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Volumn 26, Issue 6, 2009, Pages 1405-1420

MRNA retrotransposition coupled with 5′ inversion as a possible source of new genes

Author keywords

Inversion; L1; Retrocopy; Retrogene; Retrotransposition; Twin priming

Indexed keywords

INITIATION FACTOR 3; MESSENGER RNA; POLYPEPTIDE; SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE N; THYMOPOIETIN; THYMOPOIETIN BETA; UNCLASSIFIED DRUG;

EID: 66249132041     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp050     Document Type: Article
Times cited : (9)

References (44)
  • 3
    • 6944242766 scopus 로고    scopus 로고
    • Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux
    • Burki F, Kaessmann H. 2004. Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. Nat Genet. 36:1061-1063.
    • (2004) Nat Genet , vol.36 , pp. 1061-1063
    • Burki, F.1    Kaessmann, H.2
  • 5
    • 0036847319 scopus 로고    scopus 로고
    • Human L1 element target-primed reverse transcription in vitro
    • Cost GJ, Feng Q, Jacquier A, Boeke JD. 2002. Human L1 element target-primed reverse transcription in vitro. Embo J. 21:5899-5910.
    • (2002) Embo J , vol.21 , pp. 5899-5910
    • Cost, G.J.1    Feng, Q.2    Jacquier, A.3    Boeke, J.D.4
  • 6
    • 0035895567 scopus 로고    scopus 로고
    • Birth of two chimeric genes in the Hominidae lineage
    • Courseaux A, Nahon JL. 2001. Birth of two chimeric genes in the Hominidae lineage. Science. 291:1293-1297.
    • (2001) Science , vol.291 , pp. 1293-1297
    • Courseaux, A.1    Nahon, J.L.2
  • 8
    • 0041353551 scopus 로고    scopus 로고
    • LINE-mediated retrotransposition of marked Alu sequences
    • Dewannieux M, Esnault C, Heidmann T. 2003. LINE-mediated retrotransposition of marked Alu sequences. Nat Genet. 35:41-48.
    • (2003) Nat Genet , vol.35 , pp. 41-48
    • Dewannieux, M.1    Esnault, C.2    Heidmann, T.3
  • 9
    • 33748042296 scopus 로고    scopus 로고
    • Initiation factor eIF3 and regulation of mRNA translation, cell growth, and cancer
    • Dong Z, Zhang JT. 2006. Initiation factor eIF3 and regulation of mRNA translation, cell growth, and cancer. Crit Rev Oncol Hematol. 59:169-180.
    • (2006) Crit Rev Oncol Hematol , vol.59 , pp. 169-180
    • Dong, Z.1    Zhang, J.T.2
  • 10
    • 0037669011 scopus 로고    scopus 로고
    • Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling
    • Ejima Y, Yang L. 2003. Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling. Hum Mol Genet. 12:1321-1328.
    • (2003) Hum Mol Genet , vol.12 , pp. 1321-1328
    • Ejima, Y.1    Yang, L.2
  • 11
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • Esnault C, Maestre J, Heidmann T. 2000. Human LINE retrotransposons generate processed pseudogenes. Nat Genet. 24:363-367.
    • (2000) Nat Genet , vol.24 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 12
    • 0034161961 scopus 로고    scopus 로고
    • Transduction of 3#-flanking sequences is common in L1 retrotransposition
    • Goodier JL, Ostertag EM, Kazazian HH Jr. 2000. Transduction of 3#-flanking sequences is common in L1 retrotransposition. Hum Mol Genet. 9:653-657.
    • (2000) Hum Mol Genet , vol.9 , pp. 653-657
    • Goodier, J.L.1    Ostertag, E.M.2    Kazazian Jr., H.H.3
  • 15
    • 35748943568 scopus 로고    scopus 로고
    • Acquisition of endonuclease specificity during evolution of L1 retrotransposon
    • Ichiyanagi K, Nishihara H, Duvernell DD, Okada N. 2007. Acquisition of endonuclease specificity during evolution of L1 retrotransposon. Mol Biol Evol. 24:2009-2015.
    • (2007) Mol Biol Evol , vol.24 , pp. 2009-2015
    • Ichiyanagi, K.1    Nishihara, H.2    Duvernell, D.D.3    Okada, N.4
  • 16
    • 0031055331 scopus 로고    scopus 로고
    • Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
    • Jurka J. 1997. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc Natl Acad Sci USA. 94:1872-1877.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1872-1877
    • Jurka, J.1
  • 17
    • 0036849412 scopus 로고    scopus 로고
    • LINEs mobilize SINEs in the eel through a shared 3′sequence
    • Kajikawa M, Okada N. 2002. LINEs mobilize SINEs in the eel through a shared 3′sequence. Cell. 111:433-444.
    • (2002) Cell , vol.111 , pp. 433-444
    • Kajikawa, M.1    Okada, N.2
  • 18
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian HH Jr, Moran JV. 1998. The impact of L1 retrotransposons on the human genome. Nat Genet. 19:19-24.
    • (1998) Nat Genet , vol.19 , pp. 19-24
    • Kazazian Jr, H.H.1    Moran, J.V.2
  • 19
    • 1542316940 scopus 로고    scopus 로고
    • Cross-genome screening of novel sequence-specific non-LTR retrotransposons: Various multicopy RNA genes and microsatellites are selected as targets
    • Kojima KK, Fujiwara H. 2004. Cross-genome screening of novel sequence-specific non-LTR retrotransposons: various multicopy RNA genes and microsatellites are selected as targets. Mol Biol Evol. 21:207-217.
    • (2004) Mol Biol Evol , vol.21 , pp. 207-217
    • Kojima, K.K.1    Fujiwara, H.2
  • 20
    • 33745864020 scopus 로고    scopus 로고
    • Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles
    • Kulpa DA, Moran JV. 2006. Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles. Nat Struct Mol Biol. 13:655-660.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 655-660
    • Kulpa, D.A.1    Moran, J.V.2
  • 21
    • 2042437650 scopus 로고    scopus 로고
    • Lander ES, Linton LM, Birren B, et al. (100 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
    • Lander ES, Linton LM, Birren B, et al. (100 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
  • 22
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan DD, Korman MH, Jakubczak JL, Eickbush TH. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell. 72:595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 24
    • 17144418335 scopus 로고    scopus 로고
    • The structures of mouse and human L1 elements reflect their insertion mechanism
    • Martin SL, Li WL, Furano AV, Boissinot S. 2005. The structures of mouse and human L1 elements reflect their insertion mechanism. Cytogenet Genome Res. 110:223-228.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 223-228
    • Martin, S.L.1    Li, W.L.2    Furano, A.V.3    Boissinot, S.4
  • 27
    • 1542682570 scopus 로고    scopus 로고
    • Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
    • Ohshima K, Hattori M, Yada T, Gojobori T, Sakaki Y, Okada N. 2003. Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates. Genome Biol. 4:R74.
    • (2003) Genome Biol , vol.4
    • Ohshima, K.1    Hattori, M.2    Yada, T.3    Gojobori, T.4    Sakaki, Y.5    Okada, N.6
  • 28
    • 4444301746 scopus 로고    scopus 로고
    • Essential motifs in the 3′untranslated region required for retrotransposition and the precise start of reverse transcription in non-long-terminal-repeat retrotransposon SART1
    • Osanai M, Takahashi H, Kojima KK, Hamada M, Fujiwara H. 2004. Essential motifs in the 3′untranslated region required for retrotransposition and the precise start of reverse transcription in non-long-terminal-repeat retrotransposon SART1. Mol Cell Biol. 24:7902-7913.
    • (2004) Mol Cell Biol , vol.24 , pp. 7902-7913
    • Osanai, M.1    Takahashi, H.2    Kojima, K.K.3    Hamada, M.4    Fujiwara, H.5
  • 29
    • 0345636604 scopus 로고    scopus 로고
    • SVA elements are nonautonomous retrotransposons that cause disease in humans
    • Ostertag EM, Goodier JL, Zhang Y, Kazazian HH Jr. 2003. SVA elements are nonautonomous retrotransposons that cause disease in humans. Am J Hum Genet. 73:1444-1451.
    • (2003) Am J Hum Genet , vol.73 , pp. 1444-1451
    • Ostertag, E.M.1    Goodier, J.L.2    Zhang, Y.3    Kazazian Jr., H.H.4
  • 30
    • 0035208118 scopus 로고    scopus 로고
    • Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
    • Ostertag EM, Kazazian HH Jr. 2001. Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res. 11:2059-2065.
    • (2001) Genome Res , vol.11 , pp. 2059-2065
    • Ostertag, E.M.1    Kazazian Jr., H.H.2
  • 31
    • 0342313559 scopus 로고    scopus 로고
    • Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
    • Pickeral OK, Makalowski W, Boguski MS, Boeke JD. 2000. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. Genome Res. 10:411-415.
    • (2000) Genome Res , vol.10 , pp. 411-415
    • Pickeral, O.K.1    Makalowski, W.2    Boguski, M.S.3    Boeke, J.D.4
  • 32
    • 4143115756 scopus 로고    scopus 로고
    • The mouse juvenile spermatogonial depletion (jsd) phenotype is due to a mutation in the X-derived retrogene, mUtp14b
    • Rohozinski J, Bishop CE. 2004. The mouse juvenile spermatogonial depletion (jsd) phenotype is due to a mutation in the X-derived retrogene, mUtp14b. Proc Natl Acad Sci USA. 101:11695-11700.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11695-11700
    • Rohozinski, J.1    Bishop, C.E.2
  • 33
    • 0031281264 scopus 로고    scopus 로고
    • Amplification of CFTR exon 9 sequences to multiple locations in the human genome
    • Rozmahel R, Heng HH, Duncan AM, Shi XM, Rommens JM, Tsui LC. 1997. Amplification of CFTR exon 9 sequences to multiple locations in the human genome. Genomics. 45:554-561.
    • (1997) Genomics , vol.45 , pp. 554-561
    • Rozmahel, R.1    Heng, H.H.2    Duncan, A.M.3    Shi, X.M.4    Rommens, J.M.5    Tsui, L.C.6
  • 34
    • 3242876747 scopus 로고    scopus 로고
    • Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1
    • Sayah DM, Sokolskaja E, Berthoux L, Luban J. 2004. Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1. Nature. 430:569-573.
    • (2004) Nature , vol.430 , pp. 569-573
    • Sayah, D.M.1    Sokolskaja, E.2    Berthoux, L.3    Luban, J.4
  • 36
    • 0038136969 scopus 로고    scopus 로고
    • The p34cdc2-related cyclin-dependent kinase 11 interacts with the p47 subunit of eukaryotic initiation factor 3 during apoptosis
    • Shi J, Feng Y, Goulet AC, Vaillancourt RR, Sachs NA, Hershey JW, Nelson MA. 2003. The p34cdc2-related cyclin-dependent kinase 11 interacts with the p47 subunit of eukaryotic initiation factor 3 during apoptosis. J Biol Chem. 278:5062-5071.
    • (2003) J Biol Chem , vol.278 , pp. 5062-5071
    • Shi, J.1    Feng, Y.2    Goulet, A.C.3    Vaillancourt, R.R.4    Sachs, N.A.5    Hershey, J.W.6    Nelson, M.A.7
  • 37
    • 0037168586 scopus 로고    scopus 로고
    • Strausberg RL, Feingold EA, Grouse LH, et al. (83 co-authors). 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci USA. 99:16899-16903.
    • Strausberg RL, Feingold EA, Grouse LH, et al. (83 co-authors). 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci USA. 99:16899-16903.
  • 38
    • 0003308786 scopus 로고    scopus 로고
    • Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD. 2002. Molecular archeology of L1 insertions in the human genome. Genome Biol. 3: research0052:1-18.
    • Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD. 2002. Molecular archeology of L1 insertions in the human genome. Genome Biol. 3: research0052:1-18.
  • 39
    • 0022293979 scopus 로고
    • Processed pseudogenes: Characteristics and evolution
    • Vanin EF. 1985. Processed pseudogenes: characteristics and evolution. Annu Rev Genet. 19:253-272.
    • (1985) Annu Rev Genet , vol.19 , pp. 253-272
    • Vanin, E.F.1
  • 40
    • 33644777605 scopus 로고    scopus 로고
    • Evolutionary fate of retroposed gene copies in the human genome
    • Vinckenbosch N, Dupanloup I, Kaessmann H. 2006. Evolutionary fate of retroposed gene copies in the human genome. Proc Natl Acad Sci USA. 103:3220-3225.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 3220-3225
    • Vinckenbosch, N.1    Dupanloup, I.2    Kaessmann, H.3
  • 42
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 43
    • 35648987151 scopus 로고    scopus 로고
    • Analysis of the role of retrotransposition in gene evolution in vertebrates
    • Yu Z, Morais D, Ivanga M, Harrison PM. 2007. Analysis of the role of retrotransposition in gene evolution in vertebrates. BMC Bioinformatics. 8:308.
    • (2007) BMC Bioinformatics , vol.8 , pp. 308
    • Yu, Z.1    Morais, D.2    Ivanga, M.3    Harrison, P.M.4
  • 44
    • 22344444224 scopus 로고    scopus 로고
    • Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining
    • Zingler N, Willhoeft U, Brose HP, Schoder V, Jahns T, Hanschmann KM, Morrish TA, Lower J, Schumann GG. 2005. Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining. Genome Res. 15:780-789.
    • (2005) Genome Res , vol.15 , pp. 780-789
    • Zingler, N.1    Willhoeft, U.2    Brose, H.P.3    Schoder, V.4    Jahns, T.5    Hanschmann, K.M.6    Morrish, T.A.7    Lower, J.8    Schumann, G.G.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.