-
1
-
-
32044467337
-
L1 integration in a transgenic mouse model
-
Babushok DV, Ostertag EM, Courtney CE, Choi JM, Kazazian HH Jr. 2006. L1 integration in a transgenic mouse model. Genome Res. 16:240-250.
-
(2006)
Genome Res
, vol.16
, pp. 240-250
-
-
Babushok, D.V.1
Ostertag, E.M.2
Courtney, C.E.3
Choi, J.M.4
Kazazian Jr., H.H.5
-
2
-
-
3543044987
-
An X-to-autosome retrogene is required for spermatogenesis in mice
-
Bradley J, Baltus A, Skaletsky H, Royce-Tolland M, Dewar K, Page DC. 2004. An X-to-autosome retrogene is required for spermatogenesis in mice. Nat Genet. 36:872-876.
-
(2004)
Nat Genet
, vol.36
, pp. 872-876
-
-
Bradley, J.1
Baltus, A.2
Skaletsky, H.3
Royce-Tolland, M.4
Dewar, K.5
Page, D.C.6
-
3
-
-
6944242766
-
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux
-
Burki F, Kaessmann H. 2004. Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. Nat Genet. 36:1061-1063.
-
(2004)
Nat Genet
, vol.36
, pp. 1061-1063
-
-
Burki, F.1
Kaessmann, H.2
-
4
-
-
0033082068
-
Molecular structure of canine LINE-1 elements in canine transmissible venereal tumor
-
Choi Y, Ishiguro N, Shinagawa M, Kim CJ, Okamoto Y, Minami S, Ogihara K. 1999. Molecular structure of canine LINE-1 elements in canine transmissible venereal tumor. Anim Genet. 30:51-53.
-
(1999)
Anim Genet
, vol.30
, pp. 51-53
-
-
Choi, Y.1
Ishiguro, N.2
Shinagawa, M.3
Kim, C.J.4
Okamoto, Y.5
Minami, S.6
Ogihara, K.7
-
5
-
-
0036847319
-
Human L1 element target-primed reverse transcription in vitro
-
Cost GJ, Feng Q, Jacquier A, Boeke JD. 2002. Human L1 element target-primed reverse transcription in vitro. Embo J. 21:5899-5910.
-
(2002)
Embo J
, vol.21
, pp. 5899-5910
-
-
Cost, G.J.1
Feng, Q.2
Jacquier, A.3
Boeke, J.D.4
-
6
-
-
0035895567
-
Birth of two chimeric genes in the Hominidae lineage
-
Courseaux A, Nahon JL. 2001. Birth of two chimeric genes in the Hominidae lineage. Science. 291:1293-1297.
-
(2001)
Science
, vol.291
, pp. 1293-1297
-
-
Courseaux, A.1
Nahon, J.L.2
-
8
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M, Esnault C, Heidmann T. 2003. LINE-mediated retrotransposition of marked Alu sequences. Nat Genet. 35:41-48.
-
(2003)
Nat Genet
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
9
-
-
33748042296
-
Initiation factor eIF3 and regulation of mRNA translation, cell growth, and cancer
-
Dong Z, Zhang JT. 2006. Initiation factor eIF3 and regulation of mRNA translation, cell growth, and cancer. Crit Rev Oncol Hematol. 59:169-180.
-
(2006)
Crit Rev Oncol Hematol
, vol.59
, pp. 169-180
-
-
Dong, Z.1
Zhang, J.T.2
-
10
-
-
0037669011
-
Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling
-
Ejima Y, Yang L. 2003. Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling. Hum Mol Genet. 12:1321-1328.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1321-1328
-
-
Ejima, Y.1
Yang, L.2
-
11
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault C, Maestre J, Heidmann T. 2000. Human LINE retrotransposons generate processed pseudogenes. Nat Genet. 24:363-367.
-
(2000)
Nat Genet
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
12
-
-
0034161961
-
Transduction of 3#-flanking sequences is common in L1 retrotransposition
-
Goodier JL, Ostertag EM, Kazazian HH Jr. 2000. Transduction of 3#-flanking sequences is common in L1 retrotransposition. Hum Mol Genet. 9:653-657.
-
(2000)
Hum Mol Genet
, vol.9
, pp. 653-657
-
-
Goodier, J.L.1
Ostertag, E.M.2
Kazazian Jr., H.H.3
-
13
-
-
0032088632
-
Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence
-
Goodman M, Porter CA, Czelusniak J, Page SL, Schneider H, Shoshani J, Gunnell G, Groves CP. 1998. Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. Mol Phylogenet Evol. 9:585-598.
-
(1998)
Mol Phylogenet Evol
, vol.9
, pp. 585-598
-
-
Goodman, M.1
Porter, C.A.2
Czelusniak, J.3
Page, S.L.4
Schneider, H.5
Shoshani, J.6
Gunnell, G.7
Groves, C.P.8
-
14
-
-
0036180936
-
Molecular fossils in the human genome: Identification and analysis of the pseudogenes in chromosomes 21 and 22
-
Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M. 2002. Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22. Genome Res. 12:272-280.
-
(2002)
Genome Res
, vol.12
, pp. 272-280
-
-
Harrison, P.M.1
Hegyi, H.2
Balasubramanian, S.3
Luscombe, N.M.4
Bertone, P.5
Echols, N.6
Johnson, T.7
Gerstein, M.8
-
15
-
-
35748943568
-
Acquisition of endonuclease specificity during evolution of L1 retrotransposon
-
Ichiyanagi K, Nishihara H, Duvernell DD, Okada N. 2007. Acquisition of endonuclease specificity during evolution of L1 retrotransposon. Mol Biol Evol. 24:2009-2015.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2009-2015
-
-
Ichiyanagi, K.1
Nishihara, H.2
Duvernell, D.D.3
Okada, N.4
-
16
-
-
0031055331
-
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
-
Jurka J. 1997. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc Natl Acad Sci USA. 94:1872-1877.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 1872-1877
-
-
Jurka, J.1
-
17
-
-
0036849412
-
LINEs mobilize SINEs in the eel through a shared 3′sequence
-
Kajikawa M, Okada N. 2002. LINEs mobilize SINEs in the eel through a shared 3′sequence. Cell. 111:433-444.
-
(2002)
Cell
, vol.111
, pp. 433-444
-
-
Kajikawa, M.1
Okada, N.2
-
18
-
-
17344370076
-
The impact of L1 retrotransposons on the human genome
-
Kazazian HH Jr, Moran JV. 1998. The impact of L1 retrotransposons on the human genome. Nat Genet. 19:19-24.
-
(1998)
Nat Genet
, vol.19
, pp. 19-24
-
-
Kazazian Jr, H.H.1
Moran, J.V.2
-
19
-
-
1542316940
-
Cross-genome screening of novel sequence-specific non-LTR retrotransposons: Various multicopy RNA genes and microsatellites are selected as targets
-
Kojima KK, Fujiwara H. 2004. Cross-genome screening of novel sequence-specific non-LTR retrotransposons: various multicopy RNA genes and microsatellites are selected as targets. Mol Biol Evol. 21:207-217.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 207-217
-
-
Kojima, K.K.1
Fujiwara, H.2
-
20
-
-
33745864020
-
Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles
-
Kulpa DA, Moran JV. 2006. Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles. Nat Struct Mol Biol. 13:655-660.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 655-660
-
-
Kulpa, D.A.1
Moran, J.V.2
-
21
-
-
2042437650
-
-
Lander ES, Linton LM, Birren B, et al. (100 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
-
Lander ES, Linton LM, Birren B, et al. (100 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
-
-
-
-
22
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell. 72:595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
23
-
-
27844557002
-
Emergence of young human genes after a burst of retroposition in primates
-
Marques AC, Dupanloup I, Vinckenbosch N, Reymond A, Kaessmann H. 2005. Emergence of young human genes after a burst of retroposition in primates. PLoS Biol. 3:e357.
-
(2005)
PLoS Biol
, vol.3
-
-
Marques, A.C.1
Dupanloup, I.2
Vinckenbosch, N.3
Reymond, A.4
Kaessmann, H.5
-
24
-
-
17144418335
-
The structures of mouse and human L1 elements reflect their insertion mechanism
-
Martin SL, Li WL, Furano AV, Boissinot S. 2005. The structures of mouse and human L1 elements reflect their insertion mechanism. Cytogenet Genome Res. 110:223-228.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 223-228
-
-
Martin, S.L.1
Li, W.L.2
Furano, A.V.3
Boissinot, S.4
-
26
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. 2001. Molecular phylogenetics and the origins of placental mammals. Nature. 409:614-618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
27
-
-
1542682570
-
Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
-
Ohshima K, Hattori M, Yada T, Gojobori T, Sakaki Y, Okada N. 2003. Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates. Genome Biol. 4:R74.
-
(2003)
Genome Biol
, vol.4
-
-
Ohshima, K.1
Hattori, M.2
Yada, T.3
Gojobori, T.4
Sakaki, Y.5
Okada, N.6
-
28
-
-
4444301746
-
Essential motifs in the 3′untranslated region required for retrotransposition and the precise start of reverse transcription in non-long-terminal-repeat retrotransposon SART1
-
Osanai M, Takahashi H, Kojima KK, Hamada M, Fujiwara H. 2004. Essential motifs in the 3′untranslated region required for retrotransposition and the precise start of reverse transcription in non-long-terminal-repeat retrotransposon SART1. Mol Cell Biol. 24:7902-7913.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 7902-7913
-
-
Osanai, M.1
Takahashi, H.2
Kojima, K.K.3
Hamada, M.4
Fujiwara, H.5
-
29
-
-
0345636604
-
SVA elements are nonautonomous retrotransposons that cause disease in humans
-
Ostertag EM, Goodier JL, Zhang Y, Kazazian HH Jr. 2003. SVA elements are nonautonomous retrotransposons that cause disease in humans. Am J Hum Genet. 73:1444-1451.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1444-1451
-
-
Ostertag, E.M.1
Goodier, J.L.2
Zhang, Y.3
Kazazian Jr., H.H.4
-
30
-
-
0035208118
-
Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
-
Ostertag EM, Kazazian HH Jr. 2001. Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res. 11:2059-2065.
-
(2001)
Genome Res
, vol.11
, pp. 2059-2065
-
-
Ostertag, E.M.1
Kazazian Jr., H.H.2
-
31
-
-
0342313559
-
Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
-
Pickeral OK, Makalowski W, Boguski MS, Boeke JD. 2000. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. Genome Res. 10:411-415.
-
(2000)
Genome Res
, vol.10
, pp. 411-415
-
-
Pickeral, O.K.1
Makalowski, W.2
Boguski, M.S.3
Boeke, J.D.4
-
32
-
-
4143115756
-
The mouse juvenile spermatogonial depletion (jsd) phenotype is due to a mutation in the X-derived retrogene, mUtp14b
-
Rohozinski J, Bishop CE. 2004. The mouse juvenile spermatogonial depletion (jsd) phenotype is due to a mutation in the X-derived retrogene, mUtp14b. Proc Natl Acad Sci USA. 101:11695-11700.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11695-11700
-
-
Rohozinski, J.1
Bishop, C.E.2
-
33
-
-
0031281264
-
Amplification of CFTR exon 9 sequences to multiple locations in the human genome
-
Rozmahel R, Heng HH, Duncan AM, Shi XM, Rommens JM, Tsui LC. 1997. Amplification of CFTR exon 9 sequences to multiple locations in the human genome. Genomics. 45:554-561.
-
(1997)
Genomics
, vol.45
, pp. 554-561
-
-
Rozmahel, R.1
Heng, H.H.2
Duncan, A.M.3
Shi, X.M.4
Rommens, J.M.5
Tsui, L.C.6
-
34
-
-
3242876747
-
Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1
-
Sayah DM, Sokolskaja E, Berthoux L, Luban J. 2004. Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1. Nature. 430:569-573.
-
(2004)
Nature
, vol.430
, pp. 569-573
-
-
Sayah, D.M.1
Sokolskaja, E.2
Berthoux, L.3
Luban, J.4
-
35
-
-
58249105870
-
Primate-specific spliced PMCHL RNAs are non-protein coding in human and macaque tissues
-
Schmieder S, Darre-Toulemonde F, Arguel MJ, Delerue-Audegond A, Christen R, Nahon JL. 2008. Primate-specific spliced PMCHL RNAs are non-protein coding in human and macaque tissues. BMC Evol Biol. 8:330.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 330
-
-
Schmieder, S.1
Darre-Toulemonde, F.2
Arguel, M.J.3
Delerue-Audegond, A.4
Christen, R.5
Nahon, J.L.6
-
36
-
-
0038136969
-
The p34cdc2-related cyclin-dependent kinase 11 interacts with the p47 subunit of eukaryotic initiation factor 3 during apoptosis
-
Shi J, Feng Y, Goulet AC, Vaillancourt RR, Sachs NA, Hershey JW, Nelson MA. 2003. The p34cdc2-related cyclin-dependent kinase 11 interacts with the p47 subunit of eukaryotic initiation factor 3 during apoptosis. J Biol Chem. 278:5062-5071.
-
(2003)
J Biol Chem
, vol.278
, pp. 5062-5071
-
-
Shi, J.1
Feng, Y.2
Goulet, A.C.3
Vaillancourt, R.R.4
Sachs, N.A.5
Hershey, J.W.6
Nelson, M.A.7
-
37
-
-
0037168586
-
-
Strausberg RL, Feingold EA, Grouse LH, et al. (83 co-authors). 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci USA. 99:16899-16903.
-
Strausberg RL, Feingold EA, Grouse LH, et al. (83 co-authors). 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci USA. 99:16899-16903.
-
-
-
-
38
-
-
0003308786
-
-
Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD. 2002. Molecular archeology of L1 insertions in the human genome. Genome Biol. 3: research0052:1-18.
-
Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD. 2002. Molecular archeology of L1 insertions in the human genome. Genome Biol. 3: research0052:1-18.
-
-
-
-
39
-
-
0022293979
-
Processed pseudogenes: Characteristics and evolution
-
Vanin EF. 1985. Processed pseudogenes: characteristics and evolution. Annu Rev Genet. 19:253-272.
-
(1985)
Annu Rev Genet
, vol.19
, pp. 253-272
-
-
Vanin, E.F.1
-
41
-
-
0035144498
-
Human L1 retrotransposition: Cis preference versus trans complementation
-
Wei W, Gilbert N, Ooi SL, Lawler JF, Ostertag EM, Kazazian HH, Boeke JD, Moran JV. 2001. Human L1 retrotransposition: cis preference versus trans complementation. Mol Cell Biol. 21:1429-1439.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
Kazazian, H.H.6
Boeke, J.D.7
Moran, J.V.8
-
42
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
43
-
-
35648987151
-
Analysis of the role of retrotransposition in gene evolution in vertebrates
-
Yu Z, Morais D, Ivanga M, Harrison PM. 2007. Analysis of the role of retrotransposition in gene evolution in vertebrates. BMC Bioinformatics. 8:308.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 308
-
-
Yu, Z.1
Morais, D.2
Ivanga, M.3
Harrison, P.M.4
-
44
-
-
22344444224
-
Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining
-
Zingler N, Willhoeft U, Brose HP, Schoder V, Jahns T, Hanschmann KM, Morrish TA, Lower J, Schumann GG. 2005. Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining. Genome Res. 15:780-789.
-
(2005)
Genome Res
, vol.15
, pp. 780-789
-
-
Zingler, N.1
Willhoeft, U.2
Brose, H.P.3
Schoder, V.4
Jahns, T.5
Hanschmann, K.M.6
Morrish, T.A.7
Lower, J.8
Schumann, G.G.9
|