Isolation and cDNA cloning of novel hydrogen peroxide-dependent phenol oxidase from the basidiomycete Termitomyces albuminosus

Applied Microbiology and Biotechnology

Volumn 61, Issue 3, 2003, Pages 220-225

  Johjima, T ^a,b   Ohkuma, M ^a,b   Kudo, T ^a,c  

^a KASETSART UNIVERSITY   (Thailand)

^b RIKEN   (Japan)

^c YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; FUNGAL ENZYME; HEME PEROXIDASE; HYDROGEN PEROXIDE; HYDROGEN PEROXIDE DEPENDENT PHENOL OXIDASE; MONOPHENOL MONOOXYGENASE; PHENOL DERIVATIVE; UNCLASSIFIED DRUG; VERATRYL ALCOHOL;

ENZYME;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; ASCOMYCETES; BASIDIOMYCETES; CATALYSIS; DNA DETERMINATION; ENZYME ANALYSIS; ENZYME PURIFICATION; ENZYME STRUCTURE; FUNGUS; GENE AMPLIFICATION; GENE ISOLATION; GEOTRICHUM CANDIDUM; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH MEASUREMENT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; TERMITOMYCES ALBUMINOSUS;

ASCOMYCOTA; BASIDIOMYCOTA; FUNGI; GALACTOMYCES GEOTRICHUM; GEOTRICHUM; TERMITOMYCES; TERMITOMYCES ALBUMINOSUS;

EID: 0038702590     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-003-1236-4     Document Type: Article

References (40)

1. Abe T, Matsumoto T (1979) Studies on the distribution and ecological role of termites in a lowland rain forest of west Malaysia. 3. Distribution and abundance of termites in Pasoh Forest Reserve. Jpn J Ecol 29:337-351
2. Altschul SF, Madden TL, Schäer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Camarero S, Bockle B, Martin MJ, Martin AT (1996) Manganese-mediated lignin degradation by Pleurotus pulmonarius. Appl Environ Microbiol 62:1070-1072
4. Camarero S, Sarkar S, Ruiz-Duenas FJ, Martinez MJ, Martinez AT (1999) Description of a versatile peroxidase involved in the natural degradation of lignin that has both manganese peroxidase and lignin peroxidase substrate interaction sites. J Biol Chem 274:10324-10330
5. Chomczynsld P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159
6. Doyle WA, Blodig W, Veitch NC, Piontek K, Smith AT (1998) Two substrate interaction sites in lignin peroxidase revealed by site-directed mutagenesis. Biochemistry 37:15097-15105
7. 2-requiring enzyme preparation involved in lignin biodegradation by the white rot basidiomycete Phanerochaete chrysosporium. Biochem Biophys Res Commun 114:1077-1083
8. Gold MH, Wariishi H, Valli K (1989) Extracellular peroxidase involved in lignin degradation by the white rot basidiomycete Phanerochaete chrysosporium. In: Whitaker JR, Sonnet PE (eds) ACS Symposium,Washington D.C., pp 127-140
9. Grassé PP, Noirot C (1958) Le meule des termites chqmpignonnistes et sa signification symbiotique. Ann Sci Nat Zool Biol Anim 20:113-128
10. Hatakka A (2001) Biodegradation of lignin. In: Hofrichter M, Steinbüchel A (eds) Biopolymers, vol. 1. Wiley-VCH, Weinheim, pp 129-180
11. Hofmann K, Bucher P, Falquet L, Bairoch A (1999) The PROSITE database, its status in 1999. Nucleic Acids Res 27:215-219
12. Huang X, Miller W (1991) A time-efficient, linear-space local similarity algorithm. Adv Appl Math 12:373-381
13. Johjima T, Itoh N, Kabuto M, Tokimura F, Nakagawa T, Wariishi H, Tanaka H (1999) Direct interaction of lignin and lignin peroxidase from Phanerochaete chrysosporium. Proc Nat Acad Sci U S A 96:1989-1994
14. Kaneko T, Nakamura Y, Wolk CP, Kuritz T, Sasamoto S, Watanabe A, Iriguchi M, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakazaki N, Shimpo S, Sugimoto M, Takazawa M, Yamada M, Yasuda M, Tabata S (2001) Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res 8:205-213
15. Kang SO, Shin KS, Han YH, Youn HD, Hah YC (1993) Purification and characterization of an extracellular peroxidase from white-rot fungus Pleurotus ostreatus. Biochim Biophys Acta 1163:158-164
16. Kersten PJ, Tien M, Kalyanaraman B, Kirk TK (1985) The ligninase of Phanerochaete chrysosporium generates cation radicals from methoxybenzenes. J Biol Chem 260:2609-2612
17. Kim SJ, Shoda M (1999) Purification and characterization of a novel peroxidase from Geotrichum candidum Dec 1 involved in decolorization of dyes. Appl Environ Microbiol 65:1029-1035
18. Kirk TK, Farrell RL (1987) Enzymatic "combustion": The microbial degradation of lignin. Annu Rev Microbiol 41:465-505
19. 2-dependent oxidases from Igninolytic cultures of Phanerochaete chrysosporium. FEBS Lett 169:247-250
20. Lee Y, Shin K (2000) Isolation and characterization of the second extracellular peroxidase of the white-rot fungus Coriolus hirsutus. Mycologia 92:1057-1063
21. Leontievsky A, Myasoedova N, Pozdnyakova N Golovleva L (1997) 'Yellow' laccase of Panus tigrinus oxidizes non-phenolic substrates without electron-transfer mediators. FEBS Lett 413:446-448
22. Mester T, Field JA (1998) Characterization of a novel manganese peroxidase-lignin peroxidase hybrid isozyme produced by Bjerkandera species strain BOS55 in the absence of manganese. J Biol Chem 273:15412-15417
23. Morita Y, Yamashita H, Mikami B, Iwamoto H, Aibara S, Terada M, Minami J (1988) Purification, crystallization, and characterization of peroxidase from Coprinus cinereus. J Biochem 103:693-699
24. Myers E, Miller W (1988) Optimal alignments in linear space. Comput Appl Biosci 4:11-17
25. 2 solutions in the UV). Anal Biochem 49:474-478
26. Palmieri G, Giardina P, Bianco C, Sacaloni A, Capasso A, Sannia G (1997) A novel white laccase from Pleurotus ostreatus. J Biol Chem 272:31301-31307
27. Pointing SB (2001) Feasibility of bioremediation by white-rot fungi. Appl Microbiol Biotechnol 57:20-33
28. Shin K, Lee Y (2000) A novel extracellular peroxidase of the white-rot basidiomycete Coriolus hirsutus. Mycologia 92:537-544
29. Shin K, Oh I, Kim C (1997) Production and purification of Remazol Brilliant Blue R decolorizing peroxidase from the culture filtrate of Pleurotus ostreatus. Appl Environ Microbiol 63:1744-1748
30. Sieber R, Leuthold RH (1981) Behaviour elements and their meaning in incipient laboratory colonies of the fungus-growing termite Macrotermes michaelseni (Isoptera: Macrotermitinae). Insectes Sociaux 28:371-387
31. Sugano Y, Sasaki K, Shoda M (1999) cDNA cloning and genetic analysis of a novel decolorizing enzyme, peroxidase gene dyp from Geotrichum candidum Dec 1. J Biosci Bioeng 87:411-417
32. Tatusova TA, Madden TL (1999) BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174:247-250
33. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
34. Tien M, Kirk TK (1983) Lignin-degrading enzyme from the hymenomycete Phanerochaete chrysosporium Burds. Science 221:661-663
35. Tien M, Kirk TK, Bull C, Fee JA (1986) Steady-state and transient-state kinetic studies on the oxidation of 3,4-dimethoxybenzyl alcohol catalyzed by the ligninase of Phanerochaete chrysosporium Burds. J Biol Chem 261:1687-1693
36. Wariishi H, Valli K, Gold MH (1992) Manganese(II) oxidation by manganese peroxidase from the basidiomycete Phanerochaete chrysosporium. Kinetic mechanism and role of chelators. J Biol Chem 267:23688-23695
37. Welinder KG (1992) Superfamily of plant, fungal and bacterial peroxidases. Curr Opin Struct Biol 2:388-393
38. White O, Eisen JA, Heidelberg JF, Hickey EK, Peterson JD, Dodson RJ, Haft DH, Gwinn ML, Nelson WC, Richardson DL, Moffat KS, Qin H, Jiang L, Pamphile W, Crosby M, Shen M, Vamathevan JJ, Lam P, McDonald L, Utterback T, Zalewski C, Makarova KS, Aravind L, Daly MJ, Fraser CM (1999) Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286:1571-1577
39. Wolfenden BS, Willson RL (1982) Radical-cations as reference chromogens in kinetic studies of one-electron transfer-reactions. Pulse radiolysis studies of 2,2′-azinobis-(3-ethylbenzthiazoline-6-sulphonate). J Chem Soc Perkin Trans II:805-812
40. Wood TG, Sands WA (1978) The role of termites in ecosystems. In: Brian MV (ed) Production ecology of ants and termites. Cambridge University Press, Cambridge, pp 245-292