CDD: A conserved domain database for interactive domain family analysis

Nucleic Acids Research

Volumn 35, Issue SUPPL. 1, 2007, Pages

  Marchler Bauer, Aron ^a   Anderson, John B ^a   Derbyshire, Myra K ^a   DeWeese Scott, Carol ^a   Gonzales, Noreen R ^a   Gwadz, Marc ^a   Hao, Luning ^a   He, Siqian ^a   Hurwitz, David I ^a   Jackson, John D ^a   Ke, Zhaoxi ^a   Krylov, Dmitri ^a   Lanczycki, Christopher J ^a   Liebert, Cynthia A ^a   Liu, Chunlei ^a   Lu, Fu ^a   Lu, Shennan ^a   Marchler, Gabriele H ^a   Mullokandov, Mikhail ^a   Song, James S ^a   Thanki, Narmada ^a   Yamashita, Roxanne A ^a   Yin, Jodie J ^a   Zhang, Dachuan ^a   Bryant, Stephen H ^a   more..

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CONSERVED DOMAIN DATABASE; GENETIC CONSERVATION; INFORMATION PROCESSING; INFORMATION SYSTEM; INTERNET; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN DOMAIN; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; CONSERVED SEQUENCE; DATABASES, PROTEIN; INTERNET; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ANALYSIS, PROTEIN; USER-COMPUTER INTERFACE;

EID: 33846033400     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl951     Document Type: Article

References (10)

1. Marchler-Bauer,A., Anderson,J.B., Cherukuri,P.F., DeWeese-Scott,C., Geer,L.Y., Gwadz,M., He,S., Hurwitz,D.I., Jackson,J.D., Ke,Z. et al. (2005) CDD: A Conserved Domain Database for protein classification. Nucleic Acids Res., 33, D192-D196.
2. Brown,D. and Sjolander,K. (2006) Functional classification using phylogenomic inference. PLoS Comput. Biol., 2, e77.
3. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
4. Marchler-Bauer,A. and Bryant,S.H. (2004) CD-Search: Protein domain annotations on the fly. Nucleic Acids Res., 32, 327-331.
5. Wang,Y., Geer,L.Y., Chappey,C., Kans,J.A. and Bryant,S.H. (2000) Cn3D: sequence and structure views for Entrez. Trends Biochem. Sci., 25, 300-302.
6. Wheeler,D.L., Barrett,T., Benson,D.A., Bryant,S.H., Canese,K., Chetvernin,V., Church,D.M., DiCuccio,M., Edgar,R., Federhen,S. et al. (2006) Database resources of the National Center of Biotechnology Information. Nucleic Acids Res., 34, D173-D180.
7. Geer,L.Y., Domrachev,M., Lipman,D.J. and Bryant,S.H. (2002) CDART: protein homology by domain architecture. Genonm Res., 12, 1619-1623.
8. Finn,R.D., Mistry,I., Schuster-Bockler,B., Griffiths-Jones,S., Hollich,V., Lassmann,T., Moxon,S., Marshall,M., Khanna,A., Durbin,R. et al. (2006) Pfam: Clans, web tools and services. Nucleic Acids Res., 34, D247-D251.
9. Letunic,I., Copley,R.R., Pils,B., Pinkert,S., Schultz,J. and Bork,P. (2006) SMART 5: Domains in the context of genomes and networks. Nucleic Acids Res., 34, D257-D260.
10. Tatusov,R.L., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Kiryutin,B., Koonin,E.V., Krylov,D.M., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N. et al. (2003) The COG database: And updated version includes eukaryotes. BMC Bioinformatics, 4, 41.