-
2
-
-
0035958073
-
Roles of water in heme peroxidase and catalase mechanisms
-
2O) is a 'wet' form in which a water molecule is present at or near to the site of formation of the coproduct water; compound I is a 'dry' form in which the site of formation of the coproduct water is 'dry'. This difference affects the functional distinction between HRP and catalase, in which a two-electron equivalent reduction of compound I is accessible in the 'dry' form, but a one-electron reduction process is possible in the 'wet' form.
-
2O) is a 'wet' form in which a water molecule is present at or near to the site of formation of the coproduct water; compound I is a 'dry' form in which the site of formation of the coproduct water is 'dry'. This difference affects the functional distinction between HRP and catalase, in which a two-electron equivalent reduction of compound I is accessible in the 'dry' form, but a one-electron reduction process is possible in the 'wet' form.
-
(2001)
J Biol Chem
, vol.276
, pp. 13791-13796
-
-
Jones, P.1
-
3
-
-
0029646104
-
The crystal structure of chloroperoxidase: A heme peroxidase-cytochrome P450 functional hybrid
-
Sundaramoorthy M., Terner J., Poulos T.L. The crystal structure of chloroperoxidase: a heme peroxidase-cytochrome P450 functional hybrid. Structure. 3:1995;1367-1377.
-
(1995)
Structure
, vol.3
, pp. 1367-1377
-
-
Sundaramoorthy, M.1
Terner, J.2
Poulos, T.L.3
-
5
-
-
0026527083
-
Mechanisms of cytochrome P450 and peroxidase-catalyzed xenobiotic metabolism
-
Hollenberg P.F. Mechanisms of cytochrome P450 and peroxidase-catalyzed xenobiotic metabolism. FASEB J. 6:1992;686-694.
-
(1992)
FASEB J
, vol.6
, pp. 686-694
-
-
Hollenberg, P.F.1
-
6
-
-
0026502760
-
Primary structure of human thromboxane synthase determined from the cDNA sequence
-
Ohashi K., Ruan K.H., Kulmacz R.J., Wu K.K., Wang L.H. Primary structure of human thromboxane synthase determined from the cDNA sequence. J Biol Chem. 267:1992;789-793.
-
(1992)
J Biol Chem
, vol.267
, pp. 789-793
-
-
Ohashi, K.1
Ruan, K.H.2
Kulmacz, R.J.3
Wu, K.K.4
Wang, L.H.5
-
7
-
-
0028332262
-
Molecular cloning and expression of human prostacyclin synthase
-
Miyata A., Hara S., Yokoyama C., Inoue H., Ullrich V., Tanabe T. Molecular cloning and expression of human prostacyclin synthase. Biochem Biophys Res Commun. 200:1994;1728-1734.
-
(1994)
Biochem Biophys Res Commun
, vol.200
, pp. 1728-1734
-
-
Miyata, A.1
Hara, S.2
Yokoyama, C.3
Inoue, H.4
Ullrich, V.5
Tanabe, T.6
-
8
-
-
0027323306
-
Molecular cloning of an allene oxide synthase: A cytochrome P450 specialized for the metabolism of fatty acid hydroperoxides
-
Song W.C., Funk C.D., Brash A.R. Molecular cloning of an allene oxide synthase: a cytochrome P450 specialized for the metabolism of fatty acid hydroperoxides. Proc Natl Acad Sci USA. 90:1993;8519-8523.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 8519-8523
-
-
Song, W.C.1
Funk, C.D.2
Brash, A.R.3
-
9
-
-
0030599165
-
Bell pepper fruit fatty acid hydroperoxide lyase is a cytochrome P450 (CYP74B)
-
Matsui K., Shibutani M., Hase T., Kajiwara T. Bell pepper fruit fatty acid hydroperoxide lyase is a cytochrome P450 (CYP74B). FEBS Lett. 394:1996;21-24.
-
(1996)
FEBS Lett
, vol.394
, pp. 21-24
-
-
Matsui, K.1
Shibutani, M.2
Hase, T.3
Kajiwara, T.4
-
10
-
-
0030879682
-
Molecular cloning and expression of fatty acid α-hydroxylase from Sphingomonas paucimobilis
-
Matsunaga I., Yokotani N., Gotoh O., Kusunose E., Yamada M., Ichihara K. Molecular cloning and expression of fatty acid α-hydroxylase from Sphingomonas paucimobilis. J Biol Chem. 272:1997;23592-23596.
-
(1997)
J Biol Chem
, vol.272
, pp. 23592-23596
-
-
Matsunaga, I.1
Yokotani, N.2
Gotoh, O.3
Kusunose, E.4
Yamada, M.5
Ichihara, K.6
-
11
-
-
0032871004
-
Characterization of the ybdT gene product of Bacillus subtilis: Novel fatty acid β-hydroxylating cytochrome P450
-
Matsunaga I., Ueda A., Fujiwara N., Sumimoto T., Ichihara K. Characterization of the ybdT gene product of Bacillus subtilis: novel fatty acid β-hydroxylating cytochrome P450. Lipids. 34:1999;841-846.
-
(1999)
Lipids
, vol.34
, pp. 841-846
-
-
Matsunaga, I.1
Ueda, A.2
Fujiwara, N.3
Sumimoto, T.4
Ichihara, K.5
-
12
-
-
0027113109
-
Cytochrome P450cam: Crystallography, oxygen activation, and electron transfer
-
Poulos T.L., Raag R. Cytochrome P450cam: crystallography, oxygen activation, and electron transfer. FASEB J. 6:1992;674-679.
-
(1992)
FASEB J
, vol.6
, pp. 674-679
-
-
Poulos, T.L.1
Raag, R.2
-
13
-
-
11944251329
-
Elementary steps in the reaction of horseradish peroxidase with several peroxides: Kinetics and thermodynamics of formation of compound 0 and compound I
-
Baek H.K., Van Wart H.E. Elementary steps in the reaction of horseradish peroxidase with several peroxides: kinetics and thermodynamics of formation of compound 0 and compound I. J Am Chem Soc. 114:1992;718-725.
-
(1992)
J Am Chem Soc
, vol.114
, pp. 718-725
-
-
Baek, H.K.1
Van Wart, H.E.2
-
14
-
-
0032170496
-
Stereochemistry of the chloroperoxidase active site: Crystallographic and molecular-modeling studies
-
Sundaramoorthy M., Terner J., Poulos T.L. Stereochemistry of the chloroperoxidase active site: crystallographic and molecular-modeling studies. Chem Biol. 5:1998;461-473.
-
(1998)
Chem Biol
, vol.5
, pp. 461-473
-
-
Sundaramoorthy, M.1
Terner, J.2
Poulos, T.L.3
-
15
-
-
0037065667
-
Enzymatic reaction of hydrogen peroxide-dependent peroxygenase cytochrome P450s: Kinetic deuterium isotope effects and analyses by resonance Raman spectroscopy
-
BSβ demonstrated that the catalytic pocket of this enzyme is polar and allows the carboxylate group of a fatty acid substrate to approach the sixth ligand of the heme. On the basis of these observations, the authors proposed a possible mechanism of the peroxygenase P450 reaction, in which a substrate-supported reaction was postulated.
-
BSβ demonstrated that the catalytic pocket of this enzyme is polar and allows the carboxylate group of a fatty acid substrate to approach the sixth ligand of the heme. On the basis of these observations, the authors proposed a possible mechanism of the peroxygenase P450 reaction, in which a substrate-supported reaction was postulated.
-
(2002)
Biochemistry
, vol.41
, pp. 1886-1892
-
-
Matsunaga, I.1
Yamada, A.2
Lee, D.S.3
Obayashi, E.4
Fujiwara, N.5
Kobayashi, K.6
Ogura, H.7
Shiro, Y.8
-
16
-
-
0041563683
-
Detection of an enol intermediate in the hydroperoxide lyase chain cleavage reaction
-
Grechkin A.N., Mukhtarova L.S., Hamberg M. Detection of an enol intermediate in the hydroperoxide lyase chain cleavage reaction. FEBS Lett. 549:2003;31-34.
-
(2003)
FEBS Lett
, vol.549
, pp. 31-34
-
-
Grechkin, A.N.1
Mukhtarova, L.S.2
Hamberg, M.3
-
17
-
-
0030780270
-
Crystal structure of horseradish peroxidase C at 2.15 Å resolution
-
Gajhede M., Schuller D.J., Henriksen A., Smith A.T., Poulos T.L. Crystal structure of horseradish peroxidase C at 2.15 Å resolution. Nat Struct Biol. 4:1997;1032-1038.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 1032-1038
-
-
Gajhede, M.1
Schuller, D.J.2
Henriksen, A.3
Smith, A.T.4
Poulos, T.L.5
-
18
-
-
0037646516
-
Substrate recognition and molecular mechanism of fatty acid hydroxylation by cytochrome P450 from Bacillus subtilis. Crystallographic, spectroscopic, and mutational studies
-
•], the substrate is stabilized by an electrostatic interaction between Arg242 and the carboxylate group of the substrate and hydrophobic interactions between some hydrophobic amino acids and an acyl chain of the substrate. The most interesting finding was that the carboxylate oxygen of the substrate is located at the position that allows interaction with the sixth water ligand. This interaction is reminiscent of the functional role of Glu of CPO, suggesting the substrate-supported catalytic mechanism of peroxygenase P450 (see Figure 1).
-
•], the substrate is stabilized by an electrostatic interaction between Arg242 and the carboxylate group of the substrate and hydrophobic interactions between some hydrophobic amino acids and an acyl chain of the substrate. The most interesting finding was that the carboxylate oxygen of the substrate is located at the position that allows interaction with the sixth water ligand. This interaction is reminiscent of the functional role of Glu of CPO, suggesting the substrate-supported catalytic mechanism of peroxygenase P450 (see Figure 1).
-
(2003)
J Biol Chem
, vol.278
, pp. 9761-9767
-
-
Lee, D.S.1
Yamada, A.2
Sugimoto, H.3
Matsunaga, I.4
Ogura, H.5
Ichihara, K.6
Adachi, S.7
Park, S.Y.8
Shiro, Y.9
-
19
-
-
0035606245
-
High-valent intermediates of heme proteins and model compounds
-
Harris D.L. High-valent intermediates of heme proteins and model compounds. Curr Opin Chem Biol. 5:2001;724-735.
-
(2001)
Curr Opin Chem Biol
, vol.5
, pp. 724-735
-
-
Harris, D.L.1
-
20
-
-
0033607254
-
Replacement of the proximal heme thiolate ligand in chloroperoxidase with a histidine residue
-
Yi X., Mroczko M., Manoj K.M., Wang X., Hager L.P. Replacement of the proximal heme thiolate ligand in chloroperoxidase with a histidine residue. Proc Natl Acad Sci USA. 96:1999;12412-12417.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 12412-12417
-
-
Yi, X.1
Mroczko, M.2
Manoj, K.M.3
Wang, X.4
Hager, L.P.5
-
21
-
-
0027421337
-
Histidine 52 is a critical residue for rapid formation of cytochrome c peroxidase compound I
-
Erman J.E., Vitello L.B., Miller M.A., Shaw A., Brown K.A., Kraut J. Histidine 52 is a critical residue for rapid formation of cytochrome c peroxidase compound I. Biochemistry. 32:1993;9798-9806.
-
(1993)
Biochemistry
, vol.32
, pp. 9798-9806
-
-
Erman, J.E.1
Vitello, L.B.2
Miller, M.A.3
Shaw, A.4
Brown, K.A.5
Kraut, J.6
-
22
-
-
0029151614
-
Horseradish peroxidase His-42 → Ala, His-42 → Val, and Phe-41 → Ala mutants. Histidine catalysis and control of substrate access to the heme iron
-
Newmyer S.L., Ortiz de Montellano P.R. Horseradish peroxidase His-42 → Ala, His-42 → Val, and Phe-41 → Ala mutants. Histidine catalysis and control of substrate access to the heme iron. J Biol Chem. 270:1995;19430-19438.
-
(1995)
J Biol Chem
, vol.270
, pp. 19430-19438
-
-
Newmyer, S.L.1
Ortiz De Montellano, P.R.2
-
23
-
-
0034088779
-
The catalytic pathway of cytochrome p450cam at atomic resolution
-
Schlichting I., Berendzen J., Chu K., Stock A.M., Maves S.A., Benson D.E., Sweet R.M., Ringe D., Petsko G.A., Sligar S.G. The catalytic pathway of cytochrome p450cam at atomic resolution. Science. 287:2000;1615-1622.
-
(2000)
Science
, vol.287
, pp. 1615-1622
-
-
Schlichting, I.1
Berendzen, J.2
Chu, K.3
Stock, A.M.4
Maves, S.A.5
Benson, D.E.6
Sweet, R.M.7
Ringe, D.8
Petsko, G.A.9
Sligar, S.G.10
-
24
-
-
0033550059
-
Resonance Raman studies of cytochrome P450BM3 and its complexes with exogenous ligands
-
Deng T.J., Proniewicz L.M., Kincaid J.R., Yeom H., Macdonald I.D., Sligar S.G. Resonance Raman studies of cytochrome P450BM3 and its complexes with exogenous ligands. Biochemistry. 38:1999;13699-13706.
-
(1999)
Biochemistry
, vol.38
, pp. 13699-13706
-
-
Deng, T.J.1
Proniewicz, L.M.2
Kincaid, J.R.3
Yeom, H.4
MacDonald, I.D.5
Sligar, S.G.6
-
25
-
-
0034064119
-
Fatty acid-specific, regiospecific, and stereospecific hydroxylation by cytochrome P450 (CYP152B1) from Sphingomonas paucimobilis: Substrate structure required for alpha-hydroxylation
-
Matsunaga I., Sumimoto T., Ueda A., Kusunose E., Ichihara K. Fatty acid-specific, regiospecific, and stereospecific hydroxylation by cytochrome P450 (CYP152B1) from Sphingomonas paucimobilis: substrate structure required for alpha-hydroxylation. Lipids. 35:2000;365-371.
-
(2000)
Lipids
, vol.35
, pp. 365-371
-
-
Matsunaga, I.1
Sumimoto, T.2
Ueda, A.3
Kusunose, E.4
Ichihara, K.5
-
27
-
-
0033858391
-
Unique heme environment at the putative distal region of hydrogen peroxide-dependent fatty acid alpha-hydroxylase from Sphingomonas paucimobilis (peroxygenase P450(SPalpha)
-
Imai Y., Matsunaga I., Kusunose E., Ichihara K. Unique heme environment at the putative distal region of hydrogen peroxide-dependent fatty acid alpha-hydroxylase from Sphingomonas paucimobilis (peroxygenase P450(SPalpha). J Biochem (Tokyo). 128:2000;189-194.
-
(2000)
J Biochem (Tokyo)
, vol.128
, pp. 189-194
-
-
Imai, Y.1
Matsunaga, I.2
Kusunose, E.3
Ichihara, K.4
-
28
-
-
0029661445
-
Rescue of His-42 → Ala horseradish peroxidase by a Phe-41 → His mutation. Engineering of a surrogate catalytic histidine
-
Savenkova M.I., Newmyer S.L., Montellano P.R. Rescue of His-42 → Ala horseradish peroxidase by a Phe-41 → His mutation. Engineering of a surrogate catalytic histidine. J Biol Chem. 271:1996;24598-24603.
-
(1996)
J Biol Chem
, vol.271
, pp. 24598-24603
-
-
Savenkova, M.I.1
Newmyer, S.L.2
Montellano, P.R.3
-
29
-
-
0032575290
-
Improvement of peroxygenase activity by relocation of a catalytic histidine within the active site of horseradish peroxidase
-
Savenkova M.I., Kuo J.M., Ortiz de Montellano P.R. Improvement of peroxygenase activity by relocation of a catalytic histidine within the active site of horseradish peroxidase. Biochemistry. 37:1998;10828-10836.
-
(1998)
Biochemistry
, vol.37
, pp. 10828-10836
-
-
Savenkova, M.I.1
Kuo, J.M.2
Ortiz De Montellano, P.R.3
-
30
-
-
0030742880
-
Catalytic activities and structural properties of horseradish peroxidase distal His42 → Glu or Gln mutant
-
Tanaka M., Ishimori K., Mukai M., Kitagawa T., Morishima I. Catalytic activities and structural properties of horseradish peroxidase distal His42 → Glu or Gln mutant. Biochemistry. 36:1997;9889-9898.
-
(1997)
Biochemistry
, vol.36
, pp. 9889-9898
-
-
Tanaka, M.1
Ishimori, K.2
Mukai, M.3
Kitagawa, T.4
Morishima, I.5
-
31
-
-
0036794343
-
Structural analysis of the two horseradish peroxidase catalytic residue variants H42E and R38S/H42E: Implications for the catalytic cycle
-
The crystal structure of HRP His42Glu mutant co-crystallized with benzhydroxamic acid was solved at a resolution of 2.5 Å. The oxygen atoms of the Glu side-chain occupied positions that are very similar to the two side-chain nitrogen atoms of the distal His in the HRP structure previously reported, supporting the view that His42 of HRP can be substituted with Glu with the peroxidase activity being retained. Because the Glu side-chain is smaller than the His side-chain, the catalytic cavity was enlarged. This enlarged cavity could improve access of a peroxygenase substrate.
-
Meno K., Jennings S., Smith A.T., Henriksen A., Gajhede M. Structural analysis of the two horseradish peroxidase catalytic residue variants H42E and R38S/H42E: implications for the catalytic cycle. Acta Crystallogr D Biol Crystallogr. 58:2002;1803-1812 The crystal structure of HRP His42Glu mutant co-crystallized with benzhydroxamic acid was solved at a resolution of 2.5 Å. The oxygen atoms of the Glu side-chain occupied positions that are very similar to the two side-chain nitrogen atoms of the distal His in the HRP structure previously reported, supporting the view that His42 of HRP can be substituted with Glu with the peroxidase activity being retained. Because the Glu side-chain is smaller than the His side-chain, the catalytic cavity was enlarged. This enlarged cavity could improve access of a peroxygenase substrate.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 1803-1812
-
-
Meno, K.1
Jennings, S.2
Smith, A.T.3
Henriksen, A.4
Gajhede, M.5
-
32
-
-
0037174181
-
Functional modulation of a peroxygenase cytochrome P450: Novel insight into the mechanisms of peroxygenase and peroxidase enzymes
-
BSβ using TMB. This peroxidase activity is coupled with peroxygenase activity, in which a peroxidase substrate and a peroxygenase substrate use the common highly reactive intermediate in a competitive manner. Molecular engineering and utilization of a deuterium-substituted fatty acid substrate enhanced the peroxidase activity and conversely greatly reduced peroxygenase activity. It should be noted that peroxidase activity was not found in the absence of the fatty acid substrate, indicating the formation of a highly reactive intermediate supported by a fatty acid substrate. If the fatty acid substrate cannot be attacked by this reactive intermediate, TMB can capture it more efficiently, resulting in enhancement in peroxidase activity.
-
BSβ using TMB. This peroxidase activity is coupled with peroxygenase activity, in which a peroxidase substrate and a peroxygenase substrate use the common highly reactive intermediate in a competitive manner. Molecular engineering and utilization of a deuterium-substituted fatty acid substrate enhanced the peroxidase activity and conversely greatly reduced peroxygenase activity. It should be noted that peroxidase activity was not found in the absence of the fatty acid substrate, indicating the formation of a highly reactive intermediate supported by a fatty acid substrate. If the fatty acid substrate cannot be attacked by this reactive intermediate, TMB can capture it more efficiently, resulting in enhancement in peroxidase activity.
-
(2002)
FEBS Lett
, vol.528
, pp. 90-94
-
-
Matsunaga, I.1
Sumimoto, T.2
Ayata, M.3
Ogura, H.4
-
33
-
-
0036525722
-
Construction of heme enzymes: Four approaches
-
Watanabe Y. Construction of heme enzymes: four approaches. Curr Opin Chem Biol. 6:2002;208-216.
-
(2002)
Curr Opin Chem Biol
, vol.6
, pp. 208-216
-
-
Watanabe, Y.1
-
34
-
-
0041823616
-
Molecular engineering of myoglobin: Influence of residue 68 on the rate and the enantioselectivity of oxidation reactions catalyzed by H64D/V68X myoglobin
-
Myoglobin is basically a carrier protein of molecular oxygen, but has little peroxidase and peroxygenase activities. However, the authors investigated the molecular engineering of this hemoprotein to improve such activities. Interestingly, the substitution of His64 with Asp successfully improved both peroxidase and peroxygenase activities. In addition, further substitution of Val68 of the His64Glu mutant with Leu improved peroxygenase activity and showed a higher enantioselectivity. The replacement of Val68 affected enantioselectivity, suggesting that this residue interacts with thioanisol, a substrate.
-
Yang H.J., Matsui T., Ozaki S., Kato S., Ueno T., Phillips G.N. Jr., Fukuzumi S., Watanabe Y. Molecular engineering of myoglobin: influence of residue 68 on the rate and the enantioselectivity of oxidation reactions catalyzed by H64D/V68X myoglobin. Biochemistry. 42:2003;10174-10181 Myoglobin is basically a carrier protein of molecular oxygen, but has little peroxidase and peroxygenase activities. However, the authors investigated the molecular engineering of this hemoprotein to improve such activities. Interestingly, the substitution of His64 with Asp successfully improved both peroxidase and peroxygenase activities. In addition, further substitution of Val68 of the His64Glu mutant with Leu improved peroxygenase activity and showed a higher enantioselectivity. The replacement of Val68 affected enantioselectivity, suggesting that this residue interacts with thioanisol, a substrate.
-
(2003)
Biochemistry
, vol.42
, pp. 10174-10181
-
-
Yang, H.J.1
Matsui, T.2
Ozaki, S.3
Kato, S.4
Ueno, T.5
Phillips, G.N.Jr.6
Fukuzumi, S.7
Watanabe, Y.8
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