Role of H164 in a unique dye-decolorizing heme peroxidase DyP

Biochemical and Biophysical Research Communications

Volumn 322, Issue 1, 2004, Pages 126-132

  Sugano, Yasushi ^a   Ishii, Yosuke ^a   Shoda, Makoto ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

Peroxidase DyP; Proximal histidine; Thanatephorus cucumeris

Indexed keywords

CARBOHYDRATE; DYE DECOLORIZING HEME PEROXIDASE; HISTIDINE DERIVATIVE; PEROXIDASE; PEROXIDASE DYP; UNCLASSIFIED DRUG;

ARTICLE; ASPERGILLUS ORYZAE; CONTROLLED STUDY; ENZYME ANALYSIS; ESCHERICHIA COLI; FUNGUS; GENE EXPRESSION SYSTEM; GENETIC CODE; MOLECULAR DYNAMICS; MOLECULAR WEIGHT; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN MODIFICATION; PROTEIN PURIFICATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS; SPECIES COMPARISON; THANATEPHORUS CUCUMERIS; THERMOSTABILITY; X RAY CRYSTALLOGRAPHY;

AMINO ACID SUBSTITUTION; AZO COMPOUNDS; COLORING AGENTS; ENZYME ACTIVATION; ENZYME STABILITY; ESCHERICHIA COLI; HEME; HYDROGEN-ION CONCENTRATION; MOLECULAR WEIGHT; PEROXIDASES; PROTEIN ENGINEERING; RECOMBINANT PROTEINS; STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY;

ASPERGILLUS; ASPERGILLUS ORYZAE; ESCHERICHIA COLI; FUNGI; THANATEPHORUS CUCUMERIS;

EID: 4143083743     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.07.090     Document Type: Article

References (38)

1. S.J. Kim, K. Ishikawa, M. Hirai, and M. Shoda Characteristics of a newly isolated fungus, Geotrichum candidum Dec1, which decolorizes various dyes J. Ferment. Bioeng. 79 1995 601 607
2. S.J. Kim, and M. Shoda Purification and characterization of a novel peroxidase from Geotrichum candidum Dec1 involved in decolorization of dyes Appl. Environ. Microbiol. 65 1999 1029 1035
3. Y. Sugano, K. Sasaki, and M. Shoda cDNA cloning and genetic analysis of a novel decolorizing enzyme, peroxidase gene dyp from Geotrichum candidum Dec1 J. Biosci. Bioeng. 87 1999 411 417
4. Y. Sugano, R. Nakano, K. Sasaki, and M. Shoda Efficient heterologous expression in Aspergillus oryzae of a unique dye-decolorizing peroxidase, DyP, of Geotrichum candidum Dec 1 Appl. Environ. Micobiol. 66 2000 1754 1758
5. T. Sato, S. Hara, T. Matsui, G. Sazaki, S. Saijo, T. Ganbe, N. Tanaka, Y. Sugano, and M. Shoda A unique dye-decolorizing peroxidase, DyP, from Thanatephorus cucumeris Dec 1: heterologous expression, crystallization and preliminary X-ray analysis Acta Crystallogr. D 60 2004 149 152
6. K.G. Welinder Superfamily of plant, fungal, and bacterial peroxidases Curr. Opin. Struct. Biol. 2 1992 388 393
7. 2-requiring diarylpropane oxygenase from the white rot basidiomycete, Phanerochaete chrysosporium Arch. Biochem. Biophys. 234 1984 353 362
8. J.K Glenn, and M.H. Gold Purification and characterization of an extracellular Mn(II)-dependent peroxidase from the lignin-degrading Basidiomycete, Phanerochaete chrysosporium Arch. Biochem. Biophys. 242 1985 329 341
9. T. Johjima, M. Ohkuma, and T. Kudo Isolation and cDNA cloning of novel hydrogen peroxide-dependent phenol oxidase from the basidiomycete Termitomyces albuminosus Appl. Microbiol. Biotechnol. 61 2003 220 225
10. S.F. Altschul, T.L. Madden, A.A. Shaffer, J. Zang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acid Res. 25 1997 3389 3402
11. P. Ollikka, K. Alhonmaki, V.M. Leppanen, T. Glimoff, T. Rainola, and I. Suominen Decolorization of azo triphenyl methane, heterocyclic, and polymeric dyes by lignin peroxidase isozymes from Phanerochaete chrysosporium Appl. Environ. Microbiol. 59 1993 4010 4016
12. C. Cripps, J.S. Bumpus, and S.D. Aust Biodegradation of azo and heterocyclic dyes by Phanerochaete chrysosporium Appl. Environ. Microbiol. 56 1990 1114 1118
13. 2-dependent ligninolytic activity of the white rot fungus Pleurotus ostreatus in the decolorization of remazol brilliant blue R Appl. Environ. Microbiol. 61 1995 3919 3927
14. M. Chivukula, J.T. Spadaro, and V. Renganathan Lignin peroxidase catalyzed oxidation of sulfonated azo dyes generates novel sulfophenyl hydroperoxidase Biochemistry 34 1995 7765 7772
15. S. Goszcynski, A.P. Pasczynski, M.B. Grigsby, R.L. Crawford, and D.L. Crawford New pathway for degradation of sulfonated azo dye by microbial peroxidases of Phanerochaete chrysosporium and Streptomyces chromofuscus J. Bacterial. 172 1994 1339 1347
16. S. Camareo, S. Sarker, F.J. Ruiz-Dueas, M.J. Martí-nez, and A.T. Martí-nez Description of a versatile peroxidase involved in the natural degradation of lignin that has both manganese peroxidase and lignin peroxidase substrate interaction sites J. Biol. Chem. 274 1999 10324 10330
17. V. Gómez-Toribio, A.T. Martí-nez, and M.J. Martí-nez Oxidation of hydroquinones by the versatile ligninolytic peroxidase from Pleurotus eryngii Eur. J. Biochem. 268 2001 4787 4793
18. F.J. Ruiz-Dueńas, S. Camarero, M. Pérez-Boada, M.J. Martí-nez, and A.T. Martí-nez A new versatile peroxidase from Pleurotus Biochem. Soc. Trans. 29 2001 116 122
19. A. Heinfling, M.J. Martinez, A.T. Martinez, M. Bergbauer, and U. Szewzyk Purification and characterization of peroxidases from the dye-decolorizing fungus Bjerkandera adusta FEMS Microbiol. Lett. 165 1998 43 50
20. A. Heinfling, F.J. Ruiz-Duenas, M.J. Martinez, A.T. Martinez, M. Bergbauer, and U. Szewzyk A study on reducing substrates of manganese-oxidizing peroxidases from Pleurotus eryngii and Bjerkandera adusta FEBS Lett. 428 1998 141 146
21. 2+ and different aromatic substrates Appl. Environ. Microbiol. 65 1999 4705 4707
22. A. Heinfling, M.J. Martinez, A.T. Martinez, M. Bergbauer, and U. Szewzyk Transformation of industrial dyes by manganese peroxidases from Bjerkandera adusta and Pleurotus eryngii in a manganese-independent reaction Appl. Environ. Microbiol. 64 1998 2788 2793
23. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: A Laboratory Manual second ed. 1989 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
24. F. Sanger, S. Nicklen, and A.R. Coulson DNA sequencing with chain-terminating inhibitors Proc. Natl. Acad. Sci. USA 74 1977 5463 5467
25. M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72 1976 248 254
26. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature (London) 277 1970 680 685
27. P. Edman A method for the determination of the amino acid sequence in peptides Arch. Biochem. Biophys. 22 1949 475 476
28. G. Nie, N.S. Reading, and S.D. Aust Relative stability of recombinant versus native peroxidases from Phanerochaete chrysosporium Arch. Biochem. Biophys. 365 1999 328 334
29. S.L. Newmyer, J. Sun, T.M. Loehr, P.R. Oritz, and O. Montellano Rescue of the horseradish peroxidase His-170 → Ala mutant activity by imidazole: importance of proximal ligand tethering Biochemistry 35 1996 12788 12795
30. S.L. Newmyer, and P.R.O. de Montellano Rescue of the catalytic activity of an H42A mutant of horseradish peroxidase by exogenous imidazoles J. Biol. Chem. 271 1996 14891 14896
31. S. Nagano, M. Tanaka, K. Ishimori, Y. Watanabe, and I. Morishima Catalytic roles of the distal site asparagines-histidine couple in peroxidases Biochemistry 35 1996 14251 14258
32. M.I. Savenokova, S.L. Newmyer, and P.R.O. de Montellano Rescue of His-42 → Ala horseradish peroxidase by a Phe-41 → His mutation J. Biol. Chem. 271 1996 24598 24603
33. M. Tanaka, K. Ishimori, M. Mukai, T. Kitazawa, and I. Morishima Catalytic activities and structural properties of horseradish peroxidase distal His42 → Glu or Gln mutant Biochemistry 36 1997 9889 9898
34. M. Tanaka, S. Nagano, K. Ishimori, and I. Morishima Hydrogen bond network in the distal site of peroxidases: spectroscopic properties of Asn70 → Asp horseradish peroxidase mutant Biochemistry 36 1997 9791 9798
35. H. Itakura, Y. Oda, and K. Fukuyama Binding mode of benzhydroxamic acid to Arthromyces ramosus peroxidase shown by X-ray crystallographic analysis of the complex at 1.6Å resolution FEBS Lett. 412 1997 107 110
36. W.A. Doyle, W. Blodig, N.C. Veitch, K. Piontek, and A.T. Smith Two substrate interaction sites in lignin peroxidase revealed by site-directed mutagenesis Biochemistry 37 1998 15097 15105
37. A. Henriksen, D.J. Schuller, K. Meno, K.G. Welinder, A.T. Smith, and M. Gajhede Structural interactions between horseradish peroxidase C and the substrate benzhydroxamic acid determined by X-ray crystallography Biochemistry 37 1998 8054 8060
38. M.D.S. Gelpke, J. Lee, and M.H. Gold Lignin peroxidase oxidation of veratryl alcohol: effects of the mutants H82A, Q222A, W171A, and F267L Biochemistry 41 2002 3498 3506