-
1
-
-
0000082702
-
Biochemical systematics
-
Alston, R. E. 1967. Biochemical systematics. Evol. Biol. 1: 197-385.
-
(1967)
Evol. Biol
, vol.1
, pp. 197-385
-
-
Alston, R.E.1
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
Ané, C., Larget, B., Baum, D. A., Smith, S. D., and Rokas, A. 2007. Bayesian estimation of concordance among gene trees. Mol. Biol. Evol. 24: 412-426.
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 412-426
-
-
Ané, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
4
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
5
-
-
2342651581
-
Bayesian gene/species tree reconciliation and orthology analysis using MCMC
-
Arvestad, L., Berglund, A.-C., Lagergren, J., and Sennblad, B. 2003. Bayesian gene/species tree reconciliation and orthology analysis using MCMC. Bioin-formatics 19: 17-115.
-
(2003)
Bioin-formatics
, vol.19
, pp. 17-115
-
-
Arvestad, L.1
Berglund, A.-C.2
Lagergren, J.3
Sennblad, B.4
-
6
-
-
2442562450
-
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution
-
Arvestad, L., Berglund, A.-C., Lagergren, J., and Sennblad, B. 2004. Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB 2004 326-335.
-
(2004)
RECOMB 2004
, pp. 326-335
-
-
Arvestad, L.1
Berglund, A.-C.2
Lagergren, J.3
Sennblad, B.4
-
7
-
-
4344634588
-
-
Second Edition. Sinauer, Sunderland, MA
-
Avise, J. C. 2004. Molecular Markers, Natural History, and Evolution, Second Edition. Sinauer, Sunderland, MA.
-
(2004)
Molecular Markers, Natural History, and Evolution
-
-
Avise, J.C.1
-
8
-
-
33751114437
-
Computational grand challenges in assembling the tree of life
-
Tzeng, C.-W, Ed, Elsevier, New York
-
Bader, D. A., Roshan, U., and Stamatakis, A. 2006. Computational grand challenges in assembling the tree of life. In: Advances in Computers, Vol. 68. pp. 128-170. Tzeng, C.-W., Ed., Elsevier, New York.
-
(2006)
Advances in Computers
, vol.68
, pp. 128-170
-
-
Bader, D.A.1
Roshan, U.2
Stamatakis, A.3
-
9
-
-
34547428923
-
Heuristics for the gene-duplication problem: An W(N) speed-up for the local heuristic
-
RECOMB 2007
-
Bansal, M., Burleigh, J. G., Eulenstein, O., and Wehe, A. 2007. Heuristics for the gene-duplication problem: an W(N) speed-up for the local heuristic. RECOMB 2007, LNCS 4453: 238-252.
-
(2007)
LNCS
, vol.4453
, pp. 238-252
-
-
Bansal, M.1
Burleigh, J.G.2
Eulenstein, O.3
Wehe, A.4
-
10
-
-
49949102302
-
The gene-duplication problem: Near-linear time algorithms for NNI based local searches
-
ISBRA 2008
-
Bansal, M. S., and Eulenstein, O. 2008. The gene-duplication problem: near-linear time algorithms for NNI based local searches. ISBRA 2008, LNCS 4983: 14-25.
-
(2008)
LNCS
, vol.4983
, pp. 14-25
-
-
Bansal, M.S.1
Eulenstein, O.2
-
11
-
-
37249081512
-
2/log n)speed-up of TBR heuristics for the gene-duplication problem
-
4645
-
2/log n)speed-up of TBR heuristics for the gene-duplication problem. WABI 2007, LNCS 4645: 124-135.
-
(2007)
LNCS
, vol.WABI 2007
, pp. 124-135
-
-
Bansal, M.S.1
Eulenstein, O.2
-
12
-
-
0032766676
-
Interspecific hybrid ancestry of a plant adaptive radiation: Allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications
-
Barrier, M., Baldwin, B. G., Robichaux, R. H., and Purugganan, M. D. 1999. Interspecific hybrid ancestry of a plant adaptive radiation: Allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications. Mol. Biol. Evol. 16: 1105-1113.
-
(1999)
Mol. Biol. Evol
, vol.16
, pp. 1105-1113
-
-
Barrier, M.1
Baldwin, B.G.2
Robichaux, R.H.3
Purugganan, M.D.4
-
13
-
-
0002844544
-
Combining trees as a way of combining data sets for phy-logenetic inference, and the desirability of combining gene trees
-
Baum, B. R. 1992. Combining trees as a way of combining data sets for phy-logenetic inference, and the desirability of combining gene trees. Taxon. 41: 3-10.
-
(1992)
Taxon
, vol.41
, pp. 3-10
-
-
Baum, B.R.1
-
14
-
-
33845908745
-
Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors?
-
Baurain, D., Brinkmann, H., and Philippe, H.. 2007. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? Mol. Biol. Evol. 24: 6-9.
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 6-9
-
-
Baurain, D.1
Brinkmann, H.2
Philippe, H.3
-
15
-
-
33845609219
-
Correlated evolution of genome size and seed mass
-
Beaulieu, J. M., Moles, A. T., Leitch, I. J., Bennett, M. D., Dickie, J. B., and Knight, C. A. 2007. Correlated evolution of genome size and seed mass. New Phytologist 173: 422-437.
-
(2007)
New Phytologist
, vol.173
, pp. 422-437
-
-
Beaulieu, J.M.1
Moles, A.T.2
Leitch, I.J.3
Bennett, M.D.4
Dickie, J.B.5
Knight, C.A.6
-
16
-
-
21044456515
-
The age of the angiosperms: A molecular time-scale without a clock
-
Bell, C. D., Soltis, D. E., and Soltis, P. S. 2005. The age of the angiosperms: A molecular time-scale without a clock. Evolution 59: 1245-1258.
-
(2005)
Evolution
, vol.59
, pp. 1245-1258
-
-
Bell, C.D.1
Soltis, D.E.2
Soltis, P.S.3
-
17
-
-
33744973813
-
Fast computation of supertrees for compatible phylogenies with nested taxa
-
Berry, V., and Semple, C. 2006. Fast computation of supertrees for compatible phylogenies with nested taxa. Syst. Biol. 55: 270-288.
-
(2006)
Syst. Biol
, vol.55
, pp. 270-288
-
-
Berry, V.1
Semple, C.2
-
18
-
-
2942600199
-
The evolution of supertrees
-
Bininda-Emonds, O. R. P. 2004. The evolution of supertrees. Trends Ecol. Evol. 19:315-322.
-
(2004)
Trends Ecol. Evol
, vol.19
, pp. 315-322
-
-
Bininda-Emonds, O.R.P.1
-
19
-
-
0035222013
-
Scaling of accuracy in extremely large phylogenetic trees
-
Bininda-Emonds, O. R. P., Brady, S. G., Kim, J., and Sanderson, M. J. 2002a. Scaling of accuracy in extremely large phylogenetic trees. Pacific Symposium on Biocomputing 6: 547-558.
-
(2002)
Pacific Symposium on Biocomputing
, vol.6
, pp. 547-558
-
-
Bininda-Emonds, O.R.P.1
Brady, S.G.2
Kim, J.3
Sanderson, M.J.4
-
20
-
-
0036931408
-
The (super)tree of life: Procedures, problems, and prospects
-
Bininda-Emonds, O. R. P., Gittleman, J. L., and Steel, M. A. 2002b. The (super)tree of life: procedures, problems, and prospects. Annu. Rev. Ecol. Syst. 33: 265-290.
-
(2002)
Annu. Rev. Ecol. Syst
, vol.33
, pp. 265-290
-
-
Bininda-Emonds, O.R.P.1
Gittleman, J.L.2
Steel, M.A.3
-
21
-
-
0035527411
-
Assessment of the accuracy of matrix representation with parsimony analysis supertree construction
-
Bininda-Emonds, O. R. P., and Sanderson, M. J. 2001. Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. Syst. Biol. 50: 565-579.
-
(2001)
Syst. Biol
, vol.50
, pp. 565-579
-
-
Bininda-Emonds, O.R.P.1
Sanderson, M.J.2
-
22
-
-
33846630522
-
-
Bloch J. I., Silcox, M. T., Boyer, D. M., and Sargis, E. J. 2007. Proc. Natl. Acad. Sci. USA 104: 1159-1164.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 1159-1164
-
-
Bloch, J.I.1
Silcox, M.T.2
Boyer, D.M.3
Sargis, E.J.4
-
24
-
-
0002133377
-
Evidence for the earliest stage of angiosperm pollen evolution: A paleoequatorial section from Israel
-
D. W. Taylor and L. J. Hickey [eds, Chapman and Hall, New York
-
Brenner, G. J. 1996. Evidence for the earliest stage of angiosperm pollen evolution: a paleoequatorial section from Israel. In: D. W. Taylor and L. J. Hickey [eds.], Flowering Plant Origin, Evolution, and Phylogeny, 91-115. Chapman and Hall, New York.
-
(1996)
Flowering Plant Origin, Evolution, and Phylogeny
, pp. 91-115
-
-
Brenner, G.J.1
-
25
-
-
54549085607
-
Parsimony via consensus
-
Bruen, T. C., and Bryant, D. 2008. Parsimony via consensus. Syst. Biol. 57: 251-256.
-
(2008)
Syst. Biol
, vol.57
, pp. 251-256
-
-
Bruen, T.C.1
Bryant, D.2
-
26
-
-
65349083699
-
Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis ofangiosperms
-
In press
-
Burleigh, J. G., Hilu, K. W., and Soltis, D. E. In press. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis ofangiosperms. BMC Evol. Biol.
-
BMC Evol. Biol
-
-
Burleigh, J.G.1
Hilu, K.W.2
Soltis, D.E.3
-
27
-
-
65349128389
-
-
Burleigh, J. G., Bansal, M. S., Eulenstein, O., Hartmann, S., Wehe, A., and Vision, T. J. In review. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 discordant gene trees.
-
Burleigh, J. G., Bansal, M. S., Eulenstein, O., Hartmann, S., Wehe, A., and Vision, T. J. In review. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 discordant gene trees.
-
-
-
-
28
-
-
0000031660
-
Phylogenetic relationships among seed plants based on rbcL sequence data
-
Chase, M., Soltis, D. E., Morgan, D., Olmsted, D., Duvall, M., Price, R., Hills, H., Palmer, J., Clegg, M., Rettig, J., Manhart, J., Systma, K., Rodman, J., Kress, J., Clark, D., Kron, K., Donoghue, M., Jansen, R., Wimpee, C., Smith, J., Furnier, G., Xiang, Q., Plunkett, G., Barrett, S., Soltis, P. S., Graham, A., Albert, V. 1993. Phylogenetic relationships among seed plants based on rbcL sequence data. Ann. Mo. Bot. Gard. 80: 528-580.
-
(1993)
Ann. Mo. Bot. Gard
, vol.80
, pp. 528-580
-
-
Chase, M.1
Soltis, D.E.2
Morgan, D.3
Olmsted, D.4
Duvall, M.5
Price, R.6
Hills, H.7
Palmer, J.8
Clegg, M.9
Rettig, J.10
Manhart, J.11
Systma, K.12
Rodman, J.13
Kress, J.14
Clark, D.15
Kron, K.16
Donoghue, M.17
Jansen, R.18
Wimpee, C.19
Smith, J.20
Furnier, G.21
Xiang, Q.22
Plunkett, G.23
Barrett, S.24
Soltis, P.S.25
Graham, A.26
Albert, V.27
more..
-
29
-
-
33845473904
-
Regional and phylogenetic variation variation of wood density across 2456 neotropical tree species
-
Chave, J., Muller-Landau, H. C., Baker, T. R., Easdale, T. A., Ter Steege, H., and Webb, C. O. 2006. Regional and phylogenetic variation variation of wood density across 2456 neotropical tree species. Ecol. Appl. 16: 2356-2367.
-
(2006)
Ecol. Appl
, vol.16
, pp. 2356-2367
-
-
Chave, J.1
Muller-Landau, H.C.2
Baker, T.R.3
Easdale, T.A.4
Ter Steege, H.5
Webb, C.O.6
-
30
-
-
55249097586
-
Improved heuristics for minimum-flip supertree construction
-
Chen, D., Eulenstein, O., Fernández-Baca, D., and Burleigh, J. G. 2006. Improved heuristics for minimum-flip supertree construction. Evol. Bioinformatics 2: 401-410.
-
(2006)
Evol. Bioinformatics
, vol.2
, pp. 401-410
-
-
Chen, D.1
Eulenstein, O.2
Fernández-Baca, D.3
Burleigh, J.G.4
-
31
-
-
33644700003
-
Towards automatic reconstruction of a highly resolved tree of life
-
Ciccarelli, F. D., Doerks, T., von Mering, C., Creevey, C. J., Snel, B., and Bork, P. 2006. Towards automatic reconstruction of a highly resolved tree of life. Science 311: 1283-1287.
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
32
-
-
84879883081
-
New oxygen isotope evidence for long-term Cretaceous climatic change in the Southern Hemisphere
-
Clark L. J., and Jenkyns, H. C. 1999. New oxygen isotope evidence for long-term Cretaceous climatic change in the Southern Hemisphere. Geology 27:699-702.
-
(1999)
Geology
, vol.27
, pp. 699-702
-
-
Clark, L.J.1
Jenkyns, H.C.2
-
33
-
-
0037036630
-
Going nuclear: Gene family evolution and vertebrate phylogeny reconciled
-
Cotton, J. A., and Page, R. D. M. 2002. Going nuclear: gene family evolution and vertebrate phylogeny reconciled. Proc. Roy. Soc. Lond. B Biol. Sci. 269: 1555-1561.
-
(2002)
Proc. Roy. Soc. Lond. B Biol. Sci
, vol.269
, pp. 1555-1561
-
-
Cotton, J.A.1
Page, R.D.M.2
-
34
-
-
34548566074
-
Majority-rule supertrees
-
Cotton, J. A., and Wilkinson, M. 2007. Majority-rule supertrees. Syst. Biol. 56: 445-452.
-
(2007)
Syst. Biol
, vol.56
, pp. 445-452
-
-
Cotton, J.A.1
Wilkinson, M.2
-
35
-
-
0028973842
-
The origin and early diversification of angiosperms
-
Crane, P.R., Friis, E. M., and Pedersen, K. R. 1995. The origin and early diversification of angiosperms. Nature 374: 27-33.
-
(1995)
Nature
, vol.374
, pp. 27-33
-
-
Crane, P.R.1
Friis, E.M.2
Pedersen, K.R.3
-
37
-
-
13844250623
-
Clann: Investigating phylogenetic information through supertree analyses
-
Creevey, C. J., and McInerney, J. O. 2005. Clann: investigating phylogenetic information through supertree analyses. Bioinformatics 21: 390-392.
-
(2005)
Bioinformatics
, vol.21
, pp. 390-392
-
-
Creevey, C.J.1
McInerney, J.O.2
-
38
-
-
34447341925
-
SDM: A fast distance-based approach for (super) tree building in phylogenomics
-
Criscuolo, A., Berry, V., Douzery, E. J. P., and Gascuel, O. 2006. SDM: a fast distance-based approach for (super) tree building in phylogenomics. Syst. Biol. 55: 740-755.
-
(2006)
Syst. Biol
, vol.55
, pp. 740-755
-
-
Criscuolo, A.1
Berry, V.2
Douzery, E.J.P.3
Gascuel, O.4
-
39
-
-
56149096455
-
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
-
doi:10.1093/nar/gkn502
-
Cronn, R., Liston, A., Parks, M., Gernandt, D. S., Shen, R., and Mockler, T. 2008. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res. doi:10.1093/nar/gkn502.
-
(2008)
Nucleic Acids Res
-
-
Cronn, R.1
Liston, A.2
Parks, M.3
Gernandt, D.S.4
Shen, R.5
Mockler, T.6
-
40
-
-
33744822985
-
Widespread genome duplications throughout the history of flowering plants
-
Cui, L., Wall, P. K., Leebens-Mack, J. H., Lindsay, B. G., Soltis, D. E., Doyle, J. J., Soltis, P. S., Carlson, J. E., Arumuganathan, K., Barakat, A., Albert, V. A., Ma, H., and dePamphilis, C. W. 2006. Widespread genome duplications throughout the history of flowering plants. Genome Res. 16: 738-749.
-
(2006)
Genome Res
, vol.16
, pp. 738-749
-
-
Cui, L.1
Wall, P.K.2
Leebens-Mack, J.H.3
Lindsay, B.G.4
Soltis, D.E.5
Doyle, J.J.6
Soltis, P.S.7
Carlson, J.E.8
Arumuganathan, K.9
Barakat, A.10
Albert, V.A.11
Ma, H.12
dePamphilis, C.W.13
-
41
-
-
33646839230
-
Supertree algorithms for nested taxa
-
Bininda-Emonds, O. R. P, Ed, Kluwer Academic Publishers, Dordrecht, Netherlands
-
Daniel, P., and Semple, C. 2004. Supertree algorithms for nested taxa. In: Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life. pp. 151-171. Bininda-Emonds, O. R. P., Ed., Kluwer Academic Publishers, Dordrecht, Netherlands.
-
(2004)
Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life
, pp. 151-171
-
-
Daniel, P.1
Semple, C.2
-
43
-
-
1242264357
-
Darwin's abominable mystery: Insights from a supertree of the angiosperms
-
Davies, T. J., Barraclough, T. G., Chase, M. W., Soltis, P. S., Soltis, D. E., and Savolainen, V. 2004. Darwin's abominable mystery: insights from a supertree of the angiosperms. Proc. Natl. Acad. Sci. USA 101: 1904-1909.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1904-1909
-
-
Davies, T.J.1
Barraclough, T.G.2
Chase, M.W.3
Soltis, P.S.4
Soltis, D.E.5
Savolainen, V.6
-
44
-
-
34548057478
-
Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests
-
Davis, C. C., Webb, C. O., Wurdack, K. J., Jaramillo, C. A., and Donoghue, M. J. 2005. Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests. Am. Nat. 165: E36-E65.
-
(2005)
Am. Nat
, vol.165
-
-
Davis, C.C.1
Webb, C.O.2
Wurdack, K.J.3
Jaramillo, C.A.4
Donoghue, M.J.5
-
45
-
-
33748766899
-
ESTimating phylogeny: Lessons from partitioning
-
De la Torre, J., Egan, M., Katari, M., Brenner, E., Stevenson, D., Coruzzi, G., and Desalle, R. 2006. ESTimating phylogeny: lessons from partitioning. BMC Evol. Biol. 6: 48.
-
(2006)
BMC Evol. Biol
, vol.6
, pp. 48
-
-
De la Torre, J.1
Egan, M.2
Katari, M.3
Brenner, E.4
Stevenson, D.5
Coruzzi, G.6
Desalle, R.7
-
46
-
-
33845627286
-
The supermatrix approach to systematics
-
De Queiroz, A., and Gatesy, J. 2007. The supermatrix approach to systematics. Trends Ecol. Evol. 22: 34-41.
-
(2007)
Trends Ecol. Evol
, vol.22
, pp. 34-41
-
-
De Queiroz, A.1
Gatesy, J.2
-
47
-
-
0000827553
-
Evolutionary analysis of the large subunit of carboxylase (rbcL) nucleotide sequence among the grasses (Gramineae)
-
Doebley, J., Durbin, M., Golenberg, E. M., Clegg, M. T., and Ma, D. P. 1990. Evolutionary analysis of the large subunit of carboxylase (rbcL) nucleotide sequence among the grasses (Gramineae) Evolution 44: 1097-1108.
-
(1990)
Evolution
, vol.44
, pp. 1097-1108
-
-
Doebley, J.1
Durbin, M.2
Golenberg, E.M.3
Clegg, M.T.4
Ma, D.P.5
-
48
-
-
0024927549
-
Phylogenies and the analysis of evolutionary sequences, with examples from plants
-
Donoghue, M. J. 1989. Phylogenies and the analysis of evolutionary sequences, with examples from plants. Evolution 43: 1137-1156.
-
(1989)
Evolution
, vol.43
, pp. 1137-1156
-
-
Donoghue, M.J.1
-
49
-
-
0031926032
-
Phylogeny and the evolution of flower symmetry in the Asteridae
-
Donoghue, M. J., Ree, R. H., and Baum, D. A. 1998. Phylogeny and the evolution of flower symmetry in the Asteridae. Trends Plant Sci. 3: 311-317.
-
(1998)
Trends Plant Sci
, vol.3
, pp. 311-317
-
-
Donoghue, M.J.1
Ree, R.H.2
Baum, D.A.3
-
50
-
-
0038215981
-
Significance of molecular phylogenetic analyses for paleobotanical investigations on the origin of angiosperms
-
Doyle, J. A. 2001. Significance of molecular phylogenetic analyses for paleobotanical investigations on the origin of angiosperms. Palaeobotanist 50: 167-188.
-
(2001)
Palaeobotanist
, vol.50
, pp. 167-188
-
-
Doyle, J.A.1
-
52
-
-
8444222732
-
Prospects for building the tree of life from large sequence databases
-
Driskell, A. C., Ane, C., Burleigh, J. G., McMahon, M. M., O'Meara, B. C., and Sanderson, M. J. 2004. Prospects for building the tree of life from large sequence databases. Science 306: 1172-1174.
-
(2004)
Science
, vol.306
, pp. 1172-1174
-
-
Driskell, A.C.1
Ane, C.2
Burleigh, J.G.3
McMahon, M.M.4
O'Meara, B.C.5
Sanderson, M.J.6
-
53
-
-
0000338290
-
Phylogenetic hypotheses for the monocotyledons constructed form rbcL sequences
-
Duvall, M. R., Clegg, M. T., Chase, M. W., Lark, W. D., Kress, W. J., Hills, H. G., Eguiarte, L. E., Smith, J. F., Gaut, B. S., Zimmer, E. A., and Learn G. H., Jr. 1993. Phylogenetic hypotheses for the monocotyledons constructed form rbcL sequences. Annals Missouri Botanical Garden 80: 607-619.
-
(1993)
Annals Missouri Botanical Garden
, vol.80
, pp. 607-619
-
-
Duvall, M.R.1
Clegg, M.T.2
Chase, M.W.3
Lark, W.D.4
Kress, W.J.5
Hills, H.G.6
Eguiarte, L.E.7
Smith, J.F.8
Gaut, B.S.9
Zimmer, E.A.10
Learn Jr., G.H.11
-
54
-
-
34347256397
-
High-resolution species trees without concatenation
-
Edwards, S.V., Liu, L., and Pearl, D.K. 2007. High-resolution species trees without concatenation. Proc. Natl. Acad. Sci. USA 104: 5936-5941.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 5936-5941
-
-
Edwards, S.V.1
Liu, L.2
Pearl, D.K.3
-
55
-
-
0033480324
-
A few logs suffice to build (almost) all trees (I)
-
Erdös, P. L., Steel, M. A., Székely, L. A., and Warnow, T. J. 1999. A few logs suffice to build (almost) all trees (I). Random Struc. Alg. 14: 153-184.
-
(1999)
Random Struc. Alg
, vol.14
, pp. 153-184
-
-
Erdös, P.L.1
Steel, M.A.2
Székely, L.A.3
Warnow, T.J.4
-
56
-
-
2442598026
-
Performance of flip supertree construction with heuristic algorithm
-
Eulenstein, O., Chen, D., Burleigh, J. G., Fernández-Baca, D., and Sanderson, M. J. 2004. Performance of flip supertree construction with heuristic algorithm. Syst. Biol. 53: 299-308.
-
(2004)
Syst. Biol
, vol.53
, pp. 299-308
-
-
Eulenstein, O.1
Chen, D.2
Burleigh, J.G.3
Fernández-Baca, D.4
Sanderson, M.J.5
-
57
-
-
0032795196
-
Early angiosperm diversification: The diversity of pollen associated with angiosperm reproductive structures in early Cretaceous floras from Portugal
-
Friis, E. M., Crane, P. R., and Pedersen, K. R. 1999. Early angiosperm diversification: the diversity of pollen associated with angiosperm reproductive structures in early Cretaceous floras from Portugal. Annals Missouri Botanical Garden 86: 259-296.
-
(1999)
Annals Missouri Botanical Garden
, vol.86
, pp. 259-296
-
-
Friis, E.M.1
Crane, P.R.2
Pedersen, K.R.3
-
58
-
-
0033680066
-
Reproductive structure and organization of basal angiosperms from the early Cretaceous (Barremian or Aptian) of western Portugal
-
Friis, E. M., Crane, P. R., and Pedersen, K. R. 2000. Reproductive structure and organization of basal angiosperms from the early Cretaceous (Barremian or Aptian) of western Portugal. International Journal ofPlant Sciences 161: S169-S182.
-
(2000)
International Journal ofPlant Sciences
, vol.161
-
-
Friis, E.M.1
Crane, P.R.2
Pedersen, K.R.3
-
59
-
-
0035868707
-
Fossil evidence of waterlilies (Nymphaeales) in the Early Cretaceous
-
Friis, E. M., Crane, P. R., and Pedersen, K. R. 2001. Fossil evidence of waterlilies (Nymphaeales) in the Early Cretaceous. Nature 410: 357-360.
-
(2001)
Nature
, vol.410
, pp. 357-360
-
-
Friis, E.M.1
Crane, P.R.2
Pedersen, K.R.3
-
60
-
-
0002335272
-
Angiosperm floral structures from the Early Cretaceous of Portugal
-
Friis, E. M., Pedersen, K. R., and Crane, P. R. 1994. Angiosperm floral structures from the Early Cretaceous of Portugal. Plant Systematics and Evolution, Supplement 8: 31-49.
-
(1994)
Plant Systematics and Evolution, Supplement
, vol.8
, pp. 31-49
-
-
Friis, E.M.1
Pedersen, K.R.2
Crane, P.R.3
-
61
-
-
11844299096
-
When earth started blooming: Insights from the fossil record
-
Friis, E. M., Pedersen, K. R., and Crane, P. R. 2005. When earth started blooming: insights from the fossil record. Curr Opin Plant Biol 8: 5-12.
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 5-12
-
-
Friis, E.M.1
Pedersen, K.R.2
Crane, P.R.3
-
62
-
-
0034042674
-
The mostly male theory of flower evolutionary origins: From genes to fossils
-
Frohlich, M. W., and Parker, D. S. 2000. The mostly male theory of flower evolutionary origins: from genes to fossils. Syst. Bot. 25: 155-170.
-
(2000)
Syst. Bot
, vol.25
, pp. 155-170
-
-
Frohlich, M.W.1
Parker, D.S.2
-
63
-
-
22844438847
-
Hidden likelihood support in genomic data: Can forty-five wrongs make a right?
-
Gatesy, J., and Baker, R. H. 2005. Hidden likelihood support in genomic data: can forty-five wrongs make a right? Syst. Biol. 54: 483-492.
-
(2005)
Syst. Biol
, vol.54
, pp. 483-492
-
-
Gatesy, J.1
Baker, R.H.2
-
64
-
-
2442449251
-
Inconsistencies in arguments for the supertree approach: Supermatrices versus supertrees of Crocodylia
-
Gatesy, J., Baker, R. H., and Hayashi, C. 2004. Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. Syst. Biol. 53: 342-355.
-
(2004)
Syst. Biol
, vol.53
, pp. 342-355
-
-
Gatesy, J.1
Baker, R.H.2
Hayashi, C.3
-
65
-
-
0030983892
-
Launching microsatellites: A review of mutation processes and methods of phylogenetic inference
-
Goldstein, D. G., and Pollock, D. D. 1997. Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. J. Hered. 88: 335-342.
-
(1997)
J. Hered
, vol.88
, pp. 335-342
-
-
Goldstein, D.G.1
Pollock, D.D.2
-
66
-
-
27544472307
-
Minority-rule supertrees? MRP, compatibility, and minimum flip may display the least frequent groups
-
Goloboff, P. A. 2005. Minority-rule supertrees? MRP, compatibility, and minimum flip may display the least frequent groups. Cladistics 21: 282-294.
-
(2005)
Cladistics
, vol.21
, pp. 282-294
-
-
Goloboff, P.A.1
-
67
-
-
45749124657
-
TNT, a free program for phylogenetic analysis
-
Goloboff, P.,Farris, J., and Nixon, K. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.
-
(2008)
Cladistics
, vol.24
, pp. 774-786
-
-
Goloboff, P.1
Farris, J.2
Nixon, K.3
-
68
-
-
34548554071
-
On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT
-
Goloboff, P. A., and Pol, D. 2007. On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT. Syst. Biol. 56: 485-495.
-
(2007)
Syst. Biol
, vol.56
, pp. 485-495
-
-
Goloboff, P.A.1
Pol, D.2
-
69
-
-
0000365320
-
Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
-
Goodman, M., Czelusniak, J., Moore, G. W., Romeroherrera, A. E., and Matsuda, G. 1979. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst. Zool. 28: 132-163.
-
(1979)
Syst. Zool
, vol.28
, pp. 132-163
-
-
Goodman, M.1
Czelusniak, J.2
Moore, G.W.3
Romeroherrera, A.E.4
Matsuda, G.5
-
70
-
-
0041834716
-
Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
-
Goremykin, V., Hirsch-Ernst, K. I., Wolfl, S., andHellwig, F. H. 2003. Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol. Biol. Evol. 20: 1499-1505.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 1499-1505
-
-
Goremykin, V.1
Hirsch-Ernst, K.I.2
Wolfl, S.3
andHellwig, F.H.4
-
71
-
-
3042683994
-
The chloroplast genome of Nymphaea alba: Whole-genome analyses and the problem of identifying the most basal angiosperm
-
Goremykin, V., Hirsch-Ernst, K. I., Wölfl, S., and Hellwig, F. H. 2004. The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm. Mol. Biol. Evol. 21:1445-1454.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 1445-1454
-
-
Goremykin, V.1
Hirsch-Ernst, K.I.2
Wölfl, S.3
Hellwig, F.H.4
-
72
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
Graybeal, A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst. Biol. 47: 9-17.
-
(1998)
Syst. Biol
, vol.47
, pp. 9-17
-
-
Graybeal, A.1
-
73
-
-
4344631970
-
Evolution of genome size in pines (Pinus) and its life history correlates: Supertree analysis
-
Grotkopp, E., Rejmanek, M., Sanderson, M. J., and Rost, T. L. 2004. Evolution of genome size in pines (Pinus) and its life history correlates: supertree analysis. Evolution 58: 1705-1729.
-
(2004)
Evolution
, vol.58
, pp. 1705-1729
-
-
Grotkopp, E.1
Rejmanek, M.2
Sanderson, M.J.3
Rost, T.L.4
-
74
-
-
0030253222
-
Reconstruction of ancient molecular phylogeny
-
Guigó, R., Muchnik, I., and Smith, T. F. 1996. Reconstruction of ancient molecular phylogeny. Mol Phylogenet Evol. 6: 189-213.
-
(1996)
Mol Phylogenet Evol
, vol.6
, pp. 189-213
-
-
Guigó, R.1
Muchnik, I.2
Smith, T.F.3
-
75
-
-
0001827735
-
Ribosomal RNA sequences for inferring phylogeny wirthin the grass family (Poaceae)
-
Hamby, R. K., and Zimmer, E. A. 1992. Ribosomal RNA sequences for inferring phylogeny wirthin the grass family (Poaceae). Plant Syst. Evol. 160: 29-37.
-
(1992)
Plant Syst. Evol
, vol.160
, pp. 29-37
-
-
Hamby, R.K.1
Zimmer, E.A.2
-
77
-
-
43249090276
-
Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?
-
Hartmann, S., and Vision, T. J. 2008. Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment? BMC Evol Biol. 8: 95.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 95
-
-
Hartmann, S.1
Vision, T.J.2
-
78
-
-
0032965634
-
Perspective: Highly variable loci and their interpretation in evolution and conservation
-
Hedrick, P. W. 1999. Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318.
-
(1999)
Evolution
, vol.53
, pp. 313-318
-
-
Hedrick, P.W.1
-
79
-
-
13944260105
-
Timing of Early Cretaceous angiosperm diversification and possible links to major paleoenvironmental change
-
Heimhofer U., Hochuli P. A., Burla S., Dinis J. M. L., and Weissert, H. 2005. Timing of Early Cretaceous angiosperm diversification and possible links to major paleoenvironmental change. Geology 33: 141-144.
-
(2005)
Geology
, vol.33
, pp. 141-144
-
-
Heimhofer, U.1
Hochuli, P.A.2
Burla, S.3
Dinis, J.M.L.4
Weissert, H.5
-
80
-
-
0003671904
-
-
2nd Edition. Sinauer Associates, Sunderland, MA
-
Hillis, D. M., Moritz, C., and Mable, B. K. 1996. Molecular Systematics, 2nd Edition. Sinauer Associates, Sunderland, MA.
-
(1996)
Molecular Systematics
-
-
Hillis, D.M.1
Moritz, C.2
Mable, B.K.3
-
81
-
-
65349182630
-
-
Hughes, N. F. 1994. The Enigma ofAngiosperm Origins. Cambridge University Press, Cambridge, UK. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
Hughes, N. F. 1994. The Enigma ofAngiosperm Origins. Cambridge University Press, Cambridge, UK. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
-
-
-
82
-
-
37649007931
-
Analysis of 81 genes from 64 chloroplast genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen, R. K., Cai, Z., Raubeson, L. A., Daniell, H., dePamphilis, C. W., Leebens-Mack, J., Müller, K. F., Guisinger-Bellian, M., Haberle, R. C., Hansen, A. K., Chumley, T. W., Lee, S.-B., Peery, R., McNeal, J., Kuehl, J. V., and Boore, J. L. 2007. Analysis of 81 genes from 64 chloroplast genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc. Nat. Acad. Sci. USA 104: 19369-19374.
-
(2007)
Proc. Nat. Acad. Sci. USA
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
dePamphilis, C.W.5
Leebens-Mack, J.6
Müller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
Chumley, T.W.11
Lee, S.-B.12
Peery, R.13
McNeal, J.14
Kuehl, J.V.15
Boore, J.L.16
-
83
-
-
0043015531
-
Microsatellites, from molecules to populations and back
-
Jarne, P., and Lagoda, P. J. L. 1996. Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 11: 424-430.
-
(1996)
Trends Ecol. Evol
, vol.11
, pp. 424-430
-
-
Jarne, P.1
Lagoda, P.J.L.2
-
84
-
-
33645850710
-
Phylogenomics: The beginning of incongruence?
-
Jeffroy, O., Brinkmann, H., Delsuc, F., and Philippe, H. 2006. Phylogenomics: the beginning of incongruence? Trends Genet. 22: 225-231.
-
(2006)
Trends Genet
, vol.22
, pp. 225-231
-
-
Jeffroy, O.1
Brinkmann, H.2
Delsuc, F.3
Philippe, H.4
-
85
-
-
45249124620
-
Resolving an ancient, rapid radiation in Saxifragales
-
Jian, S., Soltis, P. S., Gitzendanner, M., Moore, M., Li, R., Hendry, T., Qiu, Y., Dhingra, A., Bell, C., and Soltis, D. E. 2008. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology 57: 1-20.
-
(2008)
Systematic Biology
, vol.57
, pp. 1-20
-
-
Jian, S.1
Soltis, P.S.2
Gitzendanner, M.3
Moore, M.4
Li, R.5
Hendry, T.6
Qiu, Y.7
Dhingra, A.8
Bell, C.9
Soltis, D.E.10
-
86
-
-
0032773940
-
Homoplasy increases phylogenetic structure
-
Källersjö M., Albert, V. A., and Farris, J. S. 1999. Homoplasy increases phylogenetic structure. Cladistics 15: 91-93.
-
(1999)
Cladistics
, vol.15
, pp. 91-93
-
-
Källersjö, M.1
Albert, V.A.2
Farris, J.S.3
-
87
-
-
35348939377
-
Progress and challenges in studies of the evolution of development
-
Kellogg, E. A. 2006. Progress and challenges in studies of the evolution of development. J. Exp. Bot. 57: 3505-3516.
-
(2006)
J. Exp. Bot
, vol.57
, pp. 3505-3516
-
-
Kellogg, E.A.1
-
88
-
-
0035103260
-
Performance of a divergence time estimation method under a probabilistic model of rate evolution
-
Kishino, H., Thorne, J. L., and Bruno, W. J. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 18: 352-361.
-
(2001)
Mol. Biol. Evol
, vol.18
, pp. 352-361
-
-
Kishino, H.1
Thorne, J.L.2
Bruno, W.J.3
-
89
-
-
24744449757
-
Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the Felsenstein zone
-
Leebens-Mack, J., Raubeson, L. A., Cui, L., Kuehl, J. V., Fourcade, M. H., Chumley, T. W., Boore, J. L., Jansen, R. K., and dePamphilis, C. W. 2005. Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the Felsenstein zone. Mol. Biol. Evol. 22: 1948-1963.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1948-1963
-
-
Leebens-Mack, J.1
Raubeson, L.A.2
Cui, L.3
Kuehl, J.V.4
Fourcade, M.H.5
Chumley, T.W.6
Boore, J.L.7
Jansen, R.K.8
dePamphilis, C.W.9
-
91
-
-
34548575126
-
-
Liu, L., and Pearl, D. K. 2007. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56: 504-514. Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46: 523-536.
-
Liu, L., and Pearl, D. K. 2007. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56: 504-514. Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46: 523-536.
-
-
-
-
92
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y. J., Chen, Z. et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
-
93
-
-
0036699004
-
Perils of paralogy: Using HSP70 genes for inferring organismal phylogenies
-
Martin, A. P., and Burg, T. M. 2002. Perils of paralogy: using HSP70 genes for inferring organismal phylogenies. Systematic Biology 41: 570-587.
-
(2002)
Systematic Biology
, vol.41
, pp. 570-587
-
-
Martin, A.P.1
Burg, T.M.2
-
94
-
-
0033615479
-
The root of angiosperm phylogeny inferred from duplicate phytochrome genes
-
Mathews, S., and Donoghue, M. J. 1999. The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science 286: 947-950.
-
(1999)
Science
, vol.286
, pp. 947-950
-
-
Mathews, S.1
Donoghue, M.J.2
-
95
-
-
56549101000
-
The vestigial olfactory receptor subgenome of odontocete whales: Phylogenetic congruence between gene-tree reconciliation and supermatrix methods
-
McGowen, M. R., Clark, C., and Gatesy, J. 2008. The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods. Syst. Biol. 57: 574-590.
-
(2008)
Syst. Biol
, vol.57
, pp. 574-590
-
-
McGowen, M.R.1
Clark, C.2
Gatesy, J.3
-
96
-
-
34547803149
-
Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes
-
McMahon, M. M., and Sanderson, M. J. 2006. Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes. Syst. Biol. 55: 818-836.
-
(2006)
Syst. Biol
, vol.55
, pp. 818-836
-
-
McMahon, M.M.1
Sanderson, M.J.2
-
97
-
-
28844463698
-
Emerging technologies in DNA sequencing
-
Metzker, M. L. 2005. Emerging technologies in DNA sequencing. Genome Res. 15: 1767-1776.
-
(2005)
Genome Res
, vol.15
, pp. 1767-1776
-
-
Metzker, M.L.1
-
98
-
-
12844254898
-
A brief history of seed size
-
Moles, A., Ackerley, D., Webb, C., Tweedle, J., Dickie, J., and Westoby, M. 2005. A brief history of seed size. Science 307: 576-580.
-
(2005)
Science
, vol.307
, pp. 576-580
-
-
Moles, A.1
Ackerley, D.2
Webb, C.3
Tweedle, J.4
Dickie, J.5
Westoby, M.6
-
99
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal an- giosperms
-
Moore, M. J., Bell, C.D., Soltis, P. S., and Soltis, D. E. 2007. Using plastid genome-scale data to resolve enigmatic relationships among basal an- giosperms. Proc. Natl. Acad. Sci. USA 104: 19363-19368.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19363-19368
-
-
Moore, M.J.1
Bell, C.D.2
Soltis, P.S.3
Soltis, D.E.4
-
100
-
-
33748685014
-
Rapid and accurate pyrosequencing of angiosperm plastid genomes
-
Moore, M. J., Dhingra, A., Soltis, P. S., Shaw, R., Farmerie, W. G., Folta, K. M., and Soltis, D. E. 2006. Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC Plant Biol 6: 17.
-
(2006)
BMC Plant Biol
, vol.6
, pp. 17
-
-
Moore, M.J.1
Dhingra, A.2
Soltis, P.S.3
Shaw, R.4
Farmerie, W.G.5
Folta, K.M.6
Soltis, D.E.7
-
101
-
-
25144465712
-
How much can evolved characters tell us about the tree that generated them?
-
Gascuel, O, Steel, M, Eds, Oxford Univ. Press, Oxford
-
Mossel, E., and Steel, M. 2005. How much can evolved characters tell us about the tree that generated them? In: Mathematics ofEvolution and Phylogeny. pp. 384-412. Gascuel, O., Steel, M., Eds., Oxford Univ. Press, Oxford.
-
(2005)
Mathematics ofEvolution and Phylogeny
, pp. 384-412
-
-
Mossel, E.1
Steel, M.2
-
102
-
-
0025116138
-
Phylogenetic relationships of the Santalales and relatives
-
Nickrent, D. L., and Franchina, C. R. 1990. Phylogenetic relationships of the Santalales and relatives. J. Mol. Evol. 31: 294-301.
-
(1990)
J. Mol. Evol
, vol.31
, pp. 294-301
-
-
Nickrent, D.L.1
Franchina, C.R.2
-
103
-
-
0000805274
-
A parsimony analysis of the Asteridae sensu lato based on rbcL sequences
-
Olmstead, R. G., Bremer, B., Scott, K. M., and Palmer, J. D. 1993. A parsimony analysis of the Asteridae sensu lato based on rbcL sequences. Ann. Mo. Bot. Gard. 80: 700-722.
-
(1993)
Ann. Mo. Bot. Gard
, vol.80
, pp. 700-722
-
-
Olmstead, R.G.1
Bremer, B.2
Scott, K.M.3
Palmer, J.D.4
-
104
-
-
56849127431
-
Large-scale maximum-likelihood based phylogenetic analysis on the IBM Blue-Gene/L
-
Ott, M., Zola, J., Aluru, S., and Stamatakis, A. 2007. Large-scale maximum-likelihood based phylogenetic analysis on the IBM Blue-Gene/L. Proc. IEEE/ ACM Supercomputing Conference 2007.
-
(2007)
Proc. IEEE/ ACM Supercomputing Conference 2007
-
-
Ott, M.1
Zola, J.2
Aluru, S.3
Stamatakis, A.4
-
105
-
-
0031774059
-
GeneTree: Comparing gene and species trees using reconciled trees
-
Page, R. D. M. 1998. GeneTree: comparing gene and species trees using reconciled trees. Bioinformatics 14: 819-820.
-
(1998)
Bioinformatics
, vol.14
, pp. 819-820
-
-
Page, R.D.M.1
-
106
-
-
0033936591
-
Extracting species trees from complex gene trees: Reconciled trees and the vertebrate phylogeny
-
Page, R. D. M. 2000. Extracting species trees from complex gene trees: reconciled trees and the vertebrate phylogeny. Mol. Phylogent. Evol. 14: 89-106.
-
(2000)
Mol. Phylogent. Evol
, vol.14
, pp. 89-106
-
-
Page, R.D.M.1
-
108
-
-
0002377180
-
Evolution of chloroplast and mitochondrial DNA in plants and algae
-
R. J. MacIntyre Ed, Plenum, New York, NY
-
Palmer, J. D. 1985. Evolution of chloroplast and mitochondrial DNA in plants and algae. Molecular Evolutionary Genetics. pp. 131-238. R. J. MacIntyre Ed., Plenum, New York, NY.
-
(1985)
Molecular Evolutionary Genetics
, pp. 131-238
-
-
Palmer, J.D.1
-
109
-
-
0002696220
-
Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation
-
Palmer, J. D. 1987. Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Am. Nat. 130: S6-S29.
-
(1987)
Am. Nat
, vol.130
-
-
Palmer, J.D.1
-
110
-
-
17844393939
-
The plant tree of life: An overview and some points of view
-
Palmer, J. D., Soltis, D. E., and Chase, M. W. 2004. The plant tree of life: An overview and some points of view. Amer. J. Bot.91: 1437-1445.
-
(2004)
Amer. J. Bot
, vol.91
, pp. 1437-1445
-
-
Palmer, J.D.1
Soltis, D.E.2
Chase, M.W.3
-
111
-
-
65349136069
-
Studies on higher plant chloroplast and mitochondrial DNA
-
Palmer, J. D., and Thompson, W. F. 1980. Studies on higher plant chloroplast and mitochondrial DNA. Carnegie Institution Year Book 79: 120-123.
-
(1980)
Carnegie Institution Year Book
, vol.79
, pp. 120-123
-
-
Palmer, J.D.1
Thompson, W.F.2
-
112
-
-
0019851746
-
Rearrangements in the chloroplast genomes of mung bean and pea
-
Palmer, J. D., and Thompson, W. F. 1981. Rearrangements in the chloroplast genomes of mung bean and pea. Proc. Natl. Acad. Sci. USA 78: 5533-5537.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 5533-5537
-
-
Palmer, J.D.1
Thompson, W.F.2
-
113
-
-
0020144964
-
Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost
-
Palmer, J. D., and Thompson, W. F. 1982. Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost. Cell 29: 537-550.
-
(1982)
Cell
, vol.29
, pp. 537-550
-
-
Palmer, J.D.1
Thompson, W.F.2
-
114
-
-
0036005524
-
Matrix representation with parsimony, taxonomic congruence, and total evidence
-
Pisani, D., and Wilkinson, M. 2002. Matrix representation with parsimony, taxonomic congruence, and total evidence. Syst. Biol. 51: 151-155.
-
(2002)
Syst. Biol
, vol.51
, pp. 151-155
-
-
Pisani, D.1
Wilkinson, M.2
-
115
-
-
0001741936
-
Relationship of the order Apiales to subclass Asteridae: A re-evaluation of morphological characters based on insights from molecular data
-
Plunkett, G. M. 2001. Relationship of the order Apiales to subclass Asteridae: a re-evaluation of morphological characters based on insights from molecular data. Edinb. J. Bot. 58: 183-200.
-
(2001)
Edinb. J. Bot
, vol.58
, pp. 183-200
-
-
Plunkett, G.M.1
-
116
-
-
35748953750
-
Multiplex amplification of large sets of human exons
-
Porreca G. J., Zhang, K., Li, J. B., Xie, B., Austin, D., Vassallo, S. L., LeProust, E. M., Peck, B. J., Emig, C. J., Dahl, F. et al: Multiplex amplification of large sets of human exons. Nat. Methods 4: 931-936.
-
Nat. Methods
, vol.4
, pp. 931-936
-
-
Porreca, G.J.1
Zhang, K.2
Li, J.B.3
Xie, B.4
Austin, D.5
Vassallo, S.L.6
LeProust, E.M.7
Peck, B.J.8
Emig, C.J.9
Dahl, F.10
-
117
-
-
0035283384
-
Chloroplast microsatel-lites: New tools for studies in plant ecology and evolution
-
Provan, J., Powell, W., and Hollingsworth, P. M. 2001. Chloroplast microsatel-lites: new tools for studies in plant ecology and evolution. Trends Ecol. Evol. 16: 142-147.
-
(2001)
Trends Ecol. Evol
, vol.16
, pp. 142-147
-
-
Provan, J.1
Powell, W.2
Hollingsworth, P.M.3
-
118
-
-
0029495388
-
A modification to Baum and Ragan's method for combining phylogenetic trees
-
Purvis, A. 1995. A modification to Baum and Ragan's method for combining phylogenetic trees. Syst. Biol. 44: 251-255.
-
(1995)
Syst. Biol
, vol.44
, pp. 251-255
-
-
Purvis, A.1
-
119
-
-
0000031661
-
Molecular phy-logenetics of the Magnoliidae: Cladistic analyses of nucleotide sequences of the plastid gene rbcL
-
Qiu, Y.-L., Chase, M. W., Les, D. H., and Parks, C. R. 1993. Molecular phy-logenetics of the Magnoliidae: cladistic analyses of nucleotide sequences of the plastid gene rbcL. Ann. Mo. Bot. Gard. 80: 587-606.
-
(1993)
Ann. Mo. Bot. Gard
, vol.80
, pp. 587-606
-
-
Qiu, Y.-L.1
Chase, M.W.2
Les, D.H.3
Parks, C.R.4
-
120
-
-
23944484422
-
Phylo-genetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes
-
Qiu, Y.-L., Dombrovska, O., Lee, J., Li, L., Whitlock, B. A., Bernasconi-Quadroni, F., Rest, J. S., Davis, C. C., Borsch, T., Hilu, K. W., Renner, S. S., Soltis, D. E., Soltis, P. S., Zanis, M. J., Cannone, J. J., Gutell, R. R., Powell, M., Savolainen, V., Chatrou, L. W., and Chase, M. W. 2005. Phylo-genetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes. Int. J. Plant. Sci. 166: 815-842.
-
(2005)
Int. J. Plant. Sci
, vol.166
, pp. 815-842
-
-
Qiu, Y.-L.1
Dombrovska, O.2
Lee, J.3
Li, L.4
Whitlock, B.A.5
Bernasconi-Quadroni, F.6
Rest, J.S.7
Davis, C.C.8
Borsch, T.9
Hilu, K.W.10
Renner, S.S.11
Soltis, D.E.12
Soltis, P.S.13
Zanis, M.J.14
Cannone, J.J.15
Gutell, R.R.16
Powell, M.17
Savolainen, V.18
Chatrou, L.W.19
Chase, M.W.20
more..
-
121
-
-
0026822436
-
Phylogenetic inference based on matrix representation of trees
-
Ragan, M. A. 1992. Phylogenetic inference based on matrix representation of trees. Mol. Phylogenet. Evol. 1: 53-58.
-
(1992)
Mol. Phylogenet. Evol
, vol.1
, pp. 53-58
-
-
Ragan, M.A.1
-
122
-
-
5444244910
-
Chloroplast genomes of plants
-
R. J. Henry, editor, CABI Publishing, Cambridge, MA
-
Raubeson, L. A., and Jansen, R. K. 2005. Chloroplast genomes of plants. pages 45-68. In: R. J. Henry, editor. Plant Diversity and Evolution: Genotypic and Phenotypic Variation in Higher Plants. CABI Publishing, Cambridge, MA.
-
(2005)
Plant Diversity and Evolution: Genotypic and Phenotypic Variation in Higher Plants
, pp. 45-68
-
-
Raubeson, L.A.1
Jansen, R.K.2
-
123
-
-
0002797404
-
Evolutionary analysis of plant DNA sequences
-
Ritland, K., and Clegg, M. T. 1987. Evolutionary analysis of plant DNA sequences. Am. Nat. 130: S74-S100.
-
(1987)
Am. Nat
, vol.130
-
-
Ritland, K.1
Clegg, M.T.2
-
124
-
-
33947248069
-
Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree
-
Saarela, J. M., Rai, H. S., Doyle, J. A., Endress, P. K, Mathews, S., Marchant, A. D., Briggs, B. G., and Graham, S. W. 2007. Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree. Nature 446: 312-315.
-
(2007)
Nature
, vol.446
, pp. 312-315
-
-
Saarela, J.M.1
Rai, H.S.2
Doyle, J.A.3
Endress, P.K.4
Mathews, S.5
Marchant, A.D.6
Briggs, B.G.7
Graham, S.W.8
-
125
-
-
0036005526
-
Building supertrees: An empirical assessment using the grass family (Poaceae)
-
Salamin, N., Chase, M. W., Hodkinson, T. R., and Savolainen, V. 2002. Building supertrees: an empirical assessment using the grass family (Poaceae). Syst. Biol. 51: 136-150.
-
(2002)
Syst. Biol
, vol.51
, pp. 136-150
-
-
Salamin, N.1
Chase, M.W.2
Hodkinson, T.R.3
Savolainen, V.4
-
126
-
-
19044382857
-
Towards building the tree of life: A simulation study for all angiosperm genera
-
Salamin, N., Hodkinson, T. R., and Savolainen, V. 2005. Towards building the tree of life: a simulation study for all angiosperm genera. Syst. Biol. 54: 183-196.
-
(2005)
Syst. Biol
, vol.54
, pp. 183-196
-
-
Salamin, N.1
Hodkinson, T.R.2
Savolainen, V.3
-
127
-
-
0036135468
-
Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
-
Sanderson, M. J. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19: 101-109.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 101-109
-
-
Sanderson, M.J.1
-
128
-
-
34548403121
-
Construction and annotation of large phylogenetic trees
-
Sanderson, M. J. 2007. Construction and annotation of large phylogenetic trees. Australian Syst. Bot. 20: 287-301.
-
(2007)
Australian Syst. Bot
, vol.20
, pp. 287-301
-
-
Sanderson, M.J.1
-
129
-
-
46849087728
-
Phylogenetic signal in the eukaryotic tree oflife
-
Sanderson, M. J. 2008. Phylogenetic signal in the eukaryotic tree oflife. Science 321: 121-123.
-
(2008)
Science
, vol.321
, pp. 121-123
-
-
Sanderson, M.J.1
-
130
-
-
84868925456
-
Fragmentation of large data sets in phylogenetic analysis
-
Gascuel, O, and Steel, M, Eds, Oxford Univ. Press, Oxford
-
Sanderson, M. J., Ané, C., Eulenstein, O., Fernández-Baca, D., Kim, J., McMahon, M. M., Piaggio-Talice, R. 2007. Fragmentation of large data sets in phylogenetic analysis. In: Mathematics ofEvolution and Phylogeny II. Gascuel, O., and Steel, M., Eds., Oxford Univ. Press, Oxford.
-
(2007)
Mathematics ofEvolution and Phylogeny II
-
-
Sanderson, M.J.1
Ané, C.2
Eulenstein, O.3
Fernández-Baca, D.4
Kim, J.5
McMahon, M.M.6
Piaggio-Talice, R.7
-
131
-
-
0042695888
-
The challenge of constructing large phylogenetic trees
-
Sanderson, M. J., and Driskell, A. C. 2003. The challenge of constructing large phylogenetic trees. Trends Plant Sci. 8: 374-379.
-
(2003)
Trends Plant Sci
, vol.8
, pp. 374-379
-
-
Sanderson, M.J.1
Driskell, A.C.2
-
132
-
-
0038158155
-
Obtaining maximal concatenated phylogenetic data sets from large sequence databases
-
Sanderson, M. J., Driskell, A. C., Ree, R. H., Eulenstein, O., and Langley, S. 2003. Obtaining maximal concatenated phylogenetic data sets from large sequence databases. Mol. Biol. Evol. 20: 1036-1042.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 1036-1042
-
-
Sanderson, M.J.1
Driskell, A.C.2
Ree, R.H.3
Eulenstein, O.4
Langley, S.5
-
133
-
-
34248217100
-
Inferring angiosperm phylogeny from EST data with widespread gene duplication
-
Sanderson, M. J., and McMahon, M. M. 2007. Inferring angiosperm phylogeny from EST data with widespread gene duplication. BMC Evol. Biol. 7:83.
-
(2007)
BMC Evol. Biol
, vol.7
, pp. 83
-
-
Sanderson, M.J.1
McMahon, M.M.2
-
134
-
-
0036062110
-
Utility of low-copy nuclear gene sequences in plant phylogenetics
-
Sang, T. 2002. Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit. Rev. Biochem. Mole. Biol. 37: 121-147.
-
(2002)
Crit. Rev. Biochem. Mole. Biol
, vol.37
, pp. 121-147
-
-
Sang, T.1
-
135
-
-
0016800090
-
A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
-
Sanger, F., and Coulson, A. R. 1975. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J Mol Biol. 94: 441-448.
-
(1975)
J Mol Biol
, vol.94
, pp. 441-448
-
-
Sanger, F.1
Coulson, A.R.2
-
137
-
-
0034350426
-
Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences
-
Savolainen, V., Chase, M. W. Hoot, S. B., Morton, C. M., Soltis, D. E., Bayer, C., Fay, M. F., de Bruijn, A. Y., Sullivan, S., and Qiu, Y. L. 2000. Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Syst. Biol. 49: 306-362.
-
(2000)
Syst. Biol
, vol.49
, pp. 306-362
-
-
Savolainen, V.1
Chase, M.W.2
Hoot, S.B.3
Morton, C.M.4
Soltis, D.E.5
Bayer, C.6
Fay, M.F.7
de Bruijn, A.Y.8
Sullivan, S.9
Qiu, Y.L.10
-
138
-
-
1842431898
-
Ferns diversified in the shadow of the angiosperms
-
Schneider H., Schuettpelz, E., Pryer, K. M., Cranfill, R., Magallón, S., and Lupi, R. 2004. Ferns diversified in the shadow of the angiosperms. Nature 428: 553-557.
-
(2004)
Nature
, vol.428
, pp. 553-557
-
-
Schneider, H.1
Schuettpelz, E.2
Pryer, K.M.3
Cranfill, R.4
Magallón, S.5
Lupi, R.6
-
139
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
Schuster, S. C. 2008. Next-generation sequencing transforms today's biology. Nat. Methods 5: 16-8.
-
(2008)
Nat. Methods
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
140
-
-
0034808850
-
Flammability and serotiny as strategies: Correlated evolution in pines
-
Schwilk, D. W., and Ackerley, D. D. 2001. Flammability and serotiny as strategies: correlated evolution in pines. Oikos 94: 326-336.
-
(2001)
Oikos
, vol.94
, pp. 326-336
-
-
Schwilk, D.W.1
Ackerley, D.D.2
-
141
-
-
0031296691
-
Inferring species trees from gene trees: A phylogenetic analysis of the elapidae (serpentes) based on the amino acid sequences of venom proteins
-
Slowinski, J. B., Knight, A., and Rooney, A. P. 1997. Inferring species trees from gene trees: A phylogenetic analysis of the elapidae (serpentes) based on the amino acid sequences of venom proteins. Mol. Phylogenet. Evol. 8: 349-362.
-
(1997)
Mol. Phylogenet. Evol
, vol.8
, pp. 349-362
-
-
Slowinski, J.B.1
Knight, A.2
Rooney, A.P.3
-
142
-
-
45249094183
-
The Amborella genome: An evolutionary reference for plant biology
-
Soltis, D. E., Albert, V. A., Leebens-Mack, J., Palmer, J. D., Wing, R. A., dePamphilis, C. W., Ma, H., Carlson, J. E., Altman, N., Kim, S., Wall, P. K., Zuccolo, A., and Soltis, P. S. 2008. The Amborella genome: an evolutionary reference for plant biology. Genome Biol. 9: 402.
-
(2008)
Genome Biol
, vol.9
, pp. 402
-
-
Soltis, D.E.1
Albert, V.A.2
Leebens-Mack, J.3
Palmer, J.D.4
Wing, R.A.5
dePamphilis, C.W.6
Ma, H.7
Carlson, J.E.8
Altman, N.9
Kim, S.10
Wall, P.K.11
Zuccolo, A.12
Soltis, P.S.13
-
143
-
-
33847240958
-
A 567-taxon data set for angiosperms: The challenges posed by Bayesian analyses of large data sets
-
Soltis, D. E., Gitzendanner, M. A., and Soltis, P. S. 2007. A 567-taxon data set for angiosperms: the challenges posed by Bayesian analyses of large data sets. Int. J. Plant Sci. 168: 137-157.
-
(2007)
Int. J. Plant Sci
, vol.168
, pp. 137-157
-
-
Soltis, D.E.1
Gitzendanner, M.A.2
Soltis, P.S.3
-
144
-
-
0842332041
-
Gunnerales are sister to other core eudicots: Implications for the evolution of pentamery
-
Soltis, D. E., Senters, A. E., Zanis, M., Kim, S., Thompson, J. D., Soltis, P. S., Ronse Decraene, L. P., Endress, P. K., and Farris, J. S. 2003. Gunnerales are sister to other core eudicots: implications for the evolution of pentamery. Amer. J. Bot. 90: 461-470.
-
(2003)
Amer. J. Bot
, vol.90
, pp. 461-470
-
-
Soltis, D.E.1
Senters, A.E.2
Zanis, M.3
Kim, S.4
Thompson, J.D.5
Soltis, P.S.6
Ronse Decraene, L.P.7
Endress, P.K.8
Farris, J.S.9
-
146
-
-
0033838109
-
Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL and atpB sequences
-
Soltis, D. E., Soltis, P. S., Chase, M. W., Mort, M., Albach, D., Zanis, M., Savolainen, V., Hahn, W., Hoot, S., Fay, M., Axtell, M., Swensen, S., Nixon, K., and Farris, J. 2000. Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL and atpB sequences. Bot. J. Linnean Soc. 133: 381-461.
-
(2000)
Bot. J. Linnean Soc
, vol.133
, pp. 381-461
-
-
Soltis, D.E.1
Soltis, P.S.2
Chase, M.W.3
Mort, M.4
Albach, D.5
Zanis, M.6
Savolainen, V.7
Hahn, W.8
Hoot, S.9
Fay, M.10
Axtell, M.11
Swensen, S.12
Nixon, K.13
Farris, J.14
-
147
-
-
0025303633
-
rbcL sequence divergence and phylogenetic relationships in Saxifragaceae sensu lato
-
Soltis, D. E., Soltis, P. S., Clegg, M. T., and Durbin, M. 1990. rbcL sequence divergence and phylogenetic relationships in Saxifragaceae sensu lato. Proc. Nat. Acad. Sci. U.S.A. 87: 4640-4644.
-
(1990)
Proc. Nat. Acad. Sci. U.S.A
, vol.87
, pp. 4640-4644
-
-
Soltis, D.E.1
Soltis, P.S.2
Clegg, M.T.3
Durbin, M.4
-
148
-
-
0003540468
-
-
Kluwer Academic Press, Boston MA
-
Soltis, D. E., Soltis, P. S., and Doyle, J. J. 1998. Molecular Systematics ofPlants II: DNA Sequencing. Kluwer Academic Press, Boston MA.
-
(1998)
Molecular Systematics ofPlants II: DNA Sequencing
-
-
Soltis, D.E.1
Soltis, P.S.2
Doyle, J.J.3
-
149
-
-
21044460017
-
-
Sinauer Associates, Sunderland, MA. 370 pp
-
Soltis, D. E., Soltis, P. S., Endress, P. K., and Chase, M. W. 2005. Phylogeny and Evolution ofAngiosperms. Sinauer Associates, Sunderland, MA. 370 pp.
-
(2005)
Phylogeny and Evolution ofAngiosperms
-
-
Soltis, D.E.1
Soltis, P.S.2
Endress, P.K.3
Chase, M.W.4
-
150
-
-
0003521279
-
-
Chapman and Hall, London
-
Soltis, P. S., Soltis, D. E., andDoyle, J. J. 1992. MolecularSystematicsofPlants. Chapman and Hall, London.
-
(1992)
MolecularSystematicsofPlants
-
-
Soltis, P.S.1
Soltis, D.E.2
andDoyle, J.J.3
-
151
-
-
0033604619
-
Angiosperm phylogeny inferred from multiple genes as a research tool for comparative biology
-
Soltis, P. S., Soltis, D. E., and Chase, M. W. 1999. Angiosperm phylogeny inferred from multiple genes as a research tool for comparative biology. Nature 402: 402-404.
-
(1999)
Nature
, vol.402
, pp. 402-404
-
-
Soltis, P.S.1
Soltis, D.E.2
Chase, M.W.3
-
152
-
-
50849126804
-
-
Srivatsan, A., Han, Y., Peng, J., Tehranchi, A. K., Gibbs, R., Wang, J. D., and Chen, R. 2008. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet 4: e1000139.
-
Srivatsan, A., Han, Y., Peng, J., Tehranchi, A. K., Gibbs, R., Wang, J. D., and Chen, R. 2008. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet 4: e1000139.
-
-
-
-
153
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phyloge- netic analyses with thousands of taxa and mixed models
-
Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phyloge- netic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
154
-
-
41849131023
-
Maximum likelihood supertrees
-
Steel, M., and Rodrigo, A. 2008. Maximum likelihood supertrees. Syst. Biol. 57: 243-250.
-
(2008)
Syst. Biol
, vol.57
, pp. 243-250
-
-
Steel, M.1
Rodrigo, A.2
-
155
-
-
0032573569
-
In search of the first flower: A Jurassic angiosperm, Archaefructus, from northeast China. I
-
Sun, G., Dilcher, D. L., Zheng, S., and Zhou, Z. 1998. In search of the first flower: A Jurassic angiosperm, Archaefructus, from northeast China. I. Science 282: 1692-1695.
-
(1998)
Science
, vol.282
, pp. 1692-1695
-
-
Sun, G.1
Dilcher, D.L.2
Zheng, S.3
Zhou, Z.4
-
156
-
-
65349142145
-
-
Sun, G., Li, Q., Dilcher, D. L., Zheng, S., Nixon, K. C, and Wang, X. 2002.
-
(2002)
-
-
Sun, G.1
Li, Q.2
Dilcher, D.L.3
Zheng, S.4
Nixon, K.C.5
Wang, X.6
-
157
-
-
0037012877
-
-
Archaefructaceae, a new basal angiosperm family. Science 296: 899-904.
-
Archaefructaceae, a new basal angiosperm family. Science 296: 899-904.
-
-
-
-
158
-
-
0017872026
-
Pollination by lemurs and marsupials: An archaic coevolutionary system
-
Sussman, R. W., and Raven, P. H. 1978. Pollination by lemurs and marsupials: An archaic coevolutionary system. Science 200: 731-736.
-
(1978)
Science
, vol.200
, pp. 731-736
-
-
Sussman, R.W.1
Raven, P.H.2
-
159
-
-
34250775100
-
Ecological and evolutionary determinants of a key plant functional trait: Wood density and its community- wide variation across latitude and elevation
-
Swenson, N. G., and Enquist, B. J. 2007. Ecological and evolutionary determinants of a key plant functional trait: wood density and its community- wide variation across latitude and elevation. Amer. J. Bot. 94: 451-459.
-
(2007)
Amer. J. Bot
, vol.94
, pp. 451-459
-
-
Swenson, N.G.1
Enquist, B.J.2
-
161
-
-
65349196360
-
-
other methods, Version 4.0 beta 10. Sinauer Assoc, Sunderland, MA
-
other methods). Version 4.0 beta 10. Sinauer Assoc., Sunderland, MA.
-
-
-
-
162
-
-
0036803223
-
Divergence time and evolutionary rate estimation with multilocus data
-
Thorne, J. L., and Kishino, H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51: 689-702.
-
(2002)
Syst. Biol
, vol.51
, pp. 689-702
-
-
Thorne, J.L.1
Kishino, H.2
-
163
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne, J. L., Kishino, H., and Painter, I. S. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15: 1647-1657.
-
(1998)
Mol. Biol. Evol
, vol.15
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
164
-
-
11244289722
-
Vertebrate dispersal of seed plants through time
-
Tiffney, B. H. 2004. Vertebrate dispersal of seed plants through time. Ann. Rev. Ecol. Evol. Syst. 35: 1-29.
-
(2004)
Ann. Rev. Ecol. Evol. Syst
, vol.35
, pp. 1-29
-
-
Tiffney, B.H.1
-
165
-
-
65349173212
-
-
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., et al. 2001.
-
(2001)
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
166
-
-
0035895505
-
-
The sequence of the human genome. Science 291: 1304-1351.
-
The sequence of the human genome. Science 291: 1304-1351.
-
-
-
-
167
-
-
65349173815
-
Rosid radiation and the rapid rise of angiosperm-dominated forests
-
in press
-
Wang, H., Moore, M. J., Soltis, P. S., Bell, C. D., Brockington, S. F., Alexandre, R., Davis, C. C., Latvis, M., Manchester, S. R., and Soltis, D. E. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proc. Natl. Acad. Sci. USA. (in press).
-
Proc. Natl. Acad. Sci. USA
-
-
Wang, H.1
Moore, M.J.2
Soltis, P.S.3
Bell, C.D.4
Brockington, S.F.5
Alexandre, R.6
Davis, C.C.7
Latvis, M.8
Manchester, S.R.9
Soltis, D.E.10
-
168
-
-
14844350168
-
Phylomatic: Tree assembly for applied phylogenetics
-
Webb, C. O., and Donoghue, M. J. 2004. Phylomatic: Tree assembly for applied phylogenetics. Mol. Ecol. Notes 5: 181-183.
-
(2004)
Mol. Ecol. Notes
, vol.5
, pp. 181-183
-
-
Webb, C.O.1
Donoghue, M.J.2
-
169
-
-
46249126320
-
DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
-
Wehe, A., Bansal, M. S., Burleigh, J. G., and Eulenstein, O. 2008. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics 24: 1540-1541.
-
(2008)
Bioinformatics
, vol.24
, pp. 1540-1541
-
-
Wehe, A.1
Bansal, M.S.2
Burleigh, J.G.3
Eulenstein, O.4
-
170
-
-
0000162362
-
Phylogenetic incongruence: Window into genome history and moleclar evolution
-
D. E. Soltis, P. S. Soltis, and J. J. Doyle, editors, Kluwer Academic Publishers, Boston
-
Wendel, J. F., and Doyle, J. J. 1998. Phylogenetic incongruence: window into genome history and moleclar evolution. Pages 265-97. In: D. E. Soltis, P. S. Soltis, and J. J. Doyle, editors. Molecular Systematics ofPlants II: DNA Sequencing. Kluwer Academic Publishers, Boston.
-
(1998)
Molecular Systematics ofPlants II: DNA Sequencing
, pp. 265-297
-
-
Wendel, J.F.1
Doyle, J.J.2
-
171
-
-
0032225748
-
Does adding characters with missing data increase or decrease phylogenetic accuracy?
-
Wiens, J. J. 1998. Does adding characters with missing data increase or decrease phylogenetic accuracy? Syst. Biol. 47: 625-640.
-
(1998)
Syst. Biol
, vol.47
, pp. 625-640
-
-
Wiens, J.J.1
-
172
-
-
0042905752
-
Missing data, incomplete taxa, and phylogenetic accuracy
-
Wiens, J. J. 2003. Missing data, incomplete taxa, and phylogenetic accuracy. Syst. Biol. 52: 528-538.
-
(2003)
Syst. Biol
, vol.52
, pp. 528-538
-
-
Wiens, J.J.1
-
173
-
-
30344464074
-
Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?
-
Wiens, J. J. 2005. Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Syst. Biol. 54: 731-742.
-
(2005)
Syst. Biol
, vol.54
, pp. 731-742
-
-
Wiens, J.J.1
-
174
-
-
31344471014
-
Missing data and the design of phylogenetic analyses
-
Wiens, J. J. 2006. Missing data and the design of phylogenetic analyses. J. Biomed. Inform. 39: 34-42.
-
(2006)
J. Biomed. Inform
, vol.39
, pp. 34-42
-
-
Wiens, J.J.1
-
175
-
-
0035823864
-
Evolution of the an- giosperms: Calibrating the family tree
-
Wikström, N., Savolainen, V., and Chase, M. W. 2001. Evolution of the an- giosperms: calibrating the family tree. Proc. Royal Soc. Lond., B. 268: 2211-2220.
-
(2001)
Proc. Royal Soc. Lond., B
, vol.268
, pp. 2211-2220
-
-
Wikström, N.1
Savolainen, V.2
Chase, M.W.3
-
176
-
-
22844442070
-
The shape ofsupertrees to come: Tree shape related properties offourteen supertree methods
-
Wilkinson, M., Cotton, J. A., Creevey, C., Eulenstein, O.. Harris, S. R., Lapointe, F.-J., Levasseur, C., McInerney, J. O., Pisani, D., and Thorley, J. L. 2005. The shape ofsupertrees to come: tree shape related properties offourteen supertree methods. Syst. Biol. 54: 4 19-432.
-
(2005)
Syst. Biol
, vol.54
, Issue.4
, pp. 19-432
-
-
Wilkinson, M.1
Cotton, J.A.2
Creevey, C.3
Eulenstein, O.4
Harris, S.R.5
Lapointe, F.-J.6
Levasseur, C.7
McInerney, J.O.8
Pisani, D.9
Thorley, J.L.10
-
177
-
-
0001858111
-
Contributions of PCR-based methods it plant systematics and evolutionary biology
-
Kluwer Academic Press, Boston
-
Wolfe, A. D., and Liston, A. 1998. Contributions of PCR-based methods it plant systematics and evolutionary biology. pp. 1-42. In: Molecular Systematics ofPlants II: DNA Sequencing. Kluwer Academic Press, Boston.
-
(1998)
Molecular Systematics ofPlants II: DNA Sequencing
, pp. 1-42
-
-
Wolfe, A.D.1
Liston, A.2
-
178
-
-
34548392804
-
Relationships among ecologically important dimensions of plant trait variation in seven neotropical forests
-
Wright, I. J., Ackerly, D. D., Bongers, F., Harms, K. E., Ibarra-Manriquez, G., Martinez-Ramos, M., Mazer, S. J., Muller-Landau, H. C., Paz, H., Pitman, N. C., Poorter, L., Silman, M. R., Vriesendorp, C. F., Webb, C. O., Westoby, M., and Wright, S. J. 2007. Relationships among ecologically important dimensions of plant trait variation in seven neotropical forests. Ann. Bot. 99: 1003-1015.
-
(2007)
Ann. Bot
, vol.99
, pp. 1003-1015
-
-
Wright, I.J.1
Ackerly, D.D.2
Bongers, F.3
Harms, K.E.4
Ibarra-Manriquez, G.5
Martinez-Ramos, M.6
Mazer, S.J.7
Muller-Landau, H.C.8
Paz, H.9
Pitman, N.C.10
Poorter, L.11
Silman, M.R.12
Vriesendorp, C.F.13
Webb, C.O.14
Westoby, M.15
Wright, S.J.16
-
179
-
-
18144430654
-
Identifying optimal incomplete phylogenetic data sets from sequence databases
-
Yan, C. H., Burleigh, J. G., and Eulenstein, O. 2005. Identifying optimal incomplete phylogenetic data sets from sequence databases. Mol. Phylogenet. Evol. 35: 528-535.
-
(2005)
Mol. Phylogenet. Evol
, vol.35
, pp. 528-535
-
-
Yan, C.H.1
Burleigh, J.G.2
Eulenstein, O.3
-
180
-
-
0001354070
-
Evolution of higher-plant chloroplast DNA-encoded genes: Implications for structure-function and phylogenetic studies
-
Zurawski, G., and Clegg, M. T. 1987. Evolution of higher-plant chloroplast DNA-encoded genes: Implications for structure-function and phylogenetic studies. Annu. Rev. Plant Physiol. 38: 391-418.
-
(1987)
Annu. Rev. Plant Physiol
, vol.38
, pp. 391-418
-
-
Zurawski, G.1
Clegg, M.T.2
-
181
-
-
0001336097
-
rbcL sequence data and phylogenetic reconstruction in seed plants: Foreword
-
Zurawski, G., and Clegg, M. T. 1993. rbcL sequence data and phylogenetic reconstruction in seed plants: foreword. Ann. Missouri Bot. Garden 80: 523-525.
-
(1993)
Ann. Missouri Bot. Garden
, vol.80
, pp. 523-525
-
-
Zurawski, G.1
Clegg, M.T.2
|