
-
The Tat pathway in bacteria and chloroplasts (review)
-
Müller, M. and Klösgen R. B. (2005) The Tat pathway in bacteria and chloroplasts (review). Mol. Membr. Biol. 22, 113-121.
-
(2005)
Mol. Membr. Biol
, vol.22
, pp. 113-121
-
-
Müller, M.1
Klösgen, R.B.2
-
59
-
-
0034995184
-
The structural basis of protein targeting and translocation in bacteria
-
Driessen, A. J., Manting, E. H. and van der Does, C. (2001) The structural basis of protein targeting and translocation in bacteria. Nature Struct. Biol. 8, 492-498.
-
(2001)
Nature Struct. Biol
, vol.8
, pp. 492-498
-
-
Driessen, A.J.1
Manting, E.H.2
van der Does, C.3
-
60
-
-
0029979607
-
Common principles of protein translocation across membranes
-
Schatz, G. and Dobberstein, B. (1996) Common principles of protein translocation across membranes. Science 271, 1519-1526.
-
(1996)
Science
, vol.271
, pp. 1519-1526
-
-
Schatz, G.1
Dobberstein, B.2
-
61
-
-
0027450561
-
The complete general secretory pathway in gram-negative bacteria
-
Pugsley,A. P. (1993) The complete general secretory pathway in gram-negative bacteria. Microbiol. Rev. 57, 50 -108.
-
(1993)
Microbiol. Rev
, vol.57
, pp. 50-108
-
-
Pugsley, A.P.1
-
62
-
-
0024284998
-
Manganese peroxidase from the basidiomycete Phanerochaete chrysosporium: Spectral characterization of the oxidized states and the catalytic cycle
-
Wariishi, H., Akileswaran, L. and Gold, M. H. (1988) Manganese peroxidase from the basidiomycete Phanerochaete chrysosporium: spectral characterization of the oxidized states and the catalytic cycle. Biochemistry 27, 5365-5370.
-
(1988)
Biochemistry
, vol.27
, pp. 5365-5370
-
-
Wariishi, H.1
Akileswaran, L.2
Gold, M.H.3
-
63
-
-
27644552270
-
Versatile peroxidase oxidation of high redox potential aromatic compounds: Site-directed mutagenesis, spectroscopic and crystallographic investigation of three longrange electron transfer pathways
-
Pérez-Boada, M., Ruiz-Dueñas, R J., Pogni, R., Basosi, R., Choinowski, T., Martínez, M. J., Piontek, K. and Martínez, A. T. (2005) Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three longrange electron transfer pathways J. Mol. Biol. 354, 385-402.
-
(2005)
J. Mol. Biol
, vol.354
, pp. 385-402
-
-
Pérez-Boada, M.1
Ruiz-Dueñas, R.J.2
Pogni, R.3
Basosi, R.4
Choinowski, T.5
Martínez, M.J.6
Piontek, K.7
Martínez, A.T.8
-
64
-
-
0022522916
-
Spectral characterization of the oxidized states of lignin peroxidase, an extracellular heme enzyme from the white rot basidiomycete Phanerochaete chrysosporium
-
Renganathan, V. and Gold, M. H. (1986) Spectral characterization of the oxidized states of lignin peroxidase, an extracellular heme enzyme from the white rot basidiomycete Phanerochaete chrysosporium. Biochemistry 25, 1626-1631.
-
(1986)
Biochemistry
, vol.25
, pp. 1626-1631
-
-
Renganathan, V.1
Gold, M.H.2
-
65
-
-
0034921274
-
Basic and applied aspects in the microbial degradation of azo dyes
-
Stolz, A. (2001) Basic and applied aspects in the microbial degradation of azo dyes. Appl. Microbiol. Biotechnol. 56, 69-80.
-
(2001)
Appl. Microbiol. Biotechnol
, vol.56
, pp. 69-80
-
-
Stolz, A.1
-
66
-
-
33646181980
-
Recent advances in azo dye degrading enzyme research
-
Chen, H. (2006) Recent advances in azo dye degrading enzyme research. Curr. Protein Pept. Sci. 7, 101-111.
-
(2006)
Curr. Protein Pept. Sci
, vol.7
, pp. 101-111
-
-
Chen, H.1
-
67
-
-
0037495212
-
Decolorization of azo dye by the white-rot basidiomycete Phanerochaete sordida and by its manganese peroxidase
-
Harazono, K., Watanabe, Y and Nakamura, K. (2003) Decolorization of azo dye by the white-rot basidiomycete Phanerochaete sordida and by its manganese peroxidase. J Biosci Bioeng. 95, 455-459.
-
(2003)
J Biosci Bioeng
, vol.95
, pp. 455-459
-
-
Harazono, K.1
Watanabe, Y.2
Nakamura, K.3
-
68
-
-
0029040817
-
Lignin peroxidase catalyzed oxidation of sulfonated azo dyes generates novel sulfophenyl hydroperoxides
-
Chivukula, M., Spadaro, J. T. and Renganathan, V. (1995) Lignin peroxidase catalyzed oxidation of sulfonated azo dyes generates novel sulfophenyl hydroperoxides. Biochemistry 34, 7765-7772.
-
(1995)
Biochemistry
, vol.34
, pp. 7765-7772
-
-
Chivukula, M.1
Spadaro, J.T.2
Renganathan, V.3
-
69
-
-
0020568668
-
Decolorization of several polymeric dyes by the lignin-degrading basidiomycete Phanerochaete chrysosporium
-
Glenn, J. K. and Gold, M. H. (1983) Decolorization of several polymeric dyes by the lignin-degrading basidiomycete Phanerochaete chrysosporium, Appl. Environ. Microbiol. 45, 1741-1747.
-
(1983)
Appl. Environ. Microbiol
, vol.45
, pp. 1741-1747
-
-
Glenn, J.K.1
Gold, M.H.2
-
70
-
-
0028202436
-
New pathway for degradation of sulfonated azo dyes by microbial peroxidases of Phanerochaete chrysosporium and Streptomyces chromofuscus
-
Goszczynski, S., Paszczynski, A., Pasti-Grigsby, M. B., Crawford, R. L. and Crawford, D. L. (1994) New pathway for degradation of sulfonated azo dyes by microbial peroxidases of Phanerochaete chrysosporium and Streptomyces chromofuscus. J. Bacteriol. 176, 1339-1347.
-
(1994)
J. Bacteriol
, vol.176
, pp. 1339-1347
-
-
Goszczynski, S.1
Paszczynski, A.2
Pasti-Grigsby, M.B.3
Crawford, R.L.4
Crawford, D.L.5
-
71
-
-
0027375222
-
Decolorization of azo, triphenyl methane, heterocyclic, and polymeric dyes by lignin peroxidase isozymes from Phanerochaete chrysosporium
-
Ollikka, P., Alhonmäki, K., Leppänen, V. M., Glumoff, T., Raijola, T. and Suominen, I. (1993) Decolorization of azo, triphenyl methane, heterocyclic, and polymeric dyes by lignin peroxidase isozymes from Phanerochaete chrysosporium. Appl. Environ. Microbiol. 59, 4010-4016.
-
(1993)
Appl. Environ. Microbiol
, vol.59
, pp. 4010-4016
-
-
Ollikka, P.1
Alhonmäki, K.2
Leppänen, V.M.3
Glumoff, T.4
Raijola, T.5
Suominen, I.6
-
72
-
-
0026352981
-
Relationship between the abilities of streptomycetes to decolorize three anthrontype dyes and to degrade lignocellulose
-
Pasti, M. B. and Crawford, D. L. (1991) Relationship between the abilities of streptomycetes to decolorize three anthrontype dyes and to degrade lignocellulose. Can. J. Microbiol. 37, 902-907.
-
(1991)
Can. J. Microbiol
, vol.37
, pp. 902-907
-
-
Pasti, M.B.1
Crawford, D.L.2
-
73
-
-
0028971097
-
2-dependent ligninolytic activity of the white rot fungus Pleurotus ostreatus in the decolorization of Remazol brilliant blue R
-
2-dependent ligninolytic activity of the white rot fungus Pleurotus ostreatus in the decolorization of Remazol brilliant blue R. Appl. Environ. Microbiol. 61, 39. 19-3927.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, Issue.39
, pp. 19-3927
-
-
Vyas, B.R.1
Molitoris, H.P.2
-
74
-
-
0035909811
-
Peroxidase- and nitrite-dependent metabolism of the anthracycline anticancer agents daunorubicin and doxorubicin
-
Reszka, K. J., McCormick, M. L. and Britigan, B. E. (2001) Peroxidase- and nitrite-dependent metabolism of the anthracycline anticancer agents daunorubicin and doxorubicin. Biochemistry 40, 15349-15361.
-
(2001)
Biochemistry
, vol.40
, pp. 15349-15361
-
-
Reszka, K.J.1
McCormick, M.L.2
Britigan, B.E.3
-
75
-
-
21244432233
-
Effects of peroxidase substrates on the Amplex red/ peroxidase assay: Antioxidant properties of anthracyclines
-
Reszka, K. J., Wagner, B. A., Burns, C. P. and Britigan, B. E. (2005) Effects of peroxidase substrates on the Amplex red/ peroxidase assay: antioxidant properties of anthracyclines. Anal. Biochem. 342, 327-337.
-
(2005)
Anal. Biochem
, vol.342
, pp. 327-337
-
-
Reszka, K.J.1
Wagner, B.A.2
Burns, C.P.3
Britigan, B.E.4
-
76
-
-
0033825180
-
Oxidation of hydroquinone, 2,3-dimethylhydroquinone and 2,3,5-trimethylhydroqui.none by human myeloperoxidase
-
Burner, U., Krapfenbauer, G., Furtmüller, P. G., Regelsberger, G. and Obinger, C. (2000) Oxidation of hydroquinone, 2,3-dimethylhydroquinone and 2,3,5-trimethylhydroqui.none by human myeloperoxidase. Redox Rep. 5, 185-190.
-
(2000)
Redox Rep
, vol.5
, pp. 185-190
-
-
Burner, U.1
Krapfenbauer, G.2
Furtmüller, P.G.3
Regelsberger, G.4
Obinger, C.5
-
77
-
-
67349200794
-
-
Sugano, Y., Matsushima, Y., Tsuchiya, K., Aoki, H., Hirai, M. and Shoda, M. Degradation pathway of an anthraquinone dye catalyzed by a unique peroxidase DyP from Thanatephorus cucumeris Dec .1, Biodegradation. DOI:10.1007/s10532-008-9234-y
-
Sugano, Y., Matsushima, Y., Tsuchiya, K., Aoki, H., Hirai, M. and Shoda, M. Degradation pathway of an anthraquinone dye catalyzed by a unique peroxidase DyP from Thanatephorus cucumeris Dec .1, Biodegradation. DOI:10.1007/s10532-008-9234-y
-
-
-
-
78
-
-
1242272119
-
Oxidative degradation, of cardiotoxie anticancer anthracyclines to phthalic acids. Novel function. of ferrylmyoglobin
-
Cartoni, A., Menna, P., Salvatorelli, E., Braghiroli, D. Giampietro, R. Animati, F., Urbani, A., Del Boecio, P. and Minotti, G. (2004) Oxidative degradation, of cardiotoxie anticancer anthracyclines to phthalic acids. Novel function. of ferrylmyoglobin. J. Biol, Chem. 279, 5088-5099.
-
(2004)
J. Biol, Chem
, vol.279
, pp. 5088-5099
-
-
Cartoni, A.1
Menna, P.2
Salvatorelli, E.3
Braghiroli, D.4
Giampietro, R.5
Animati, F.6
Urbani, A.7
Del Boecio, P.8
Minotti, G.9
-
79
-
-
0035725979
-
-
Goméz-Toribio, V., Martínez, A. T., Martínez, M. J. and Guillén, R (2001) Oxidation of hydroquinones by the versatile ligninolytic peroxidase from Pleurotus eryngii, Eur. J. Bichem, 268, 4787-4793.
-
Goméz-Toribio, V., Martínez, A. T., Martínez, M. J. and Guillén, R (2001) Oxidation of hydroquinones by the versatile ligninolytic peroxidase from Pleurotus eryngii, Eur. J. Bichem, 268, 4787-4793.
-
-
-
-
80
-
-
0026701776
-
Oxidation of hydroquinone by myeloperoxidase: Mechanism of stimulation by benzoquinone
-
Kettle, A. J. and Winterbourn, C. C. (1992) Oxidation of hydroquinone by myeloperoxidase: mechanism of stimulation by benzoquinone. J. Biol. Chem. 267, 8319-8324.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 8319-8324
-
-
Kettle, A.J.1
Winterbourn, C.C.2
-
81
-
-
1242270508
-
Purification and characterization of laccase from the white-rot fungus Daedalea quercina and decolorization of synthetic dyes by the enzyme
-
Baldrian, P. (2004) Purification and characterization of laccase from the white-rot fungus Daedalea quercina and decolorization of synthetic dyes by the enzyme. Appl, Microbiol. Biotechnol. 63, 560-563.
-
(2004)
Appl, Microbiol. Biotechnol
, vol.63
, pp. 560-563
-
-
Baldrian, P.1
-
82
-
-
29544447323
-
Contribution of manganese peroxidase and lacease to dye decoloration by Trametes versicolor
-
Champagne, P. P. and Ramsay, J. A. (2005) Contribution of manganese peroxidase and lacease to dye decoloration by Trametes versicolor. Appl, Microbiol. Biotechnol, 69, 276-285.
-
(2005)
Appl, Microbiol. Biotechnol
, vol.69
, pp. 276-285
-
-
Champagne, P.P.1
Ramsay, J.A.2
-
83
-
-
0036382007
-
Redox-mediated decolorization of synthetic dyes by fungal laccases
-
Claus, H., Faber, G. and König, H. (2002) Redox-mediated decolorization of synthetic dyes by fungal laccases. Appl. Microbiol. Biotechnol. 59, 672-678.
-
(2002)
Appl. Microbiol. Biotechnol
, vol.59
, pp. 672-678
-
-
Claus, H.1
Faber, G.2
König, H.3
-
84
-
-
2942633046
-
Biodecolorization of azo, anthraquinonic and triphenylmethane dyes by white-rot fungi and a laccase-secreting engineered strain
-
Liu, W., Chao, Y., Yang, X., Bao, H. and Qian, S. (2004) Biodecolorization of azo, anthraquinonic and triphenylmethane dyes by white-rot fungi and a laccase-secreting engineered strain. J. Ind. Microbiol. Biotechnol. 31,127-132.
-
(2004)
J. Ind. Microbiol. Biotechnol
, vol.31
, pp. 127-132
-
-
Liu, W.1
Chao, Y.2
Yang, X.3
Bao, H.4
Qian, S.5
-
85
-
-
0024004050
-
A novel anthraquinone ring cleavage enzyme from Aspergillus terreus
-
Fujii, I., Ebizuka, Y and Sankawa, U. (1988) A novel anthraquinone ring cleavage enzyme from Aspergillus terreus. J. Biochem. 103, 878-883.
-
(1988)
J. Biochem
, vol.103
, pp. 878-883
-
-
Fujii, I.1
Ebizuka, Y.2
Sankawa, U.3
-
86
-
-
0017133108
-
Mössbauer spectroscopic study of compound ES of cytochrome c peroxidase
-
Lang, G., Spartalian, K. and Yonetani, T. (1976) Mössbauer spectroscopic study of compound ES of cytochrome c peroxidase. Biochim. Biophys. Acta 451, 250-258.
-
(1976)
Biochim. Biophys. Acta
, vol.451
, pp. 250-258
-
-
Lang, G.1
Spartalian, K.2
Yonetani, T.3
-
87
-
-
0019887437
-
Evidence for heme pi cation radical species in compound I of horseradish peroxidase and catalase
-
Browlett, W. R. and Stillman, M. J. (1981) Evidence for heme pi cation radical species in compound I of horseradish peroxidase and catalase. Biochim. Biophys. Acta 660, 1-7.
-
(1981)
Biochim. Biophys. Acta
, vol.660
, pp. 1-7
-
-
Browlett, W.R.1
Stillman, M.J.2
-
88
-
-
0019320452
-
Formation of porphyrin pi cation radical in zinc-substituted horseradish peroxidase
-
Kaneko, Y., Tamura, M. and Yamazaki, I. (1980) Formation of porphyrin pi cation radical in zinc-substituted horseradish peroxidase. Biochemistry 19, 5795-5799.
-
(1980)
Biochemistry
, vol.19
, pp. 5795-5799
-
-
Kaneko, Y.1
Tamura, M.2
Yamazaki, I.3
-
89
-
-
33646483632
-
The role of the heme propionates in heme biochemistry
-
Gualler, V. and Olsen, B. (2006) The role of the heme propionates in heme biochemistry. J. Inorg. Biochem. 100, 755-760.
-
(2006)
J. Inorg. Biochem
, vol.100
, pp. 755-760
-
-
Gualler, V.1
Olsen, B.2
-
90
-
-
0035958073
-
Roles of water in heme peroxidase and catalase mechanisms
-
Jones, P. (2001) Roles of water in heme peroxidase and catalase mechanisms. J. Biol. Chem. 276, 13791-13796.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 13791-13796
-
-
Jones, P.1
-
91
-
-
1842426962
-
Peroxide-utilizing biocatalysts: Structural and functional diversity of heme-containing enzymes
-
Matsunaga, I. and Shiro, Y. (2004) Peroxide-utilizing biocatalysts: structural and functional diversity of heme-containing enzymes. Curr. Opin. Chem. Biol. 8, 127-132.
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 127-132
-
-
Matsunaga, I.1
Shiro, Y.2
-
92
-
-
0030879682
-
Molecular cloning and expression of fatty acid α-hydroxylase from Sphingomonas paucimobilis
-
Matsunaga, I., Yokotani, N., Gotoh, O., Kusunose, E., Yamada, M. and Ichihara, K.. (1997) Molecular cloning and expression of fatty acid α-hydroxylase from Sphingomonas paucimobilis. J. Biol. Chem. 272, 23592-23596.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 23592-23596
-
-
Matsunaga, I.1
Yokotani, N.2
Gotoh, O.3
Kusunose, E.4
Yamada, M.5
Ichihara, K.6
-
94
-
-
0037646516
-
Substrate recognition and molecular mechanism of fatty acid hydroxylation by cytochrome P450 from Bacillus subtilis. Crystallographic, spectroscopic, and mutational studies
-
Lee, D. S., Yamada, A., Sugimoto, H., Matsunaga, I., Ogura, H., Ichihara, K. Adachi, S., Park, S.Y. and Shiro, Y. (2003) Substrate recognition and molecular mechanism of fatty acid hydroxylation by cytochrome P450 from Bacillus subtilis. Crystallographic, spectroscopic, and mutational studies. J. Biol. Chem. 278, 9761-9767.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 9761-9767
-
-
Lee, D.S.1
Yamada, A.2
Sugimoto, H.3
Matsunaga, I.4
Ogura, H.5
Ichihara, K.6
Adachi, S.7
Park, S.Y.8
Shiro, Y.9
-
95
-
-
33750564770
-
Reactions of myeloperoxidase-derived oxidants with biological substrates: Gaining chemical insight into human inflammatory diseases
-
Pattison, D. I. and Davies, M. J. (2006) Reactions of myeloperoxidase-derived oxidants with biological substrates: gaining chemical insight into human inflammatory diseases. Curr. Med. Chem. 13, 3271-3290.
-
(2006)
Curr. Med. Chem
, vol.13
, pp. 3271-3290
-
-
Pattison, D.I.1
Davies, M.J.2
-
96
-
-
33751103136
-
Heme binding to amyloid-β peptide: Mechanistic role in Alzheimer's disease
-
Atamna, H. (2006) Heme binding to amyloid-β peptide: mechanistic role in Alzheimer's disease. J. Alzheimers Dis. 10, 255-266.
-
(2006)
J. Alzheimers Dis
, vol.10
, pp. 255-266
-
-
Atamna, H.1
-
97
-
-
18044388917
-
Role of peroxidases in Parkinson disease: A hypothesis
-
Everse, J. and Coates, P. W (2005) Role of peroxidases in Parkinson disease: a hypothesis. Free Radic. Biol. Med. 38, 1296-1310.
-
(2005)
Free Radic. Biol. Med
, vol.38
, pp. 1296-1310
-
-
Everse, J.1
Coates, P.W.2
-
98
-
-
0002907902
-
2 scavenging in plants
-
ed. Scandailos, J. G, Cold Spring Harbor Laboratory Press, NY, pp
-
2 scavenging in plants. In "Oxidative stress and the molecular biology of antioxidant defenses" ed. Scandailos, J. G., Cold Spring Harbor Laboratory Press, NY, pp. 715-735 (1997).
-
(1997)
Oxidative stress and the molecular biology of antioxidant defenses
, pp. 715-735
-
-
Asada, K.1
-
99
-
-
0035108295
-
Characterization of aryl alcohol oxidase produced by dyedecolorizing fungus, Geotrichum candidum Dec 1
-
Kim, S. J., Suzuki, N. Uematsu, Y and Shoda, M. (2001) Characterization of aryl alcohol oxidase produced by dyedecolorizing fungus, Geotrichum candidum Dec 1. J. Biosci. Bioeng. 91, 166-172.
-
(2001)
J. Biosci. Bioeng
, vol.91
, pp. 166-172
-
-
Kim, S.J.1
Suzuki, N.2
Uematsu, Y.3
Shoda, M.4
-
100
-
-
0038020709
-
Decolorizing kraft pulp bleaching effluent by a newly isolated fungus, Geotrichum candidum Dec 1
-
Shintani, N., Sugano, Y and Shoda, M. (2002) Decolorizing kraft pulp bleaching effluent by a newly isolated fungus, Geotrichum candidum Dec 1. J. Wood Sci. 48, 402-408.
-
(2002)
J. Wood Sci
, vol.48
, pp. 402-408
-
-
Shintani, N.1
Sugano, Y.2
Shoda, M.3
-
101
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C. R., Kandler, O. and Wheelis, M. L. (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87, 4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
102
-
-
47149119129
-
Stable repeated-batch production of recombinant dye-decolorizing peroxidase (rDyP) from Aspergillus oryzae
-
Shakeri, M., Sugano, Y and Shoda, M. (2008) Stable repeated-batch production of recombinant dye-decolorizing peroxidase (rDyP) from Aspergillus oryzae. J. Biosci. Bioeng. 105, 683-686.
-
(2008)
J. Biosci. Bioeng
, vol.105
, pp. 683-686
-
-
Shakeri, M.1
Sugano, Y.2
Shoda, M.3
-
103
-
-
34548357151
-
Change in turnover capacity of crude recombinant dye-decolorizing peroxidase (rDyP) in batch and fed-batch decolorization of Remazol Brilliant Blue R
-
Shakeri, M. and Shoda, M. (2007) Change in turnover capacity of crude recombinant dye-decolorizing peroxidase (rDyP) in batch and fed-batch decolorization of Remazol Brilliant Blue R. Appl. Microbiol. Biotechnol. 76, 919-926.
-
(2007)
Appl. Microbiol. Biotechnol
, vol.76
, pp. 919-926
-
-
Shakeri, M.1
Shoda, M.2
-
104
-
-
0027968068
-
CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Tompson, J. D., Higgins, D. G. and Gibson, T. J. (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Tompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
105
-
-
0043123208
-
ESPript/ ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins
-
Gouet, P., Robert, X. and Courcelle, E. (2003) ESPript/ ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res. 31, 3320-3323.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3320-3323
-
-
Gouet, P.1
Robert, X.2
Courcelle, E.3
-
106
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
107
-
-
0031189518
-
Enzymatic synthesis and characterization of a novel water-soluble polyaniline : Poly(2,5-diaminobenzeneslufonate)
-
Alva, K. S., Kumar, J., Marx, K. A. and Tripathy, S. K. (1997) Enzymatic synthesis and characterization of a novel water-soluble polyaniline : poly(2,5-diaminobenzeneslufonate). Maclomolecules 30, 4024-4029.
-
(1997)
Maclomolecules
, vol.30
, pp. 4024-4029
-
-
Alva, K.S.1
Kumar, J.2
Marx, K.A.3
Tripathy, S.K.4
|