IMGT, the international ImMunoGeneTics information system®

Nucleic Acids Research

Volumn 33, Issue DATABASE ISS., 2005, Pages

  Lefranc, Marie Paule ^a,b   Giudicelli, Véronique ^a   Kaas, Quentin ^a   Duprat, Elodie ^a   Jabado Michaloud, Joumana ^a   Scaviner, Dominique ^a   Ginestoux, Chantal ^a   Clément, Oliver ^a   Chaume, Denys ^a   Lefranc, Gérard ^a  

^a UMR 9002 CNRS UM   (France)

^b INSTITUT UNIVERSITAIRE DE FRANCE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; IMMUNOGLOBULIN; T LYMPHOCYTE RECEPTOR; MAJOR HISTOCOMPATIBILITY ANTIGEN;

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ANTIBODY ENGINEERING; ARTICLE; AUTOIMMUNE DISEASE; BIOTECHNOLOGY; CHIMERA; DIAGNOSTIC PROCEDURE; FRANCE; GENETIC ANALYSIS; GENETIC DATABASE; HUMAN; IMMUNOGENETICS INFORMATION SYSTEM; IMMUNOTHERAPY; INFECTION; INFORMATION SYSTEM; INTERNET; LEUKEMIA; LYMPHOMA; MAJOR HISTOCOMPATIBILITY COMPLEX; MEDICAL RESEARCH; MOLECULAR CLONING; MOLECULAR GENETICS; MYELOMA; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; SEQUENCE DATABASE; TRANSPLANTATION; VACCINATION; VETERINARY MEDICINE; BIOINFORMATICS; CLINICAL RESEARCH; COMPUTER LANGUAGE; COMPUTER PROGRAM; INTERNATIONAL IMMUNOGENETICS INFORMATION SYSTEM; KNOWLEDGE BASE; SEQUENCE ANALYSIS;

ANIMALS; DATABASE MANAGEMENT SYSTEMS; DATABASES, GENETIC; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; GENES, IMMUNOGLOBULIN; GENES, T-CELL RECEPTOR; GENOMICS; HUMANS; IMMUNOGENETICS; INTERNATIONALITY; MAJOR HISTOCOMPATIBILITY COMPLEX; PROTEIN CONFORMATION; SYSTEMS INTEGRATION; VERTEBRATES;

VERTEBRATA;

EID: 13444312023     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki065     Document Type: Article

References (24)

1. Lefranc,M.P. (2003) IMGT, the international ImMunoGeneTics database®. Nucleic Acids Res., 31, 307-310.
2. Lefranc,M.P. (2003) IMGT® databases, web resources and tools for immunoglobulin and T cell receptor sequence analysis, http://imgt.cines.fr. Leukemia, 17, 260-266.
3. Lefranc,M.-P., Giudicelli,V., Ginestoux,C., Bosc,N., Folch,G., Guiraudou,D., Jabado-Michaloud,J., Magris,S., Scaviner,D., Thouvenin,V., Combres,K., Girod,D., Jeanjean,S., Protat,C., Yousfi Monod,M., Duprat,E., Kaas,Q., Pommié,C., Chaume,D. and Lefranc,G. (2004) IMGT-ONTOLOGY for Immunogenetics and Immunoinformatics. In Silico Biol., 4, 17-29.
4. Lefranc,M.-P. (2004) IMGT-ONTOLOGY and IMGT databases, tools and web resources for immunogenetics and immunoinformatics. Mol. Immunol., 40, 647-659.
5. Giudicelli,V. and Lefranc,M.-P. (1999) Ontology for Immunogenetics: the IMGT-ONTOLOGY. Bioinformatics, 12, 1047-1054.
6. Giudicelli,V., Chaume,D. and Lefranc,M.-P. (2005) IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res., 33, D256-D261.
7. Lefranc,M.-P. and Lefranc,G. (2001) The Immunoglobulin FactsBook. Academic Press, London, UK, 458 pages.
8. Lefranc,M.-P. and Lefranc,G. (2001) The T cell receptor FactsBook. Academic Press, London, UK, 398 pages.
9. Wain,H.M., Bruford,E.A., Lovering,R.C., Lush,M.J., Wright,M.W. and Povey,S. (2002) Guidelines for human gene nomenclature. Genomics, 79, 464-470.
10. Baum,T.P., Pasqual,N., Thuderoz,F., Hierle,V., Chaume,D., Lefranc,M.-P., Jouvin-Marche,E., Marche,P.,N. and Demongeot,J. (2004) IMGT/GeneInfo: enhancing V(D)J recombination database accessibility. Nucleic Acids Res., 32, D51-D54.
11. Chaume,D., Giudicelli,V. and Lefranc,M.-P. (2004) IMGT/LIGM-DB. In Galperin, M.Y. (ed.), The Molecular Biology Database Collection: 2004 update, Database listing. Nucleic Acids Res., 32, D3-D22.
12. Kulikova,T., Aldebert,P., Althorpe,N., Baker,W., Bates,K., Browne,P., van den Broek,A., Cochrane,G., Duggan,K., Eberhardt,R., Faruque,N., Garcia-Pastor,M., Harte,N., Kanz,C., Leinonen,R., Lin,Q., Lombard,V., Lopez,R., Mancuso,R., McHale,M., Nardone,F., Silventoinen,V., Stoehr,P., Stoesser,G., Tuli,M.A., Tzouvara,K., Vaughan,R., Wu,D., Zhu,W. and Apweiler,R. (2004) The EMBL Nucleotide Sequence Database. Nucleic Acids Res., 32, D27-D30.
13. Folch,G., Bertrand,J., Lemaitre,M. and Lefranc,M.-P. (2004) IMGT/PRIMER-DB. In: Galperin M.Y. (ed.), The Molecular Biology Database Collection: 2004 update. Database listing. Nucleic Acids Res., 32, D3-D22.
14. Robinson,J., Waller,M.J., Parham,P., de Groot,N., Bontrop,R., Kennedy,L.J., Stoehr,P. and Marsh,S.G. (2003) IMGT/HLA and IMGT/MHC sequence databases for the study of the major histocompatibility complex. Nucleic Acids Res., 31, 311-314.
15. Giudicelli,V., Chaume,D. and Lefranc,M.-P. (2004) IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis. Nucleic Acids Res. 32, W435-W440.
16. YousfiMonod,M., Giudicelli,V., Chaume,D. and Lefranc,M.-P. (2004) IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONS. Bioinformatics, 20, I379-I385.
17. Elemento,O. and Lefranc,M.-P. (2003) IMGT/PhyloGene: an on-line tool for comparative analysis of immunoglobulin and T cell receptor genes. Dev. Comp. Immunol., 27, 763-779.
18. Kaas,Q., Ruiz,M. and Lefranc,M.-P. (2004) IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data. Nucleic Acids Res., 32 D208-D210.
19. Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
20. Lefranc,M.-P., Pommié,C., Ruiz,M., Giudicelli,V., Foulquier,E., Truong,L., Thouvenin-Contet,V. and Lefranc,G. (2003) IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev. Comp. Immunol., 27, 55-77.
21. Lefranc,M.-P., Pommié,C., Kaas,Q., Duprat,E., Bosc,N., Guiraudou,D., Jean,C., Ruiz,M., Da Piedade,I., Rouard,M., Foulquier,E., Thouvenin,V. and Lefranc,G. (2005) IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains. Dev. Comp. Immunol., 29, 185-203.
22. Ruiz,M. and Lefranc,M.-P. (2002) IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures. Immunogenetics, 53, 857-883.
23. Pommié,C., Sabatier,S., Lefranc,G. and Lefranc,M.-P. (2004) IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties. J. Mol. Recognit., 17, 17-32.
24. Lefranc,M.-P., Clement,O., Kaas,Q., Duprat,E., Chastellan,P., Coelho,I., Combres,K., Ginestoux,C., Giudicelli,V., Chaume,D. and Lefranc,G. (2004) IMGT-Choreography for Immunogenetics and Immunoinformatics. In Silico Biol. (in press).