Molecular characterization of a novel peroxidase isolated from the ligninolytic fungus Pleurotus eryngii

Molecular Microbiology

Volumn 31, Issue 1, 1999, Pages 223-235

  Ruiz Dueñas, Francisco Javier ^a   Martínez, María Jésus ^a   Martínez, Angel T ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

LIGNIN PEROXIDASE; MANGANESE PEROXIDASE; PEROXIDASE;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; ENZYME RELEASE; ENZYME STRUCTURE; FUNGUS; GENE DELETION; INTRON; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHANEROCHAETE; PRIORITY JOURNAL; PROMOTER REGION;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; DNA, FUNGAL; FUNGAL PROTEINS; ISOENZYMES; MANGANESE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEROXIDASE; PEROXIDASES; PLEUROTUS; PROTEIN CONFORMATION; SEQUENCE ANALYSIS;

EID: 0032896638     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1999.01164.x     Document Type: Article

References (54)

1. Asada, Y., Watanabe, A., Irie, T., Nakayama, T., and Kuwahara, M. (1995) Structures of genomic and complementary DNAs coding for Pleurotus ostreatus manganese (II) peroxidase. Biochim Biophys Acta 1251: 205-209.
2. Banci, L. (1997) Structural properties of peroxidases. J Biotechnol 53: 253-263.
3. Blanchette, R.A., Burnes, T.A., Eerdmans, M.M., and Akhtar, M. (1992) Evaluating isolates of Phanerochaete chrysosporium and Ceriporiopsis subvermispora for use in biological pulping processes. Holzforschung 46: 109-115.
4. β of Trp171 in lignin peroxidase. Biochemistry 37: 8832-8838.
5. Camarero, S., Böckle, B., Martínez, M.J., and Martínez, A.T. (1996) Manganese-mediated lignin degradation by Pleurotus pulmonarius. Appl Environ Microbiol 62: 1070-1072.
6. Du, P., Collins, J.R., and Loew, G.H. (1992) Homology modeling of a heme protein, lignin peroxidase, from the crystal structure of cytochrome c peroxidase. Protein Eng 5: 679-691.
7. Eriksson, K.-E.L. (1990) Biotechnology in the pulp and paper industry. Wood Sci Technol 29: 79-101.
8. Finzel, B.C., Poulos, T.L., and Kraut, J. (1984) Crystal structure of yeast cytochrome c peroxidase refined at 1.7-Å resolution. J Biol Chem 259: 13027-13036.
9. Flournoy, D.S., Paul, J.A., Kirk, T.K., and Highley, T.L. (1993) Changes in the size and volume of pores in sweetgum wood during simultaneous rot by Phanerochaete chrysosporium Burds. Holzforschung 47: 297-301.
10. Gajhede, M., Schuller, D.J., Henriksen, A., Smith, A.T., and Poulos, T.L. (1997) Crystal structure of horseradish peroxidase C at 2.15Å resolution. Nature Struct Biology 4: 1032-1038.
11. Gettemy, J.M., Ma, B., Alic, M., and Gold, M.H. (1998) Reverse transcription-PCR analysis of the regulation of the manganese peroxidase gene family. Appl Environ Microbiol 64: 569-574.
12. 2-requiring enzyme preparation involved in lignin biodegradation by the white rot basidiomycete Phanerochaete chrysosporium. Biochem Biophys Res Commun 114: 1077-1083.
13. Gold, M.H., and Alic, M. (1993) Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium. Microbiol Rev 57: 605-622.
14. Gold, M.H., Wariishi, H., Akileswaran, L., Mino, Y., and Loehr, T.M. (1987) Spectral characterization of Mn-peroxidase, an extracellular heme enzyme from Phanerochaete chrysosporium. Colloq INRA 40: 113-118.
15. Gold, M.H., Gelpke, M.D.S., Youngs, H., Kishi, K., Mayfield-Gambill, M., and Moënne-Loccoz, P. (1998) Expression and functional studies on lignin and manganese peroxidase. Proceedings of the 7th International Conference of Biotechnology in the Pulp and Paper Industry, Vancouver, 16-19 June, pp. A71-A73.
16. González, R., Ramón, D., and Pérez González, J.A. (1992) Cloning, sequencing analysis and yeast expression of the egl1 gene from Trichoderma longibrachiatum. Appl Microbiol Biotechnol 38: 370-378.
17. Harris, R.Z., Wariishi, H., Gold, M.H., and Ortiz de Montellano, P.R. (1991) The catalytic site of manganese peroxidase. Regiospecific addition of sodium azide and alkylhydrazines to the heme group. J Biol Chem 266: 8751-8758.
18. Hatakka, A. (1994) Lignin-modifying enzymes from selected white-rot fungi - production and role in lignin degradation. FEMS Microbiol Rev 13: 125-135.
19. Heinfling, A., Martínez, M.J., Martínez, A.T., Bergbauer, M., and Szewzyk, U. (1998a) Purification and characterization of peroxidases from the dye-decolorizing fungus Bjerkandera adusta. FEMS Microbiol Lett 165: 43-50.
20. Heinfling, A., Ruiz-Dueñas, F.J., Martínez, M.J., Bergbauer, M., Szewzyk, U., and Martínez, A.T. (1998b) A study on reducing substrates of manganese-oxidizing peroxidases from Pleurotus eryngii and Bjerkandera adusta. FEBS Lett 428: 141-146.
21. Huoponen, K., Ollikka, P., Kälin, M., Walther, I., Mäntsälä, P., and Reiser, J. (1990) Characterization of lignin peroxidase-encoding genes from lignin-degrading basidiomycetes. Gene 89: 145-150.
22. Johansson, T., and Nyman, P.O. (1996) A cluster of genes encoding major isozymes of lignin peroxidase and manganese peroxidase from the white-rot fungus Trametes versicolor. Gene 170: 31-38.
23. Johnson, F., Loew, G.H., and Du, P. (1994) Homology models of two isozymes of manganese peroxidase: Prediction of a Mn (II) binding site. Protein-Struct Funct Genet 20: 312-319.
24. Jojima, T., Itoh, N., Wariishi, H., and Tanaka, H. (1998) Direct interaction of lignin and lignin peroxidase. Proceedings of the 7th International Conference of Biotechnology in the Pulp and Paper Industry, Vancouver, 16-19 June. A79-A80.
25. Jönsson, L., Becker, H.G., and Nyman, P.O. (1994) A novel type of peroxidase gene from the white-rot fungus Trametes versicolor. BBA-Protein Struct Mol Enzym 1207: 255-259.
26. Kabsch, W., and Sander, C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen bonds and geometrical features. Biopolymers 22: 2577-2637.
27. Kirk, T.K. (1983) Degradation and conversion of lignocelluloses. In The Filamentous Fungi, Vol. 4 Fungal Technology. Smith, J.E. Berry, B.R., and Kristiansen, B. (eds). London: Arnold, pp. 266-294.
28. Kirk, T.K., and Farrell, R.L. (1987) Enzymatic 'combustion': The microbial degradation of lignin. Annu Rev Microbiol 41: 465-505.
29. Kishi, K., Hildebrand, D.P., Kusters-van Someren, M., Gettemy, J., Mauk, A.G., and Gold, M.H. (1997) Site-directed mutations at phenylalanine-190 of manganese peroxidase: Effect on stability, functions and coordination. Biochemistry 36: 4268-4277.
30. Kunishima, N., Fukuyama, K., Matsubara, H., Hatanaka, H., Shibano, Y., and Amachi, T. (1994) Crystal structure of the fungal peroxidase from Arthromyces ramosus at 1.9 Å resolution - structural comparisons with the lignin and cytochrome c peroxidases. J Mol Biol 235: 331-344.
31. 2-dependent oxidases from ligninolytic cultures of Phanerochaete chrysosporium. FEBS Lett 169: 247-250.
32. Lobos, S., Larrondo, L., Salas, L., Karahanian, E., and Vicuña, R. (1998) Cloning and molecular analysis of a cDNA and the Cs-mnp1 gene encoding a manganese peroxidase isoenzyme from the lignin-degrading basidiomycete Ceriporiopsis subvermispora. Gene 206: 185-193.
33. Martínez, A.T., Camarero, S., Guillén, F., Gutiérrez, A., Muñoz, C., Varela, E., et al. (1994) Progress in biopulping of non-woody materials: chemical, enzymatic and ultrastructural aspects of wheat-straw delignification with ligninolytic fungi from the genus Pleurotus. FEMS Microbiol Rev 13: 265-274.
34. Martínez, M.J., Böckle, B., Camarero, S., Guillén, F., and Martínez, A.T. (1996a) MnP isoenzymes produced by two Pleurotus species in liquid culture and during wheat straw solid-state fermentation. In Enzymes for Pulp and Paper Processing. Jeffries, T.W., and Viikari, L. (eds). Washington: ACS, pp. 183-196.
35. Martínez, M.J., Ruiz-Dueñas, F.J., Guillén, F., and Martínez, A.T. (1996b) Purification and catalytic properties of two manganese-peroxidase isoenzymes from Pleurotus eryngii. Eur J Biochem 237: 424-432.
36. Mester, T., and Field, J.A. (1998) Characterization of a novel manganese peroxidase-lignin peroxidase hybrid isozyme produced by Bjerkandera species strain BOS55 in the absence of manganese. J Biol Chem 273: 15412-15417.
37. Orth, A.B., Royse, D.J., and Tien, M. (1993) Ubiquity of lignin-degrading peroxidases among various wood-degrading fungi. Appl Environ Microbiol 59: 4017-4023.
38. Pease, E.A., Andrawis, A., and Tien, M. (1989) Manganese-dependent peroxidase from Phanerochaete chrysosporium. Primary structure deduced from cDNA sequence. J Biol Chem 264: 13531-13535.
39. Peitsch, M.C. (1996) ProMod and Swis-Model: Internet-based tools for automated comparative protein modelling. Biochem Soc Trans 24: 274-279.
40. Peláez, F., Martínez, M.J., and Martínez, A.T. (1995) Screening of 68 species of basidiomycetes for enzymes involved in lignin degradation. Mycol Res 99: 37-42.
41. Pelletier, H., and Kraut, J. (1992) Crystal structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c. Science 258: 1748-1755.
42. Petersen, J.F.W., Kadziola, A., and Larsen, S. (1994) Three-dimensional structure of a recombinant peroxidase from Coprinus cinereus at 2.06 Å resolution. FEBS Lett 339: 291-296.
43. Piontek, K., Glumoff, T., and Winterhalter, K. (1993) Low pH crystal structure of glycosylated lignin peroxidase from Phanerochaete chrysosporium at 2.5 Å resolution. FEBS Lett 315: 119-124.
44. Poulos, T.L., Edwards, S.L., Wariishi, H., and Gold, M.H. (1993) Crystallographic refinement of lignin peroxidase at 2 Å. J Biol Chem 268: 4429-4440.
45. Renganathan, V., and Gold, M.H. (1986) Spectral characterization of the oxidized states of lignin peroxidase, an extracellular heme enzyme from the white rot basidiomycete Phanerochaete chrysosporium. Biochemistry 25: 1626-1631.
46. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
47. Sarkar, S., Martínez, A.T., and Martínez, M.J. (1997) Biochemical and molecular characterization of a manganese peroxidase isoenzyme from Pleurotus ostreatus. Biochim Biophys Acta 1339: 23-30.
48. Schoemaker, H.E., Lundell, T.K., Hatakka, A.I., and Piontek, K. (1994) The oxidation of veratryl alcohol, dimeric lignin models and lignin by lignin peroxidase - The redox cycle revisited. FEMS Microbiol Rev 13: 321-332.
49. Sundaramoorthy, M., Kishi, K., Gold, M.H., and Poulos, T.L. (1994) The crystal structure of manganese peroxidase from Phanerochaete chrysosporium at 2.06-Å resolution. J Biol Chem 269: 32759-32767.
50. Sundaramoorthy, M., Kishi, K., Gold, M.H., and Poulos, T.L. (1997) Crystal structures of substrate binding site mutants of manganese peroxidase. J Biol Chem 272: 17574-17580.
51. Tien, M., and Kirk, T.K. (1983) Lignin-degrading enzyme from the hymenomycete Phanerochaete chrysosporium Burds. Science 221: 661-663.
52. Tien, M., and Tu, C.-P.D. (1987) Cloning and sequencing of a cDNA for a ligninase from Phanerochaete chrysosporium. Nature 326: 520-523.
53. Veitch, N.C., Williams, R.J.P., Bone, N.M., Burke, J.F., and Smith, A.T. (1995) Solution characterisation by NMR spectroscopy of two horseradish peroxidase isoenzyme C mutants with alanine replacing either Phe142 or Phe143. Eur J Biochem 233: 650-658.
54. Welinder, K.G. (1992) Superfamily of plant, fungal and bacterial peroxidases. Curr Opin Struct Biol 2: 388-393.