메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Genomic analysis reveals extensive gene duplication within the bovine TRB locus

Author keywords

[No Author keywords available]

Indexed keywords

T LYMPHOCYTE RECEPTOR BETA CHAIN; COMPLEMENTARY DNA;

EID: 65649153981     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-192     Document Type: Article
Times cited : (35)

References (107)
  • 1
    • 1142274484 scopus 로고    scopus 로고
    • The many important facets of T-cell repertoire diversity
    • 10.1038/nri1292 15040585
    • Nikolich-Zugich J Slifka MK Messaoudi I The many important facets of T-cell repertoire diversity Nat Rev Immunol 2004, 4(2):123-132. 10.1038/ nri1292 15040585
    • (2004) Nat Rev Immunol , vol.4 , Issue.2 , pp. 123-132
    • Nikolich-Zugich, J.1    Slifka, M.K.2    Messaoudi, I.3
  • 2
    • 0033615678 scopus 로고    scopus 로고
    • A direct estimate of the human alphabeta T cell receptor diversity
    • 10.1126/science.286.5441.958 10542151
    • Arstila TP Casrouge A Baron V Even J Kanellopoulos J Kourilsky P A direct estimate of the human alphabeta T cell receptor diversity Science 1999, 286(5441):958-961. 10.1126/science.286.5441.958 10542151
    • (1999) Science , vol.286 , Issue.5441 , pp. 958-961
    • Arstila, T.P.1    Casrouge, A.2    Baron, V.3    Even, J.4    Kanellopoulos, J.5    Kourilsky, P.6
  • 4
    • 0029855347 scopus 로고    scopus 로고
    • Structure of the complex between human T-cell receptor, viral peptide and HLA-A2
    • 10.1038/384134a0 8906788
    • Garboczi DN Ghosh P Utz U Fan QR Biddison WE Wiley DC Structure of the complex between human T-cell receptor, viral peptide and HLA-A2 Nature 1996, 384(6605):134-141. 10.1038/384134a0 8906788
    • (1996) Nature , vol.384 , Issue.6605 , pp. 134-141
    • Garboczi, D.N.1    Ghosh, P.2    Utz, U.3    Fan, Q.R.4    Biddison, W.E.5    Wiley, D.C.6
  • 5
    • 0029662223 scopus 로고    scopus 로고
    • An alphabeta T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex
    • 10.1126/science.274.5285.209 8824178
    • Garcia KC Degano M Stanfield RL Brunmark A Jackson MR Peterson PA Teyton L Wilson IA An alphabeta T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex Science 1996, 274(5285):209-219. 10.1126/science.274.5285.209 8824178
    • (1996) Science , vol.274 , Issue.5285 , pp. 209-219
    • Garcia, K.C.1    Degano, M.2    Stanfield, R.L.3    Brunmark, A.4    Jackson, M.R.5    Peterson, P.A.6    Teyton, L.7    Wilson, I.A.8
  • 6
    • 0021226135 scopus 로고
    • Chromosomal location of human T-cell receptor gene Ti beta
    • 10.1126/science.6435246 6435246
    • Barker PE Ruddle FH Royer HD Acuto O Reinherz EL Chromosomal location of human T-cell receptor gene Ti beta Science 1984, 226(4672):348-349. 10.1126/science.6435246 6435246
    • (1984) Science , vol.226 , Issue.4672 , pp. 348-349
    • Barker, P.E.1    Ruddle, F.H.2    Royer, H.D.3    Acuto, O.4    Reinherz, E.L.5
  • 8
    • 0021796166 scopus 로고
    • Location of gene for beta subunit of human T-cell receptor at band 7q35, a region prone to rearrangements in T cells
    • 10.1126/science.3983641 3983641
    • Isobe M Erikson J Emanuel BS Nowell PC Croce CM Location of gene for beta subunit of human T-cell receptor at band 7q35, a region prone to rearrangements in T cells Science 1985, 228(4699):580-582. 10.1126/ science.3983641 3983641
    • (1985) Science , vol.228 , Issue.4699 , pp. 580-582
    • Isobe, M.1    Erikson, J.2    Emanuel, B.S.3    Nowell, P.C.4    Croce, C.M.5
  • 9
    • 0034807024 scopus 로고    scopus 로고
    • Comparative genomics of the human and mouse T cell receptor loci
    • 10.1016/S1074-7613(01)00200-X 11567625
    • Glusman G Rowen L Lee I Boysen C Roach JC Smit AF Wang K Koop BF Hood L Comparative genomics of the human and mouse T cell receptor loci Immunity 2001, 15(3):337-349. 10.1016/S1074-7613(01)00200-X 11567625
    • (2001) Immunity , vol.15 , Issue.3 , pp. 337-349
    • Glusman, G.1    Rowen, L.2    Lee, I.3    Boysen, C.4    Roach, J.C.5    Smit, A.F.6    Wang, K.7    Koop, B.F.8    Hood, L.9
  • 10
    • 0030017526 scopus 로고    scopus 로고
    • The complete 685-kilobase DNA sequence of the human beta T cell receptor locus
    • 10.1126/science.272.5269.1755 8650574
    • Rowen L Koop BF Hood L The complete 685-kilobase DNA sequence of the human beta T cell receptor locus Science 1996, 272(5269):1755-1762. 10.1126/science.272.5269.1755 8650574
    • (1996) Science , vol.272 , Issue.5269 , pp. 1755-1762
    • Rowen, L.1    Koop, B.F.2    Hood, L.3
  • 11
    • 0033667369 scopus 로고    scopus 로고
    • The mouse (Mus musculus) T cell receptor beta variable (TRBV), diversity (TRBD) and joining (TRBJ) genes
    • 10.1159/000019141 11096260
    • Bosc N Lefranc MP The mouse (Mus musculus) T cell receptor beta variable (TRBV), diversity (TRBD) and joining (TRBJ) genes Exp Clin Immunogenet 2000, 17(4):216-228. 10.1159/000019141 11096260
    • (2000) Exp Clin Immunogenet , vol.17 , Issue.4 , pp. 216-228
    • Bosc, N.1    Lefranc, M.P.2
  • 12
    • 0033975615 scopus 로고    scopus 로고
    • The human T cell receptor beta variable (TRBV) genes
    • 10.1159/000019123 10686482
    • Folch G Lefranc MP The human T cell receptor beta variable (TRBV) genes Exp Clin Immunogenet 2000, 17(1):42-54. 10.1159/000019123 10686482
    • (2000) Exp Clin Immunogenet , vol.17 , Issue.1 , pp. 42-54
    • Folch, G.1    Lefranc, M.P.2
  • 13
    • 0035061229 scopus 로고    scopus 로고
    • Evolutionary dynamics of the T-cell receptor VB gene family as inferred from the human and mouse genomic sequences
    • 11264401
    • Su C Nei M Evolutionary dynamics of the T-cell receptor VB gene family as inferred from the human and mouse genomic sequences Mol Biol Evol 2001, 18(4):503-513. 11264401
    • (2001) Mol Biol Evol , vol.18 , Issue.4 , pp. 503-513
    • Su, C.1    Nei, M.2
  • 14
    • 0028805853 scopus 로고
    • Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps
    • 10.1016/0092-8674(95)90116-7 8521468
    • McBlane JF van Gent DC Ramsden DA Romeo C Cuomo CA Gellert M Oettinger MA Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps Cell 1995, 83(3):387-395. 10.1016/ 0092-8674(95)90116-7 8521468
    • (1995) Cell , vol.83 , Issue.3 , pp. 387-395
    • McBlane, J.F.1    van Gent, D.C.2    Ramsden, D.A.3    Romeo, C.4    Cuomo, C.A.5    Gellert, M.6    Oettinger, M.A.7
  • 17
    • 0020534965 scopus 로고
    • Somatic generation of antibody diversity
    • 10.1038/302575a0 6300689
    • Tonegawa S Somatic generation of antibody diversity Nature 1983, 302(5909):575-581. 10.1038/302575a0 6300689
    • (1983) Nature , vol.302 , Issue.5909 , pp. 575-581
    • Tonegawa, S.1
  • 18
    • 0037625160 scopus 로고    scopus 로고
    • Gene segment selection in V(D)J recombination: Accessibility and beyond
    • 10.1038/ni0703-624 12830137
    • Krangel MS Gene segment selection in V(D)J recombination: Accessibility and beyond Nat Immunol 2003, 4(7):624-630. 10.1038/ni0703-624 12830137
    • (2003) Nat Immunol , vol.4 , Issue.7 , pp. 624-630
    • Krangel, M.S.1
  • 19
    • 0038148400 scopus 로고    scopus 로고
    • Chromatin dynamics and locus accessibility in the immune system
    • 10.1038/ni0703-603 12830134
    • Mostoslavsky R Alt FW Bassing CH Chromatin dynamics and locus accessibility in the immune system Nat Immunol 2003, 4(7):603-606. 10.1038/ni0703-603 12830134
    • (2003) Nat Immunol , vol.4 , Issue.7 , pp. 603-606
    • Mostoslavsky, R.1    Alt, F.W.2    Bassing, C.H.3
  • 20
    • 0242468050 scopus 로고    scopus 로고
    • Regulating antigen-receptor gene assembly
    • 10.1038/nri1225 14668805
    • Schlissel MS Regulating antigen-receptor gene assembly Nat Rev Immunol 2003, 3(11):890-899. 10.1038/nri1225 14668805
    • (2003) Nat Rev Immunol , vol.3 , Issue.11 , pp. 890-899
    • Schlissel, M.S.1
  • 21
    • 0029819322 scopus 로고    scopus 로고
    • Gene-targeted deletion and replacement mutations of the T-cell receptor beta-chain enhancer: The role of enhancer elements in controlling V(D)J recombination accessibility
    • 38841 8755569 10.1073/pnas.93.15.7871
    • Bories JC Demengeot J Davidson L Alt FW Gene-targeted deletion and replacement mutations of the T-cell receptor beta-chain enhancer: The role of enhancer elements in controlling V(D)J recombination accessibility Proc Natl Acad Sci USA 1996, 93(15):7871-7876. 38841 8755569 10.1073/pnas.93.15.7871
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.15 , pp. 7871-7876
    • Bories, J.C.1    Demengeot, J.2    Davidson, L.3    Alt, F.W.4
  • 22
    • 0029842562 scopus 로고    scopus 로고
    • Deletion of the mouse T-cell receptor beta gene enhancer blocks alphabeta T-cell development
    • 38842 8755570 10.1073/pnas.93.15.7877
    • Bouvier G Watrin F Naspetti M Verthuy C Naquet P Ferrier P Deletion of the mouse T-cell receptor beta gene enhancer blocks alphabeta T-cell development Proc Natl Acad Sci USA 1996, 93(15):7877-7881. 38842 8755570 10.1073/pnas.93.15.7877
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.15 , pp. 7877-7881
    • Bouvier, G.1    Watrin, F.2    Naspetti, M.3    Verthuy, C.4    Naquet, P.5    Ferrier, P.6
  • 23
    • 0034605064 scopus 로고    scopus 로고
    • Chromatin remodeling by the T cell receptor (TCR)-beta gene enhancer during early T cell development: Implications for the control of TCR-beta locus recombination
    • 2193263 10974029 10.1084/jem.192.5.625
    • Mathieu N Hempel WM Spicuglia S Verthuy C Ferrier P Chromatin remodeling by the T cell receptor (TCR)-beta gene enhancer during early T cell development: Implications for the control of TCR-beta locus recombination J Exp Med 2000, 192(5):625-636. 2193263 10974029 10.1084/ jem.192.5.625
    • (2000) J Exp Med , vol.192 , Issue.5 , pp. 625-636
    • Mathieu, N.1    Hempel, W.M.2    Spicuglia, S.3    Verthuy, C.4    Ferrier, P.5
  • 24
    • 33646007633 scopus 로고    scopus 로고
    • Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplex
    • 10.1016/j.immuni.2006.02.009 16618597
    • Oestreich KJ Cobb RM Pierce S Chen J Ferrier P Oltz EM Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplex Immunity 2006, 24(4):381-391. 10.1016/j.immuni.2006.02.009 16618597
    • (2006) Immunity , vol.24 , Issue.4 , pp. 381-391
    • Oestreich, K.J.1    Cobb, R.M.2    Pierce, S.3    Chen, J.4    Ferrier, P.5    Oltz, E.M.6
  • 25
    • 3543011330 scopus 로고    scopus 로고
    • The T-cell receptor beta variable gene promoter is required for efficient V beta rearrangement but not allelic exclusion
    • 479718 15282302 10.1128/MCB.24.16.7015-7023.2004
    • Ryu CJ Haines BB Lee HR Kang YH Draganov DD Lee M Whitehurst CE Hong HJ Chen J The T-cell receptor beta variable gene promoter is required for efficient V beta rearrangement but not allelic exclusion Mol Cell Biol 2004, 24(16):7015-7023. 479718 15282302 10.1128/MCB.24.16.7015-7023.2004
    • (2004) Mol Cell Biol , vol.24 , Issue.16 , pp. 7015-7023
    • Ryu, C.J.1    Haines, B.B.2    Lee, H.R.3    Kang, Y.H.4    Draganov, D.D.5    Lee, M.6    Whitehurst, C.E.7    Hong, H.J.8    Chen, J.9
  • 26
    • 0032958101 scopus 로고    scopus 로고
    • Regulation of V(D)J recombination by transcriptional promoters
    • 84070 10082543
    • Sikes ML Suarez CC Oltz EM Regulation of V(D)J recombination by transcriptional promoters Mol Cell Biol 1999, 19(4):2773-2781. 84070 10082543
    • (1999) Mol Cell Biol , vol.19 , Issue.4 , pp. 2773-2781
    • Sikes, M.L.1    Suarez, C.C.2    Oltz, E.M.3
  • 27
    • 0033103012 scopus 로고    scopus 로고
    • Control of V(D)J recombinational accessibility of the D beta 1 gene segment at the TCR beta locus by a germline promoter
    • 10.1016/S1074-7613(00)80031-X 10204487
    • Whitehurst CE Chattopadhyay S Chen J Control of V(D)J recombinational accessibility of the D beta 1 gene segment at the TCR beta locus by a germline promoter Immunity 1999, 10(3):313-322. 10.1016/ S1074-7613(00)80031-X 10204487
    • (1999) Immunity , vol.10 , Issue.3 , pp. 313-322
    • Whitehurst, C.E.1    Chattopadhyay, S.2    Chen, J.3
  • 28
    • 0035865199 scopus 로고    scopus 로고
    • A particular TCR beta variable region used by T cells infiltrating kidney transplants
    • 11160320
    • Baron C Sachs DH LeGuern C A particular TCR beta variable region used by T cells infiltrating kidney transplants J Immunol 2001, 166(4):2589-2596. 11160320
    • (2001) J Immunol , vol.166 , Issue.4 , pp. 2589-2596
    • Baron, C.1    Sachs, D.H.2    LeGuern, C.3
  • 29
    • 13444251051 scopus 로고    scopus 로고
    • Comparison of the expressed porcine Vbeta and Jbeta repertoire of thymocytes and peripheral T cells
    • 1782068 15667563 10.1111/j.1365-2567.2004.02072.x
    • Butler JE Wertz N Sun J Sacco RE Comparison of the expressed porcine Vbeta and Jbeta repertoire of thymocytes and peripheral T cells Immunology 2005, 114(2):184-193. 1782068 15667563 10.1111/ j.1365-2567.2004.02072.x
    • (2005) Immunology , vol.114 , Issue.2 , pp. 184-193
    • Butler, J.E.1    Wertz, N.2    Sun, J.3    Sacco, R.E.4
  • 30
    • 0032900946 scopus 로고    scopus 로고
    • Analysis of sheep T-cell receptor beta-chain heterogeneity
    • 10.1007/s002510050481 9914334
    • Halsey WA Jr Palmer BE DeMartini JC Howell MD Analysis of sheep T-cell receptor beta-chain heterogeneity Immunogenetics 1999, 49(3):206-214. 10.1007/s002510050481 9914334
    • (1999) Immunogenetics , vol.49 , Issue.3 , pp. 206-214
    • Halsey Jr., W.A.1    Palmer, B.E.2    DeMartini, J.C.3    Howell, M.D.4
  • 31
    • 43049173755 scopus 로고    scopus 로고
    • Dissection of the clonal composition of bovine alphabeta T cell responses using T cell receptor Vbeta subfamily-specific PCR and heteroduplex analysis
    • 10.1016/j.jim.2008.02.015 18436232
    • Connelley T MacHugh ND Burrells A Morrison WI Dissection of the clonal composition of bovine alphabeta T cell responses using T cell receptor Vbeta subfamily-specific PCR and heteroduplex analysis J Immunol Methods 2008, 335(1-2):28-40. 10.1016/j.jim.2008.02.015 18436232
    • (2008) J Immunol Methods , vol.335 , Issue.1-2 , pp. 28-40
    • Connelley, T.1    MacHugh, N.D.2    Burrells, A.3    Morrison, W.I.4
  • 32
    • 26844490647 scopus 로고    scopus 로고
    • Analysis of T-cell receptor BV gene sequences in cattle reveals extensive duplication within the BV9 and BV20 subgroups
    • 10.1007/s00251-005-0040-y 16187058
    • Houston EF Connelley T Parsons K MacHugh ND Morrison WI Analysis of T-cell receptor BV gene sequences in cattle reveals extensive duplication within the BV9 and BV20 subgroups Immunogenetics 2005, 57(9):674-681. 10.1007/s00251-005-0040-y 16187058
    • (2005) Immunogenetics , vol.57 , Issue.9 , pp. 674-681
    • Houston, E.F.1    Connelley, T.2    Parsons, K.3    MacHugh, N.D.4    Morrison, W.I.5
  • 33
    • 0032860909 scopus 로고    scopus 로고
    • Identification of seven new TCRBV subfamilies in cattle (Bos taurus)
    • 10.1046/j.1365-2370.1999.00169.x 10553501
    • Houston EF Morrison WI Identification of seven new TCRBV subfamilies in cattle (Bos taurus) Eur J Immunogenet 1999, 26(5):349-353. 10.1046/ j.1365-2370.1999.00169.x 10553501
    • (1999) Eur J Immunogenet , vol.26 , Issue.5 , pp. 349-353
    • Houston, E.F.1    Morrison, W.I.2
  • 34
    • 0025066253 scopus 로고
    • Sequence and diversity of bovine T-cell receptor beta-chain genes
    • 10.1007/BF00187097 1700762
    • Tanaka A Ishiguro N Shinagawa M Sequence and diversity of bovine T-cell receptor beta-chain genes Immunogenetics 1990, 32(4):263-271. 10.1007/ BF00187097 1700762
    • (1990) Immunogenetics , vol.32 , Issue.4 , pp. 263-271
    • Tanaka, A.1    Ishiguro, N.2    Shinagawa, M.3
  • 35
    • 33846198428 scopus 로고    scopus 로고
    • Porcine T-cell receptor beta-chain: A genomic sequence covering Dbeta1.1 to Cbeta2 gene segments and the diversity of cDNA expressed in piglets including novel alternative splicing products
    • 10.1016/j.molimm.2006.10.021 17118451
    • Watanabe M Iwasaki Y Mita Y Ota S Yamada S Shimizu M Takagaki Y Porcine T-cell receptor beta-chain: A genomic sequence covering Dbeta1.1 to Cbeta2 gene segments and the diversity of cDNA expressed in piglets including novel alternative splicing products Mol Immunol 2007, 44(9):2332-2343. 10.1016/j.molimm.2006.10.021 17118451
    • (2007) Mol Immunol , vol.44 , Issue.9 , pp. 2332-2343
    • Watanabe, M.1    Iwasaki, Y.2    Mita, Y.3    Ota, S.4    Yamada, S.5    Shimizu, M.6    Takagaki, Y.7
  • 36
    • 34548221833 scopus 로고    scopus 로고
    • Organization, structure and evolution of 41 kb of genomic DNA spanning the D-J-C region of the sheep TRB locus
    • 10.1016/j.molimm.2007.05.023 17673294
    • Antonacci R Di Tommaso S Lanave C Cribiu EP Ciccarese S Massari S Organization, structure and evolution of 41 kb of genomic DNA spanning the D-J-C region of the sheep TRB locus Mol Immunol 2008, 45(2):493-509. 10.1016/j.molimm.2007.05.023 17673294
    • (2008) Mol Immunol , vol.45 , Issue.2 , pp. 493-509
    • Antonacci, R.1    Di Tommaso, S.2    Lanave, C.3    Cribiu, E.P.4    Ciccarese, S.5    Massari, S.6
  • 38
    • 0034767514 scopus 로고    scopus 로고
    • Assignment of the TRB@ locus encoding the T-cell receptor beta chain to sheep, cattle, goat and river buffalo chromosomes by in situ hybridization
    • 10.1159/000048788 11701960
    • Antonacci R Massari S De Iaco R Ciccarese S Assignment of the TRB@ locus encoding the T-cell receptor beta chain to sheep, cattle, goat and river buffalo chromosomes by in situ hybridization Cytogenet Cell Genet 2001, 94(1-2):82-83. 10.1159/000048788 11701960
    • (2001) Cytogenet Cell Genet , vol.94 , Issue.1-2 , pp. 82-83
    • Antonacci, R.1    Massari, S.2    De Iaco, R.3    Ciccarese, S.4
  • 39
    • 0032804117 scopus 로고    scopus 로고
    • Diversity and evolution of T-cell receptor variable region genes in mammals and birds
    • 10.1007/s002510050606 10630294
    • Su C Jakobsen I Gu X Nei M Diversity and evolution of T-cell receptor variable region genes in mammals and birds Immunogenetics 1999, 50(5-6):301-308. 10.1007/s002510050606 10630294
    • (1999) Immunogenetics , vol.50 , Issue.5-6 , pp. 301-308
    • Su, C.1    Jakobsen, I.2    Gu, X.3    Nei, M.4
  • 40
    • 54149119323 scopus 로고    scopus 로고
    • Use of a Pan-Vbeta primer permits the amplification and sequencing of TCRbeta chains expressed by bovine T-cell clones following a single semi-nested PCR reaction
    • 10.1016/j.vetimm.2008.05.025 18635266
    • Connelley T Burrells A Machugh ND Morrison WI Use of a Pan-Vbeta primer permits the amplification and sequencing of TCRbeta chains expressed by bovine T-cell clones following a single semi-nested PCR reaction Vet Immunol Immunopathol 2008, 126(1-2):156-62. 10.1016/j.vetimm.2008.05.025 18635266
    • (2008) Vet Immunol Immunopathol , vol.126 , Issue.1-2 , pp. 156-162
    • Connelley, T.1    Burrells, A.2    Machugh, N.D.3    Morrison, W.I.4
  • 41
    • 0029559690 scopus 로고
    • Mouse T-cell receptor variable gene segment families
    • 8550093
    • Arden B Clark SP Kabelitz D Mak TW Mouse T-cell receptor variable gene segment families Immunogenetics 1995, 42(6):501-530. 8550093
    • (1995) Immunogenetics , vol.42 , Issue.6 , pp. 501-530
    • Arden, B.1    Clark, S.P.2    Kabelitz, D.3    Mak, T.W.4
  • 42
    • 0029557542 scopus 로고
    • Human T-cell receptor variable gene segment families
    • 8550092
    • Arden B Clark SP Kabelitz D Mak TW Human T-cell receptor variable gene segment families Immunogenetics 1995, 42(6):455-500. 8550092
    • (1995) Immunogenetics , vol.42 , Issue.6 , pp. 455-500
    • Arden, B.1    Clark, S.P.2    Kabelitz, D.3    Mak, T.W.4
  • 43
    • 0037212339 scopus 로고    scopus 로고
    • IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains
    • 10.1016/S0145-305X(02)00039-3 12477501
    • Lefranc MP Pommie C Ruiz M Giudicelli V Foulquier E Truong L Thouvenin-Contet V Lefranc G IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains Dev Comp Immunol 2003, 27(1):55-77. 10.1016/S0145-305X(02)00039-3 12477501
    • (2003) Dev Comp Immunol , vol.27 , Issue.1 , pp. 55-77
    • Lefranc, M.P.1    Pommie, C.2    Ruiz, M.3    Giudicelli, V.4    Foulquier, E.5    Truong, L.6    Thouvenin-Contet, V.7    Lefranc, G.8
  • 44
    • 0037080771 scopus 로고    scopus 로고
    • T-cell receptor sequences that elicit strong down-regulation of premature termination codon-bearing transcripts
    • 125808 11782432 10.1093/emboj/21.1.125
    • Gudikote JP Wilkinson MF T-cell receptor sequences that elicit strong down-regulation of premature termination codon-bearing transcripts EMBO J 2002, 21(1-2):125-134. 125808 11782432 10.1093/emboj/21.1.125
    • (2002) EMBO J , vol.21 , Issue.1-2 , pp. 125-134
    • Gudikote, J.P.1    Wilkinson, M.F.2
  • 45
    • 0032006979 scopus 로고    scopus 로고
    • Nonsense surveillance in lymphocytes?
    • 10.1016/S1074-7613(00)80466-5 9491995
    • Li S Wilkinson MF Nonsense surveillance in lymphocytes? Immunity 1998, 8(2):135-141. 10.1016/S1074-7613(00)80466-5 9491995
    • (1998) Immunity , vol.8 , Issue.2 , pp. 135-141
    • Li, S.1    Wilkinson, M.F.2
  • 46
    • 0033764294 scopus 로고    scopus 로고
    • Thirteen type I loci from HSA4q, HSA6p, HSA7q and HSA12q were comparatively FISH-mapped in four river buffalo and sheep chromosomes
    • 10.1159/000015642 11060457
    • Di Meo GP Perucatti A Schibler L Incarnato D Ferrara L Cribiu EP Iannuzzi L Thirteen type I loci from HSA4q, HSA6p, HSA7q and HSA12q were comparatively FISH-mapped in four river buffalo and sheep chromosomes Cytogenet Cell Genet 2000, 90(1-2):102-105. 10.1159/000015642 11060457
    • (2000) Cytogenet Cell Genet , vol.90 , Issue.1-2 , pp. 102-105
    • Di Meo, G.P.1    Perucatti, A.2    Schibler, L.3    Incarnato, D.4    Ferrara, L.5    Cribiu, E.P.6    Iannuzzi, L.7
  • 47
    • 0034658728 scopus 로고    scopus 로고
    • Functional analysis of the murine TCR beta-chain gene enhancer
    • Carvajal IM Sen R Functional analysis of the murine TCR beta-chain gene enhancer J Immunol 2000 164 12 6332 6339 10843687
    • (2000) J Immunol , vol.164 , pp. 6332-6339
    • Carvajal, I.M.1    Sen, R.2
  • 48
    • 0025036184 scopus 로고
    • Identification and functional characterization of the human T-cell receptor beta gene transcriptional enhancer: Common nuclear proteins interact with the transcriptional regulatory elements of the T-cell receptor alpha and beta genes
    • 361259 2144610
    • Gottschalk LR Leiden JM Identification and functional characterization of the human T-cell receptor beta gene transcriptional enhancer: Common nuclear proteins interact with the transcriptional regulatory elements of the T-cell receptor alpha and beta genes Mol Cell Biol 1990, 10(10):5486-5495. 361259 2144610
    • (1990) Mol Cell Biol , vol.10 , Issue.10 , pp. 5486-5495
    • Gottschalk, L.R.1    Leiden, J.M.2
  • 49
    • 0024997739 scopus 로고
    • Functional analysis of the murine T-cell receptor beta enhancer and characteristics of its DNA-binding proteins
    • 361162 2144608
    • Takeda J Cheng A Mauxion F Nelson CA Newberry RD Sha WC Sen R Loh DY Functional analysis of the murine T-cell receptor beta enhancer and characteristics of its DNA-binding proteins Mol Cell Biol 1990, 10(10):5027-5035. 361162 2144608
    • (1990) Mol Cell Biol , vol.10 , Issue.10 , pp. 5027-5035
    • Takeda, J.1    Cheng, A.2    Mauxion, F.3    Nelson, C.A.4    Newberry, R.D.5    Sha, W.C.6    Sen, R.7    Loh, D.Y.8
  • 50
    • 0028285240 scopus 로고
    • GATA elements are necessary for the activity and tissue specificity of the T-cell receptor beta-chain transcriptional enhancer
    • 358795 8196665
    • Henderson AJ McDougall S Leiden J Calame KL GATA elements are necessary for the activity and tissue specificity of the T-cell receptor beta-chain transcriptional enhancer Mol Cell Biol 1994, 14(6):4286-4294. 358795 8196665
    • (1994) Mol Cell Biol , vol.14 , Issue.6 , pp. 4286-4294
    • Henderson, A.J.1    McDougall, S.2    Leiden, J.3    Calame, K.L.4
  • 51
    • 0033135257 scopus 로고    scopus 로고
    • Promoter element for transcription of unrearranged T-cell receptor beta-chain gene in pro-T cells
    • 10216098
    • Doty RT Xia D Nguyen SP Hathaway TR Willerford DM Promoter element for transcription of unrearranged T-cell receptor beta-chain gene in pro-T cells Blood 1999, 93(9):3017-3025. 10216098
    • (1999) Blood , vol.93 , Issue.9 , pp. 3017-3025
    • Doty, R.T.1    Xia, D.2    Nguyen, S.P.3    Hathaway, T.R.4    Willerford, D.M.5
  • 52
    • 0032145405 scopus 로고    scopus 로고
    • A developmental stage-specific promoter directs germline transcription of D beta J beta gene segments in precursor T lymphocytes
    • 9686603
    • Sikes ML Gomez RJ Song J Oltz EM A developmental stage-specific promoter directs germline transcription of D beta J beta gene segments in precursor T lymphocytes J Immunol 1998, 161(3):1399-1405. 9686603
    • (1998) J Immunol , vol.161 , Issue.3 , pp. 1399-1405
    • Sikes, M.L.1    Gomez, R.J.2    Song, J.3    Oltz, E.M.4
  • 53
    • 45549101973 scopus 로고    scopus 로고
    • Regulation of Tcrb recombination ordering by c-Fos-dependent RAG deposition
    • 10.1038/ni.1614 18500346
    • Wang X Xiao G Zhang Y Wen X Gao X Okada S Liu X Regulation of Tcrb recombination ordering by c-Fos-dependent RAG deposition Nat Immunol 2008, 9(7):794-801. 10.1038/ni.1614 18500346
    • (2008) Nat Immunol , vol.9 , Issue.7 , pp. 794-801
    • Wang, X.1    Xiao, G.2    Zhang, Y.3    Wen, X.4    Gao, X.5    Okada, S.6    Liu, X.7
  • 54
    • 1842311229 scopus 로고
    • A conserved sequence in the T-cell receptor beta-chain promoter region
    • 280251 3259318 10.1073/pnas.85.10.3551
    • Anderson SJ Chou HS Loh DY A conserved sequence in the T-cell receptor beta-chain promoter region Proc Natl Acad Sci USA 1988, 85(10):3551-3554. 280251 3259318 10.1073/pnas.85.10.3551
    • (1988) Proc Natl Acad Sci USA , vol.85 , Issue.10 , pp. 3551-3554
    • Anderson, S.J.1    Chou, H.S.2    Loh, D.Y.3
  • 55
    • 0031569175 scopus 로고    scopus 로고
    • Identification of a novel, spliced variant of CREB that is preferentially expressed in the thymus
    • 9058782
    • Yang L Lanier ER Kraig E Identification of a novel, spliced variant of CREB that is preferentially expressed in the thymus J Immunol 1997, 158(6):2522-2525. 9058782
    • (1997) J Immunol , vol.158 , Issue.6 , pp. 2522-2525
    • Yang, L.1    Lanier, E.R.2    Kraig, E.3
  • 56
    • 0031202203 scopus 로고    scopus 로고
    • Evolution and selection of primate T cell antigen receptor BV8 gene subfamily
    • 10.1006/mpev.1997.0406 9242595
    • Funkhouser W Koop BF Charmley P Martindale D Slightom J Hood L Evolution and selection of primate T cell antigen receptor BV8 gene subfamily Mol Phylogenet Evol 1997, 8(1):51-64. 10.1006/mpev.1997.0406 9242595
    • (1997) Mol Phylogenet Evol , vol.8 , Issue.1 , pp. 51-64
    • Funkhouser, W.1    Koop, B.F.2    Charmley, P.3    Martindale, D.4    Slightom, J.5    Hood, L.6
  • 57
    • 0030791307 scopus 로고    scopus 로고
    • Evolution by the birth-and-death process in multigene families of the vertebrate immune system
    • 33709 9223266 10.1073/pnas.94.15.7799
    • Nei M Gu X Sitnikova T Evolution by the birth-and-death process in multigene families of the vertebrate immune system Proc Natl Acad Sci USA 1997, 94(15):7799-7806. 33709 9223266 10.1073/pnas.94.15.7799
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.15 , pp. 7799-7806
    • Nei, M.1    Gu, X.2    Sitnikova, T.3
  • 58
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • 1464479 16285855 10.1146/annurev.genet.39.073003.112240
    • Nei M Rooney AP Concerted and birth-and-death evolution of multigene families Annu Rev Genet 2005, 39:121-152. 1464479 16285855 10.1146/ annurev.genet.39.073003.112240
    • (2005) Annu Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 59
    • 0029558857 scopus 로고
    • Comparison of human and mouse T-cell receptor variable gene segment subfamilies
    • 10.1007/BF00172178 8550094
    • Clark SP Arden B Kabelitz D Mak TW Comparison of human and mouse T-cell receptor variable gene segment subfamilies Immunogenetics 1995, 42(6):531-540. 10.1007/BF00172178 8550094
    • (1995) Immunogenetics , vol.42 , Issue.6 , pp. 531-540
    • Clark, S.P.1    Arden, B.2    Kabelitz, D.3    Mak, T.W.4
  • 60
    • 0037409495 scopus 로고    scopus 로고
    • The mouse (Mus musculus) T cell receptor alpha (TRA) and delta (TRD) variable genes
    • 10.1016/S0145-305X(03)00027-2 12697305
    • Bosc N Lefranc MP The mouse (Mus musculus) T cell receptor alpha (TRA) and delta (TRD) variable genes Dev Comp Immunol 2003, 27(6-7):465-497. 10.1016/S0145-305X(03)00027-2 12697305
    • (2003) Dev Comp Immunol , vol.27 , Issue.6-7 , pp. 465-497
    • Bosc, N.1    Lefranc, M.P.2
  • 61
    • 0031843744 scopus 로고    scopus 로고
    • Coevolution of immunoglobulin heavy- and light-chain variable-region gene families
    • 9615443
    • Sitnikova T Su C Coevolution of immunoglobulin heavy- and light-chain variable-region gene families Mol Biol Evol 1998, 15(6):617-625. 9615443
    • (1998) Mol Biol Evol , vol.15 , Issue.6 , pp. 617-625
    • Sitnikova, T.1    Su, C.2
  • 62
    • 0029943278 scopus 로고    scopus 로고
    • Mitochondrial diversity and the origins of African and European cattle
    • 39419 8643540 10.1073/pnas.93.10.5131
    • Bradley DG MacHugh DE Cunningham P Loftus RT Mitochondrial diversity and the origins of African and European cattle Proc Natl Acad Sci USA 1996, 93(10):5131-5135. 39419 8643540 10.1073/pnas.93.10.5131
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.10 , pp. 5131-5135
    • Bradley, D.G.1    MacHugh, D.E.2    Cunningham, P.3    Loftus, R.T.4
  • 63
    • 43449124747 scopus 로고    scopus 로고
    • Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intra-species variation, taxonomy and domestication
    • 10.1159/000118756 18467841
    • Hiendleder S Lewalski H Janke A Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intra-species variation, taxonomy and domestication Cytogenet Genome Res 2008, 120(1-2):150-156. 10.1159/000118756 18467841
    • (2008) Cytogenet Genome Res , vol.120 , Issue.1-2 , pp. 150-156
    • Hiendleder, S.1    Lewalski, H.2    Janke, A.3
  • 64
    • 0030822807 scopus 로고    scopus 로고
    • Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus)
    • 1208036 9215909
    • MacHugh DE Shriver MD Loftus RT Cunningham P Bradley DG Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus) Genetics 1997, 146(3):1071-1086. 1208036 9215909
    • (1997) Genetics , vol.146 , Issue.3 , pp. 1071-1086
    • MacHugh, D.E.1    Shriver, M.D.2    Loftus, R.T.3    Cunningham, P.4    Bradley, D.G.5
  • 65
    • 0010647820 scopus 로고
    • Murine T-cell receptor mutants with deletions of beta-chain variable region genes
    • 322946 3456168 10.1073/pnas.83.3.767
    • Behlke MA Chou HS Huppi K Loh DY Murine T-cell receptor mutants with deletions of beta-chain variable region genes Proc Natl Acad Sci USA 1986, 83(3):767-771. 322946 3456168 10.1073/pnas.83.3.767
    • (1986) Proc Natl Acad Sci USA , vol.83 , Issue.3 , pp. 767-771
    • Behlke, M.A.1    Chou, H.S.2    Huppi, K.3    Loh, D.Y.4
  • 66
    • 0024427004 scopus 로고
    • Different large deletions of T cell receptor V beta genes in natural populations of mice
    • 10.1002/eji.1830191024 2573531
    • Jouvin-Marche E Trede NS Bandeira A Tomas A Loh DY Cazenave PA Different large deletions of T cell receptor V beta genes in natural populations of mice Eur J Immunol 1989, 19(10):1921-1926. 10.1002/eji.1830191024 2573531
    • (1989) Eur J Immunol , vol.19 , Issue.10 , pp. 1921-1926
    • Jouvin-Marche, E.1    Trede, N.S.2    Bandeira, A.3    Tomas, A.4    Loh, D.Y.5    Cazenave, P.A.6
  • 67
    • 0022602640 scopus 로고
    • Delineation of a defect in T cell receptor beta genes of NZW mice predisposed to autoimmunity
    • 2188050 3005467 10.1084/jem.163.3.644
    • Noonan DJ Kofler R Singer PA Cardenas G Dixon FJ Theofilopoulos AN Delineation of a defect in T cell receptor beta genes of NZW mice predisposed to autoimmunity J Exp Med 1986, 163(3):644-653. 2188050 3005467 10.1084/jem.163.3.644
    • (1986) J Exp Med , vol.163 , Issue.3 , pp. 644-653
    • Noonan, D.J.1    Kofler, R.2    Singer, P.A.3    Cardenas, G.4    Dixon, F.J.5    Theofilopoulos, A.N.6
  • 68
    • 0024444458 scopus 로고
    • Insertion/deletion-related polymorphisms in the human T cell receptor beta gene complex
    • 2189474 2571667 10.1084/jem.170.4.1263
    • Seboun E Robinson MA Kindt TJ Hauser SL Insertion/deletion-related polymorphisms in the human T cell receptor beta gene complex J Exp Med 1989, 170(4):1263-1270. 2189474 2571667 10.1084/jem.170.4.1263
    • (1989) J Exp Med , vol.170 , Issue.4 , pp. 1263-1270
    • Seboun, E.1    Robinson, M.A.2    Kindt, T.J.3    Hauser, S.L.4
  • 69
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: A public knowledge-base of divergence times among organisms
    • 10.1093/bioinformatics/btl505 17021158
    • Hedges SB Dudley J Kumar S TimeTree: A public knowledge-base of divergence times among organisms Bioinformatics 2006, 22(23):2971-2972. 10.1093/bioinformatics/btl505 17021158
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 71
    • 0035101370 scopus 로고    scopus 로고
    • Complexity of the T cell receptor Cbeta isotypes in the Mexican axolotl: Structure and diversity of the VDJCbeta3 and VDJCbeta4 chains
    • 10.1002/1521-4141(200102)31:2<403::AID-IMMU403>3.0.CO;2-4 11180104
    • Fellah JS Durand C Kerfourn F Charlemagne J Complexity of the T cell receptor Cbeta isotypes in the Mexican axolotl: Structure and diversity of the VDJCbeta3 and VDJCbeta4 chains Eur J Immunol 2001, 31(2):403-411. 10.1002/1521-4141(200102)31:2<403::AID-IMMU403>3.0.CO;2-4 11180104
    • (2001) Eur J Immunol , vol.31 , Issue.2 , pp. 403-411
    • Fellah, J.S.1    Durand, C.2    Kerfourn, F.3    Charlemagne, J.4
  • 72
    • 0037443416 scopus 로고    scopus 로고
    • The four TCR genes of teleost fish: The cDNA and genomic DNA analysis of Japanese flounder (Paralichthys olivaceus) TCR alpha-, beta-, gamma-, and delta-chains
    • 12626564
    • Nam BH Hirono I Aoki T The four TCR genes of teleost fish: The cDNA and genomic DNA analysis of Japanese flounder (Paralichthys olivaceus) TCR alpha-, beta-, gamma-, and delta-chains J Immunol 2003, 170(6):3081-3090. 12626564
    • (2003) J Immunol , vol.170 , Issue.6 , pp. 3081-3090
    • Nam, B.H.1    Hirono, I.2    Aoki, T.3
  • 73
    • 14944375379 scopus 로고    scopus 로고
    • Genomic organization of the chicken T-cell receptor beta chain D-J-C region
    • 10.1292/jvms.66.1509 15644600
    • Shigeta A Sato M Kawashima T Horiuchi H Matsuda H Furusawa S Genomic organization of the chicken T-cell receptor beta chain D-J-C region J Vet Med Sci 2004, 66(12):1509-1515. 10.1292/jvms.66.1509 15644600
    • (2004) J Vet Med Sci , vol.66 , Issue.12 , pp. 1509-1515
    • Shigeta, A.1    Sato, M.2    Kawashima, T.3    Horiuchi, H.4    Matsuda, H.5    Furusawa, S.6
  • 74
    • 0037371146 scopus 로고    scopus 로고
    • The T cell receptor beta locus of the channel catfish, Ictalurus punctatus, reveals unique features
    • 12594284
    • Zhou H Bengten E Miller NW Clem LW Wilson M The T cell receptor beta locus of the channel catfish, Ictalurus punctatus, reveals unique features J Immunol 2003, 170(5):2573-2581. 12594284
    • (2003) J Immunol , vol.170 , Issue.5 , pp. 2573-2581
    • Zhou, H.1    Bengten, E.2    Miller, N.W.3    Clem, L.W.4    Wilson, M.5
  • 75
    • 41349122883 scopus 로고    scopus 로고
    • Comparative genomic analysis and evolution of the T cell receptor loci in the opossum Monodelphis domestica
    • 2275272 18312668 10.1186/1471-2164-9-111
    • Parra ZE Baker ML Hathaway J Lopez AM Trujillo J Sharp A Miller RD Comparative genomic analysis and evolution of the T cell receptor loci in the opossum Monodelphis domestica BMC Genomics 2008, 9:111. 2275272 18312668 10.1186/1471-2164-9-111
    • (2008) BMC Genomics , vol.9 , pp. 111
    • Parra, Z.E.1    Baker, M.L.2    Hathaway, J.3    Lopez, A.M.4    Trujillo, J.5    Sharp, A.6    Miller, R.D.7
  • 76
    • 0026094466 scopus 로고
    • Organization and nucleotide sequence of the rat T cell receptor beta-chain complex
    • 1828265
    • Williams CB Blankenhorn EP Byrd KE Levinson G Gutman GA Organization and nucleotide sequence of the rat T cell receptor beta-chain complex J Immunol 1991, 146(12):4406-4413. 1828265
    • (1991) J Immunol , vol.146 , Issue.12 , pp. 4406-4413
    • Williams, C.B.1    Blankenhorn, E.P.2    Byrd, K.E.3    Levinson, G.4    Gutman, G.A.5
  • 77
    • 0023105659 scopus 로고
    • Genomic DNA encoding rabbit T cell receptor beta-chains: Isotypes and allotypes of C beta
    • 2879869
    • Komatsu M Lamoyi E Mage RG Genomic DNA encoding rabbit T cell receptor beta-chains: Isotypes and allotypes of C beta J Immunol 1987, 138(5):1621-1626. 2879869
    • (1987) J Immunol , vol.138 , Issue.5 , pp. 1621-1626
    • Komatsu, M.1    Lamoyi, E.2    Mage, R.G.3
  • 78
    • 0021997452 scopus 로고
    • A large deletion within the T-cell receptor beta-chain gene complex in New Zealand white mice
    • 10.1126/science.2990044 2990044
    • Kotzin BL Barr VL Palmer E A large deletion within the T-cell receptor beta-chain gene complex in New Zealand white mice Science 1985, 229(4709):167-171. 10.1126/science.2990044 2990044
    • (1985) Science , vol.229 , Issue.4709 , pp. 167-171
    • Kotzin, B.L.1    Barr, V.L.2    Palmer, E.3
  • 79
    • 0025887316 scopus 로고
    • Chicken T-cell receptor beta-chain diversity: An evolutionarily conserved D beta-encoded glycine turn within the hypervariable CDR3 domain
    • 52369 1652759 10.1073/pnas.88.17.7699
    • McCormack WT Tjoelker LW Stella G Postema CE Thompson CB Chicken T-cell receptor beta-chain diversity: An evolutionarily conserved D beta-encoded glycine turn within the hypervariable CDR3 domain Proc Natl Acad Sci USA 1991, 88(17):7699-7703. 52369 1652759 10.1073/ pnas.88.17.7699
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.17 , pp. 7699-7703
    • McCormack, W.T.1    Tjoelker, L.W.2    Stella, G.3    Postema, C.E.4    Thompson, C.B.5
  • 80
    • 0026536601 scopus 로고
    • Exon-specific gene correction (conversion) during short evolutionary periods: Homogenization in a two-gene family encoding the beta-chain constant region of the T-lymphocyte antigen receptor
    • 1532437
    • Rudikoff S Fitch WM Heller M Exon-specific gene correction (conversion) during short evolutionary periods: Homogenization in a two-gene family encoding the beta-chain constant region of the T-lymphocyte antigen receptor Mol Biol Evol 1992, 9(1):14-26. 1532437
    • (1992) Mol Biol Evol , vol.9 , Issue.1 , pp. 14-26
    • Rudikoff, S.1    Fitch, W.M.2    Heller, M.3
  • 81
    • 0030776069 scopus 로고    scopus 로고
    • Genomic organization of the TcR beta-chain diversity (Dbeta) and joining (Jbeta) segments in the rainbow trout: Presence of many repeated sequences
    • 10.1016/S0161-5890(97)00061-8 9393968
    • De Guerra A Charlemagne J Genomic organization of the TcR beta-chain diversity (Dbeta) and joining (Jbeta) segments in the rainbow trout: presence of many repeated sequences Mol Immunol 1997, 34(8-9):653-662. 10.1016/S0161-5890(97)00061-8 9393968
    • (1997) Mol Immunol , vol.34 , Issue.8-9 , pp. 653-662
    • De Guerra, A.1    Charlemagne, J.2
  • 82
    • 0037804772 scopus 로고    scopus 로고
    • Regulation of T-cell receptor D beta 1 promoter by KLF5 through reiterated GC-rich motifs
    • 10.1182/blood-2002-08-2579 12576331
    • Yang XO Doty RT Hicks JS Willerford DM Regulation of T-cell receptor D beta 1 promoter by KLF5 through reiterated GC-rich motifs Blood 2003, 101(11):4492-4499. 10.1182/blood-2002-08-2579 12576331
    • (2003) Blood , vol.101 , Issue.11 , pp. 4492-4499
    • Yang, X.O.1    Doty, R.T.2    Hicks, J.S.3    Willerford, D.M.4
  • 83
    • 0030842463 scopus 로고    scopus 로고
    • A conserved tissue-specific structure at a human T-cell receptor beta-chain core promoter
    • 232275 9234679
    • Halle JP Haus-Seuffert P Woltering C Stelzer G Meisterernst M A conserved tissue-specific structure at a human T-cell receptor beta-chain core promoter Mol Cell Biol 1997, 17(8):4220-4229. 232275 9234679
    • (1997) Mol Cell Biol , vol.17 , Issue.8 , pp. 4220-4229
    • Halle, J.P.1    Haus-Seuffert, P.2    Woltering, C.3    Stelzer, G.4    Meisterernst, M.5
  • 84
    • 0023847734 scopus 로고
    • Conserved organization of the human and murine T-cell receptor beta-gene families
    • 10.1038/331543a0 2829029
    • Lai E Concannon P Hood L Conserved organization of the human and murine T-cell receptor beta-gene families Nature 1988, 331(6156):543-546. 10.1038/331543a0 2829029
    • (1988) Nature , vol.331 , Issue.6156 , pp. 543-546
    • Lai, E.1    Concannon, P.2    Hood, L.3
  • 85
    • 20144369780 scopus 로고    scopus 로고
    • Artiodactyl emergence is accompanied by the birth of an extensive pool of diverse germline TRDV1 genes
    • 10.1007/s00251-005-0773-7 15900497
    • Antonacci R Lanave C Del Faro L Vaccarelli G Ciccarese S Massari S Artiodactyl emergence is accompanied by the birth of an extensive pool of diverse germline TRDV1 genes Immunogenetics 2005, 57(3-4):254-266. 10.1007/s00251-005-0773-7 15900497
    • (2005) Immunogenetics , vol.57 , Issue.3-4 , pp. 254-266
    • Antonacci, R.1    Lanave, C.2    Del Faro, L.3    Vaccarelli, G.4    Ciccarese, S.5    Massari, S.6
  • 86
    • 0041670912 scopus 로고    scopus 로고
    • Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
    • 10.1007/s00239-002-2451-9 12962306
    • Miccoli MC Antonacci R Vaccarelli G Lanave C Massari S Cribiu EP Ciccarese S Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus J Mol Evol 2003, 57(1):52-62. 10.1007/s00239-002-2451-9 12962306
    • (2003) J Mol Evol , vol.57 , Issue.1 , pp. 52-62
    • Miccoli, M.C.1    Antonacci, R.2    Vaccarelli, G.3    Lanave, C.4    Massari, S.5    Cribiu, E.P.6    Ciccarese, S.7
  • 87
    • 77951621301 scopus 로고    scopus 로고
    • The genome sequence of taurine cattle: A window to ruminant biology and evolution
    • 10.1126/science.1169588 19390049
    • The Bovine Genome Sequencing and Analysis Consortium Elsik CG Tellam RL Worley KC The genome sequence of taurine cattle: A window to ruminant biology and evolution Science 2009, 324:522-528. 10.1126/science.1169588 19390049
    • (2009) Science , vol.324 , pp. 522-528
    • Elsik, C.G.1    Tellam, R.L.2    Worley, K.C.3
  • 88
    • 66249088439 scopus 로고    scopus 로고
    • Immunodominance, clonal composition and TCR'beta' repertoire of the bovine CD8+ T-cell response to Theileria parva
    • Edinburgh: University of Edinburgh
    • Connelley T Immunodominance, clonal composition and TCR'beta' repertoire of the bovine CD8+ T-cell response to Theileria parva Edinburgh: University of Edinburgh 2007
    • (2007)
    • Connelley, T.1
  • 89
    • 66249137543 scopus 로고    scopus 로고
    • http://www.ensembl.org
  • 90
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517 7984417 10.1093/nar/22.22.4673
    • Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22(22):4673-4680. 308517 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 91
    • 48449094247 scopus 로고    scopus 로고
    • IMGT/V-QUEST: The highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis
    • 2447746 18503082 10.1093/nar/gkn316
    • Brochet X Lefranc MP Giudicelli V IMGT/V-QUEST: The highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis Nucleic Acids Res 2008, 36: Web Server W503-508. 2447746 18503082 10.1093/nar/gkn316
    • (2008) Nucleic Acids Res
    • Brochet, X.1    Lefranc, M.P.2    Giudicelli, V.3
  • 93
    • 66249143531 scopus 로고    scopus 로고
    • http://imgt.cines.fr/
  • 94
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • 10.1016/0378-1119(95)00714-8 8566757
    • Sonnhammer EL Durbin R A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene 1995, 167(1-2):GC1-10. 10.1016/0378-1119(95)00714-8 8566757
    • (1995) Gene , vol.167 , Issue.1-2
    • Sonnhammer, E.L.1    Durbin, R.2
  • 95
    • 66249114115 scopus 로고    scopus 로고
    • http://emboss.bioinformatics.nl
  • 96
    • 0004239562 scopus 로고    scopus 로고
    • RepeatMasker http://www.repeatmasker.org
    • RepeatMasker
  • 97
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • 419797 15173120 10.1101/gr.849004
    • Crooks GE Hon G Chandonia JM Brenner SE WebLogo: A sequence logo generator Genome Res 2004, 14(6):1188-1190. 419797 15173120 10.1101/ gr.849004
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 99
    • 0024691453 scopus 로고
    • V(D)J recombination: A functional definition of the joining signals
    • 10.1101/gad.3.7.1053 2777075
    • Hesse JE Lieber MR Mizuuchi K Gellert M V(D)J recombination: A functional definition of the joining signals Genes Dev 1989, 3(7):1053-1061. 10.1101/gad.3.7.1053 2777075
    • (1989) Genes Dev , vol.3 , Issue.7 , pp. 1053-1061
    • Hesse, J.E.1    Lieber, M.R.2    Mizuuchi, K.3    Gellert, M.4
  • 100
    • 43649086183 scopus 로고    scopus 로고
    • Nomenclature of the human T cell receptor genes
    • Appendix 1 Appendix 10
    • Lefranc MP Nomenclature of the human T cell receptor genes Curr Protoc Immunol 2001. Appendix 1 Appendix 10
    • (2001) Curr Protoc Immunol
    • Lefranc, M.P.1
  • 101
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 3447015
    • Saitou N Nei M The neighbor-joining method: A new method for reconstructing phylogenetic trees Mol Biol Evol 1987, 4(4):406-425. 3447015
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 102
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092 17488738
    • Tamura K Dudley J Nei M Kumar S MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092 17488738
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 103
    • 66249119785 scopus 로고    scopus 로고
    • http://www.megasoftware.net
  • 105
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520 14530136
    • Guindon S Gascuel O A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst Biol 2003, 52(5):696-704. 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 106
    • 66249089142 scopus 로고    scopus 로고
    • PHYML http://atgc.lirmm.fr/phyml
    • PHYML
  • 107
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • 10.1080/10635150600755453 16785212
    • Anisimova M Gascuel O Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative Syst Biol 2006, 55(4):539-552. 10.1080/10635150600755453 16785212
    • (2006) Syst Biol , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.