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Volumn 31, Issue 13, 2003, Pages 3320-3323

ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; DNA BINDING PROTEIN; TRANSCRIPTION FACTOR;

EID: 0043123208     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg556     Document Type: Article
Times cited : (1171)

References (21)
  • 1
    • 0019332167 scopus 로고
    • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globin
    • Chothia,C. and Lesk,A.M. (1980) How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globin. J. Mol. Biol., 136, 225-270.
    • (1980) J. Mol. Biol. , vol.136 , pp. 225-270
    • Chothia, C.1    Lesk, A.M.2
  • 2
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • Chothia,C. and Lesk,A.M. (1986) The relation between the divergence of sequence and structure in proteins. EMBO J., 5, 823-826.
    • (1986) EMBO J. , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.M.2
  • 3
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Multiple sequence alignments in PostScript
    • Gouet,P., Courcelle,E., Stuart,D.I. and Metoz,F. (1999) ESPript: multiple sequence alignments in PostScript. Bioinformatics, 15, 305-308.
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4
  • 4
    • 0027968068 scopus 로고
    • ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 5
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet,F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 6
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 7
    • 0029619259 scopus 로고
    • Knowledge-based secondary structure assignment
    • Frishman,D. and Argos,D. (1995) Knowledge-based secondary structure assignment. Proteins, 23, 566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, D.2
  • 8
    • 0036080428 scopus 로고    scopus 로고
    • ENDscript: A workflow to display sequence and structure information
    • Gouet,P. and Courcelle,E. (2002) ENDscript: a workflow to display sequence and structure information. Bioinformatics, 18, 767-768.
    • (2002) Bioinformatics , vol.18 , pp. 767-768
    • Gouet, P.1    Courcelle, E.2
  • 12
    • 0030729838 scopus 로고    scopus 로고
    • An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
    • Esnouf,R.M. (1997) An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graphics, 15, 132-134.
    • (1997) J. Mol. Graphics , vol.15 , pp. 132-134
    • Esnouf, R.M.1
  • 13
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis,P.J. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst., 24, 946-950.
    • (1991) J. Appl. Cryst. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 15
    • 0029889988 scopus 로고    scopus 로고
    • PHD: Predicting one-dimensional protein structure by profile based neural networks
    • Rost,B. (1996) PHD: predicting one-dimensional protein structure by profile based neural networks. Methods Enzymol., 266, 525-539.
    • (1996) Methods Enzymol. , vol.266 , pp. 525-539
    • Rost, B.1
  • 17
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 2000
    • Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 18
    • 0027225980 scopus 로고    scopus 로고
    • Updating the sequence-based classification of glycosyl hydrolases based on amino acid sequence similarities
    • Henrissat,B. and Bairoch,A. (1996) Updating the sequence-based classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J., 293, 781-788.
    • (1996) Biochem. J. , vol.293 , pp. 781-788
    • Henrissat, B.1    Bairoch, A.2
  • 19
    • 0344843325 scopus 로고    scopus 로고
    • PhD thesis, Université Claude Bernard Lyon I
    • Robert,X. (2002) PhD thesis, Université Claude Bernard Lyon I.
    • (2002)
    • Robert, X.1
  • 21
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame,C., Higgins,D.G. and Heringa,J. (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol., 302, 205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.