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Volumn 28, Issue 1-2, 2009, Pages 1-15

Molecular markers and concepts of plant evolutionary relationships: Progress, promise, and future prospects

Author keywords

Molecular systematics; Phylogenomics; Phylogeny; Rapid radiation; Supermatrices

Indexed keywords

MAGNOLIOPHYTA;

EID: 65349173526     PISSN: 07352689     EISSN: 15497836     Source Type: Journal    
DOI: 10.1080/07352680802665297     Document Type: Article
Times cited : (21)

References (181)
  • 1
    • 0000082702 scopus 로고
    • Biochemical systematics
    • Alston, R. E. 1967. Biochemical systematics. Evol. Biol. 1: 197-385.
    • (1967) Evol. Biol , vol.1 , pp. 197-385
    • Alston, R.E.1
  • 4
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 5
    • 2342651581 scopus 로고    scopus 로고
    • Bayesian gene/species tree reconciliation and orthology analysis using MCMC
    • Arvestad, L., Berglund, A.-C., Lagergren, J., and Sennblad, B. 2003. Bayesian gene/species tree reconciliation and orthology analysis using MCMC. Bioin-formatics 19: 17-115.
    • (2003) Bioin-formatics , vol.19 , pp. 17-115
    • Arvestad, L.1    Berglund, A.-C.2    Lagergren, J.3    Sennblad, B.4
  • 6
    • 2442562450 scopus 로고    scopus 로고
    • Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution
    • Arvestad, L., Berglund, A.-C., Lagergren, J., and Sennblad, B. 2004. Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB 2004 326-335.
    • (2004) RECOMB 2004 , pp. 326-335
    • Arvestad, L.1    Berglund, A.-C.2    Lagergren, J.3    Sennblad, B.4
  • 8
    • 33751114437 scopus 로고    scopus 로고
    • Computational grand challenges in assembling the tree of life
    • Tzeng, C.-W, Ed, Elsevier, New York
    • Bader, D. A., Roshan, U., and Stamatakis, A. 2006. Computational grand challenges in assembling the tree of life. In: Advances in Computers, Vol. 68. pp. 128-170. Tzeng, C.-W., Ed., Elsevier, New York.
    • (2006) Advances in Computers , vol.68 , pp. 128-170
    • Bader, D.A.1    Roshan, U.2    Stamatakis, A.3
  • 9
    • 34547428923 scopus 로고    scopus 로고
    • Heuristics for the gene-duplication problem: An W(N) speed-up for the local heuristic
    • RECOMB 2007
    • Bansal, M., Burleigh, J. G., Eulenstein, O., and Wehe, A. 2007. Heuristics for the gene-duplication problem: an W(N) speed-up for the local heuristic. RECOMB 2007, LNCS 4453: 238-252.
    • (2007) LNCS , vol.4453 , pp. 238-252
    • Bansal, M.1    Burleigh, J.G.2    Eulenstein, O.3    Wehe, A.4
  • 10
    • 49949102302 scopus 로고    scopus 로고
    • The gene-duplication problem: Near-linear time algorithms for NNI based local searches
    • ISBRA 2008
    • Bansal, M. S., and Eulenstein, O. 2008. The gene-duplication problem: near-linear time algorithms for NNI based local searches. ISBRA 2008, LNCS 4983: 14-25.
    • (2008) LNCS , vol.4983 , pp. 14-25
    • Bansal, M.S.1    Eulenstein, O.2
  • 11
    • 37249081512 scopus 로고    scopus 로고
    • 2/log n)speed-up of TBR heuristics for the gene-duplication problem
    • 4645
    • 2/log n)speed-up of TBR heuristics for the gene-duplication problem. WABI 2007, LNCS 4645: 124-135.
    • (2007) LNCS , vol.WABI 2007 , pp. 124-135
    • Bansal, M.S.1    Eulenstein, O.2
  • 12
    • 0032766676 scopus 로고    scopus 로고
    • Interspecific hybrid ancestry of a plant adaptive radiation: Allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications
    • Barrier, M., Baldwin, B. G., Robichaux, R. H., and Purugganan, M. D. 1999. Interspecific hybrid ancestry of a plant adaptive radiation: Allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications. Mol. Biol. Evol. 16: 1105-1113.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1105-1113
    • Barrier, M.1    Baldwin, B.G.2    Robichaux, R.H.3    Purugganan, M.D.4
  • 13
    • 0002844544 scopus 로고
    • Combining trees as a way of combining data sets for phy-logenetic inference, and the desirability of combining gene trees
    • Baum, B. R. 1992. Combining trees as a way of combining data sets for phy-logenetic inference, and the desirability of combining gene trees. Taxon. 41: 3-10.
    • (1992) Taxon , vol.41 , pp. 3-10
    • Baum, B.R.1
  • 14
    • 33845908745 scopus 로고    scopus 로고
    • Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors?
    • Baurain, D., Brinkmann, H., and Philippe, H.. 2007. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? Mol. Biol. Evol. 24: 6-9.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 6-9
    • Baurain, D.1    Brinkmann, H.2    Philippe, H.3
  • 16
    • 21044456515 scopus 로고    scopus 로고
    • The age of the angiosperms: A molecular time-scale without a clock
    • Bell, C. D., Soltis, D. E., and Soltis, P. S. 2005. The age of the angiosperms: A molecular time-scale without a clock. Evolution 59: 1245-1258.
    • (2005) Evolution , vol.59 , pp. 1245-1258
    • Bell, C.D.1    Soltis, D.E.2    Soltis, P.S.3
  • 17
    • 33744973813 scopus 로고    scopus 로고
    • Fast computation of supertrees for compatible phylogenies with nested taxa
    • Berry, V., and Semple, C. 2006. Fast computation of supertrees for compatible phylogenies with nested taxa. Syst. Biol. 55: 270-288.
    • (2006) Syst. Biol , vol.55 , pp. 270-288
    • Berry, V.1    Semple, C.2
  • 18
  • 21
    • 0035527411 scopus 로고    scopus 로고
    • Assessment of the accuracy of matrix representation with parsimony analysis supertree construction
    • Bininda-Emonds, O. R. P., and Sanderson, M. J. 2001. Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. Syst. Biol. 50: 565-579.
    • (2001) Syst. Biol , vol.50 , pp. 565-579
    • Bininda-Emonds, O.R.P.1    Sanderson, M.J.2
  • 24
    • 0002133377 scopus 로고    scopus 로고
    • Evidence for the earliest stage of angiosperm pollen evolution: A paleoequatorial section from Israel
    • D. W. Taylor and L. J. Hickey [eds, Chapman and Hall, New York
    • Brenner, G. J. 1996. Evidence for the earliest stage of angiosperm pollen evolution: a paleoequatorial section from Israel. In: D. W. Taylor and L. J. Hickey [eds.], Flowering Plant Origin, Evolution, and Phylogeny, 91-115. Chapman and Hall, New York.
    • (1996) Flowering Plant Origin, Evolution, and Phylogeny , pp. 91-115
    • Brenner, G.J.1
  • 25
    • 54549085607 scopus 로고    scopus 로고
    • Parsimony via consensus
    • Bruen, T. C., and Bryant, D. 2008. Parsimony via consensus. Syst. Biol. 57: 251-256.
    • (2008) Syst. Biol , vol.57 , pp. 251-256
    • Bruen, T.C.1    Bryant, D.2
  • 26
    • 65349083699 scopus 로고    scopus 로고
    • Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis ofangiosperms
    • In press
    • Burleigh, J. G., Hilu, K. W., and Soltis, D. E. In press. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis ofangiosperms. BMC Evol. Biol.
    • BMC Evol. Biol
    • Burleigh, J.G.1    Hilu, K.W.2    Soltis, D.E.3
  • 27
    • 65349128389 scopus 로고    scopus 로고
    • Burleigh, J. G., Bansal, M. S., Eulenstein, O., Hartmann, S., Wehe, A., and Vision, T. J. In review. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 discordant gene trees.
    • Burleigh, J. G., Bansal, M. S., Eulenstein, O., Hartmann, S., Wehe, A., and Vision, T. J. In review. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 discordant gene trees.
  • 29
    • 33845473904 scopus 로고    scopus 로고
    • Regional and phylogenetic variation variation of wood density across 2456 neotropical tree species
    • Chave, J., Muller-Landau, H. C., Baker, T. R., Easdale, T. A., Ter Steege, H., and Webb, C. O. 2006. Regional and phylogenetic variation variation of wood density across 2456 neotropical tree species. Ecol. Appl. 16: 2356-2367.
    • (2006) Ecol. Appl , vol.16 , pp. 2356-2367
    • Chave, J.1    Muller-Landau, H.C.2    Baker, T.R.3    Easdale, T.A.4    Ter Steege, H.5    Webb, C.O.6
  • 31
  • 32
    • 84879883081 scopus 로고    scopus 로고
    • New oxygen isotope evidence for long-term Cretaceous climatic change in the Southern Hemisphere
    • Clark L. J., and Jenkyns, H. C. 1999. New oxygen isotope evidence for long-term Cretaceous climatic change in the Southern Hemisphere. Geology 27:699-702.
    • (1999) Geology , vol.27 , pp. 699-702
    • Clark, L.J.1    Jenkyns, H.C.2
  • 33
    • 0037036630 scopus 로고    scopus 로고
    • Going nuclear: Gene family evolution and vertebrate phylogeny reconciled
    • Cotton, J. A., and Page, R. D. M. 2002. Going nuclear: gene family evolution and vertebrate phylogeny reconciled. Proc. Roy. Soc. Lond. B Biol. Sci. 269: 1555-1561.
    • (2002) Proc. Roy. Soc. Lond. B Biol. Sci , vol.269 , pp. 1555-1561
    • Cotton, J.A.1    Page, R.D.M.2
  • 34
    • 34548566074 scopus 로고    scopus 로고
    • Majority-rule supertrees
    • Cotton, J. A., and Wilkinson, M. 2007. Majority-rule supertrees. Syst. Biol. 56: 445-452.
    • (2007) Syst. Biol , vol.56 , pp. 445-452
    • Cotton, J.A.1    Wilkinson, M.2
  • 35
    • 0028973842 scopus 로고
    • The origin and early diversification of angiosperms
    • Crane, P.R., Friis, E. M., and Pedersen, K. R. 1995. The origin and early diversification of angiosperms. Nature 374: 27-33.
    • (1995) Nature , vol.374 , pp. 27-33
    • Crane, P.R.1    Friis, E.M.2    Pedersen, K.R.3
  • 37
    • 13844250623 scopus 로고    scopus 로고
    • Clann: Investigating phylogenetic information through supertree analyses
    • Creevey, C. J., and McInerney, J. O. 2005. Clann: investigating phylogenetic information through supertree analyses. Bioinformatics 21: 390-392.
    • (2005) Bioinformatics , vol.21 , pp. 390-392
    • Creevey, C.J.1    McInerney, J.O.2
  • 38
    • 34447341925 scopus 로고    scopus 로고
    • SDM: A fast distance-based approach for (super) tree building in phylogenomics
    • Criscuolo, A., Berry, V., Douzery, E. J. P., and Gascuel, O. 2006. SDM: a fast distance-based approach for (super) tree building in phylogenomics. Syst. Biol. 55: 740-755.
    • (2006) Syst. Biol , vol.55 , pp. 740-755
    • Criscuolo, A.1    Berry, V.2    Douzery, E.J.P.3    Gascuel, O.4
  • 39
    • 56149096455 scopus 로고    scopus 로고
    • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    • doi:10.1093/nar/gkn502
    • Cronn, R., Liston, A., Parks, M., Gernandt, D. S., Shen, R., and Mockler, T. 2008. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res. doi:10.1093/nar/gkn502.
    • (2008) Nucleic Acids Res
    • Cronn, R.1    Liston, A.2    Parks, M.3    Gernandt, D.S.4    Shen, R.5    Mockler, T.6
  • 41
    • 33646839230 scopus 로고    scopus 로고
    • Supertree algorithms for nested taxa
    • Bininda-Emonds, O. R. P, Ed, Kluwer Academic Publishers, Dordrecht, Netherlands
    • Daniel, P., and Semple, C. 2004. Supertree algorithms for nested taxa. In: Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life. pp. 151-171. Bininda-Emonds, O. R. P., Ed., Kluwer Academic Publishers, Dordrecht, Netherlands.
    • (2004) Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life , pp. 151-171
    • Daniel, P.1    Semple, C.2
  • 44
    • 34548057478 scopus 로고    scopus 로고
    • Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests
    • Davis, C. C., Webb, C. O., Wurdack, K. J., Jaramillo, C. A., and Donoghue, M. J. 2005. Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests. Am. Nat. 165: E36-E65.
    • (2005) Am. Nat , vol.165
    • Davis, C.C.1    Webb, C.O.2    Wurdack, K.J.3    Jaramillo, C.A.4    Donoghue, M.J.5
  • 46
    • 33845627286 scopus 로고    scopus 로고
    • The supermatrix approach to systematics
    • De Queiroz, A., and Gatesy, J. 2007. The supermatrix approach to systematics. Trends Ecol. Evol. 22: 34-41.
    • (2007) Trends Ecol. Evol , vol.22 , pp. 34-41
    • De Queiroz, A.1    Gatesy, J.2
  • 47
    • 0000827553 scopus 로고
    • Evolutionary analysis of the large subunit of carboxylase (rbcL) nucleotide sequence among the grasses (Gramineae)
    • Doebley, J., Durbin, M., Golenberg, E. M., Clegg, M. T., and Ma, D. P. 1990. Evolutionary analysis of the large subunit of carboxylase (rbcL) nucleotide sequence among the grasses (Gramineae) Evolution 44: 1097-1108.
    • (1990) Evolution , vol.44 , pp. 1097-1108
    • Doebley, J.1    Durbin, M.2    Golenberg, E.M.3    Clegg, M.T.4    Ma, D.P.5
  • 48
    • 0024927549 scopus 로고
    • Phylogenies and the analysis of evolutionary sequences, with examples from plants
    • Donoghue, M. J. 1989. Phylogenies and the analysis of evolutionary sequences, with examples from plants. Evolution 43: 1137-1156.
    • (1989) Evolution , vol.43 , pp. 1137-1156
    • Donoghue, M.J.1
  • 49
    • 0031926032 scopus 로고    scopus 로고
    • Phylogeny and the evolution of flower symmetry in the Asteridae
    • Donoghue, M. J., Ree, R. H., and Baum, D. A. 1998. Phylogeny and the evolution of flower symmetry in the Asteridae. Trends Plant Sci. 3: 311-317.
    • (1998) Trends Plant Sci , vol.3 , pp. 311-317
    • Donoghue, M.J.1    Ree, R.H.2    Baum, D.A.3
  • 50
    • 0038215981 scopus 로고    scopus 로고
    • Significance of molecular phylogenetic analyses for paleobotanical investigations on the origin of angiosperms
    • Doyle, J. A. 2001. Significance of molecular phylogenetic analyses for paleobotanical investigations on the origin of angiosperms. Palaeobotanist 50: 167-188.
    • (2001) Palaeobotanist , vol.50 , pp. 167-188
    • Doyle, J.A.1
  • 54
    • 34347256397 scopus 로고    scopus 로고
    • High-resolution species trees without concatenation
    • Edwards, S.V., Liu, L., and Pearl, D.K. 2007. High-resolution species trees without concatenation. Proc. Natl. Acad. Sci. USA 104: 5936-5941.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 5936-5941
    • Edwards, S.V.1    Liu, L.2    Pearl, D.K.3
  • 57
    • 0032795196 scopus 로고    scopus 로고
    • Early angiosperm diversification: The diversity of pollen associated with angiosperm reproductive structures in early Cretaceous floras from Portugal
    • Friis, E. M., Crane, P. R., and Pedersen, K. R. 1999. Early angiosperm diversification: the diversity of pollen associated with angiosperm reproductive structures in early Cretaceous floras from Portugal. Annals Missouri Botanical Garden 86: 259-296.
    • (1999) Annals Missouri Botanical Garden , vol.86 , pp. 259-296
    • Friis, E.M.1    Crane, P.R.2    Pedersen, K.R.3
  • 58
    • 0033680066 scopus 로고    scopus 로고
    • Reproductive structure and organization of basal angiosperms from the early Cretaceous (Barremian or Aptian) of western Portugal
    • Friis, E. M., Crane, P. R., and Pedersen, K. R. 2000. Reproductive structure and organization of basal angiosperms from the early Cretaceous (Barremian or Aptian) of western Portugal. International Journal ofPlant Sciences 161: S169-S182.
    • (2000) International Journal ofPlant Sciences , vol.161
    • Friis, E.M.1    Crane, P.R.2    Pedersen, K.R.3
  • 59
    • 0035868707 scopus 로고    scopus 로고
    • Fossil evidence of waterlilies (Nymphaeales) in the Early Cretaceous
    • Friis, E. M., Crane, P. R., and Pedersen, K. R. 2001. Fossil evidence of waterlilies (Nymphaeales) in the Early Cretaceous. Nature 410: 357-360.
    • (2001) Nature , vol.410 , pp. 357-360
    • Friis, E.M.1    Crane, P.R.2    Pedersen, K.R.3
  • 61
    • 11844299096 scopus 로고    scopus 로고
    • When earth started blooming: Insights from the fossil record
    • Friis, E. M., Pedersen, K. R., and Crane, P. R. 2005. When earth started blooming: insights from the fossil record. Curr Opin Plant Biol 8: 5-12.
    • (2005) Curr Opin Plant Biol , vol.8 , pp. 5-12
    • Friis, E.M.1    Pedersen, K.R.2    Crane, P.R.3
  • 62
    • 0034042674 scopus 로고    scopus 로고
    • The mostly male theory of flower evolutionary origins: From genes to fossils
    • Frohlich, M. W., and Parker, D. S. 2000. The mostly male theory of flower evolutionary origins: from genes to fossils. Syst. Bot. 25: 155-170.
    • (2000) Syst. Bot , vol.25 , pp. 155-170
    • Frohlich, M.W.1    Parker, D.S.2
  • 63
    • 22844438847 scopus 로고    scopus 로고
    • Hidden likelihood support in genomic data: Can forty-five wrongs make a right?
    • Gatesy, J., and Baker, R. H. 2005. Hidden likelihood support in genomic data: can forty-five wrongs make a right? Syst. Biol. 54: 483-492.
    • (2005) Syst. Biol , vol.54 , pp. 483-492
    • Gatesy, J.1    Baker, R.H.2
  • 64
    • 2442449251 scopus 로고    scopus 로고
    • Inconsistencies in arguments for the supertree approach: Supermatrices versus supertrees of Crocodylia
    • Gatesy, J., Baker, R. H., and Hayashi, C. 2004. Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. Syst. Biol. 53: 342-355.
    • (2004) Syst. Biol , vol.53 , pp. 342-355
    • Gatesy, J.1    Baker, R.H.2    Hayashi, C.3
  • 65
    • 0030983892 scopus 로고    scopus 로고
    • Launching microsatellites: A review of mutation processes and methods of phylogenetic inference
    • Goldstein, D. G., and Pollock, D. D. 1997. Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. J. Hered. 88: 335-342.
    • (1997) J. Hered , vol.88 , pp. 335-342
    • Goldstein, D.G.1    Pollock, D.D.2
  • 66
    • 27544472307 scopus 로고    scopus 로고
    • Minority-rule supertrees? MRP, compatibility, and minimum flip may display the least frequent groups
    • Goloboff, P. A. 2005. Minority-rule supertrees? MRP, compatibility, and minimum flip may display the least frequent groups. Cladistics 21: 282-294.
    • (2005) Cladistics , vol.21 , pp. 282-294
    • Goloboff, P.A.1
  • 67
    • 45749124657 scopus 로고    scopus 로고
    • TNT, a free program for phylogenetic analysis
    • Goloboff, P.,Farris, J., and Nixon, K. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.
    • (2008) Cladistics , vol.24 , pp. 774-786
    • Goloboff, P.1    Farris, J.2    Nixon, K.3
  • 68
    • 34548554071 scopus 로고    scopus 로고
    • On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT
    • Goloboff, P. A., and Pol, D. 2007. On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT. Syst. Biol. 56: 485-495.
    • (2007) Syst. Biol , vol.56 , pp. 485-495
    • Goloboff, P.A.1    Pol, D.2
  • 69
    • 0000365320 scopus 로고
    • Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
    • Goodman, M., Czelusniak, J., Moore, G. W., Romeroherrera, A. E., and Matsuda, G. 1979. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst. Zool. 28: 132-163.
    • (1979) Syst. Zool , vol.28 , pp. 132-163
    • Goodman, M.1    Czelusniak, J.2    Moore, G.W.3    Romeroherrera, A.E.4    Matsuda, G.5
  • 70
    • 0041834716 scopus 로고    scopus 로고
    • Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
    • Goremykin, V., Hirsch-Ernst, K. I., Wolfl, S., andHellwig, F. H. 2003. Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol. Biol. Evol. 20: 1499-1505.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 1499-1505
    • Goremykin, V.1    Hirsch-Ernst, K.I.2    Wolfl, S.3    andHellwig, F.H.4
  • 71
    • 3042683994 scopus 로고    scopus 로고
    • The chloroplast genome of Nymphaea alba: Whole-genome analyses and the problem of identifying the most basal angiosperm
    • Goremykin, V., Hirsch-Ernst, K. I., Wölfl, S., and Hellwig, F. H. 2004. The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm. Mol. Biol. Evol. 21:1445-1454.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 1445-1454
    • Goremykin, V.1    Hirsch-Ernst, K.I.2    Wölfl, S.3    Hellwig, F.H.4
  • 72
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal, A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst. Biol. 47: 9-17.
    • (1998) Syst. Biol , vol.47 , pp. 9-17
    • Graybeal, A.1
  • 73
    • 4344631970 scopus 로고    scopus 로고
    • Evolution of genome size in pines (Pinus) and its life history correlates: Supertree analysis
    • Grotkopp, E., Rejmanek, M., Sanderson, M. J., and Rost, T. L. 2004. Evolution of genome size in pines (Pinus) and its life history correlates: supertree analysis. Evolution 58: 1705-1729.
    • (2004) Evolution , vol.58 , pp. 1705-1729
    • Grotkopp, E.1    Rejmanek, M.2    Sanderson, M.J.3    Rost, T.L.4
  • 74
    • 0030253222 scopus 로고    scopus 로고
    • Reconstruction of ancient molecular phylogeny
    • Guigó, R., Muchnik, I., and Smith, T. F. 1996. Reconstruction of ancient molecular phylogeny. Mol Phylogenet Evol. 6: 189-213.
    • (1996) Mol Phylogenet Evol , vol.6 , pp. 189-213
    • Guigó, R.1    Muchnik, I.2    Smith, T.F.3
  • 75
    • 0001827735 scopus 로고
    • Ribosomal RNA sequences for inferring phylogeny wirthin the grass family (Poaceae)
    • Hamby, R. K., and Zimmer, E. A. 1992. Ribosomal RNA sequences for inferring phylogeny wirthin the grass family (Poaceae). Plant Syst. Evol. 160: 29-37.
    • (1992) Plant Syst. Evol , vol.160 , pp. 29-37
    • Hamby, R.K.1    Zimmer, E.A.2
  • 77
    • 43249090276 scopus 로고    scopus 로고
    • Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?
    • Hartmann, S., and Vision, T. J. 2008. Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment? BMC Evol Biol. 8: 95.
    • (2008) BMC Evol Biol , vol.8 , pp. 95
    • Hartmann, S.1    Vision, T.J.2
  • 78
    • 0032965634 scopus 로고    scopus 로고
    • Perspective: Highly variable loci and their interpretation in evolution and conservation
    • Hedrick, P. W. 1999. Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318.
    • (1999) Evolution , vol.53 , pp. 313-318
    • Hedrick, P.W.1
  • 79
    • 13944260105 scopus 로고    scopus 로고
    • Timing of Early Cretaceous angiosperm diversification and possible links to major paleoenvironmental change
    • Heimhofer U., Hochuli P. A., Burla S., Dinis J. M. L., and Weissert, H. 2005. Timing of Early Cretaceous angiosperm diversification and possible links to major paleoenvironmental change. Geology 33: 141-144.
    • (2005) Geology , vol.33 , pp. 141-144
    • Heimhofer, U.1    Hochuli, P.A.2    Burla, S.3    Dinis, J.M.L.4    Weissert, H.5
  • 81
    • 65349182630 scopus 로고    scopus 로고
    • Hughes, N. F. 1994. The Enigma ofAngiosperm Origins. Cambridge University Press, Cambridge, UK. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
    • Hughes, N. F. 1994. The Enigma ofAngiosperm Origins. Cambridge University Press, Cambridge, UK. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
  • 83
    • 0043015531 scopus 로고    scopus 로고
    • Microsatellites, from molecules to populations and back
    • Jarne, P., and Lagoda, P. J. L. 1996. Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 11: 424-430.
    • (1996) Trends Ecol. Evol , vol.11 , pp. 424-430
    • Jarne, P.1    Lagoda, P.J.L.2
  • 86
    • 0032773940 scopus 로고    scopus 로고
    • Homoplasy increases phylogenetic structure
    • Källersjö M., Albert, V. A., and Farris, J. S. 1999. Homoplasy increases phylogenetic structure. Cladistics 15: 91-93.
    • (1999) Cladistics , vol.15 , pp. 91-93
    • Källersjö, M.1    Albert, V.A.2    Farris, J.S.3
  • 87
    • 35348939377 scopus 로고    scopus 로고
    • Progress and challenges in studies of the evolution of development
    • Kellogg, E. A. 2006. Progress and challenges in studies of the evolution of development. J. Exp. Bot. 57: 3505-3516.
    • (2006) J. Exp. Bot , vol.57 , pp. 3505-3516
    • Kellogg, E.A.1
  • 88
    • 0035103260 scopus 로고    scopus 로고
    • Performance of a divergence time estimation method under a probabilistic model of rate evolution
    • Kishino, H., Thorne, J. L., and Bruno, W. J. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 18: 352-361.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 352-361
    • Kishino, H.1    Thorne, J.L.2    Bruno, W.J.3
  • 91
    • 34548575126 scopus 로고    scopus 로고
    • Liu, L., and Pearl, D. K. 2007. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56: 504-514. Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46: 523-536.
    • Liu, L., and Pearl, D. K. 2007. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56: 504-514. Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46: 523-536.
  • 93
    • 0036699004 scopus 로고    scopus 로고
    • Perils of paralogy: Using HSP70 genes for inferring organismal phylogenies
    • Martin, A. P., and Burg, T. M. 2002. Perils of paralogy: using HSP70 genes for inferring organismal phylogenies. Systematic Biology 41: 570-587.
    • (2002) Systematic Biology , vol.41 , pp. 570-587
    • Martin, A.P.1    Burg, T.M.2
  • 94
    • 0033615479 scopus 로고    scopus 로고
    • The root of angiosperm phylogeny inferred from duplicate phytochrome genes
    • Mathews, S., and Donoghue, M. J. 1999. The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science 286: 947-950.
    • (1999) Science , vol.286 , pp. 947-950
    • Mathews, S.1    Donoghue, M.J.2
  • 95
    • 56549101000 scopus 로고    scopus 로고
    • The vestigial olfactory receptor subgenome of odontocete whales: Phylogenetic congruence between gene-tree reconciliation and supermatrix methods
    • McGowen, M. R., Clark, C., and Gatesy, J. 2008. The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods. Syst. Biol. 57: 574-590.
    • (2008) Syst. Biol , vol.57 , pp. 574-590
    • McGowen, M.R.1    Clark, C.2    Gatesy, J.3
  • 96
    • 34547803149 scopus 로고    scopus 로고
    • Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes
    • McMahon, M. M., and Sanderson, M. J. 2006. Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes. Syst. Biol. 55: 818-836.
    • (2006) Syst. Biol , vol.55 , pp. 818-836
    • McMahon, M.M.1    Sanderson, M.J.2
  • 97
    • 28844463698 scopus 로고    scopus 로고
    • Emerging technologies in DNA sequencing
    • Metzker, M. L. 2005. Emerging technologies in DNA sequencing. Genome Res. 15: 1767-1776.
    • (2005) Genome Res , vol.15 , pp. 1767-1776
    • Metzker, M.L.1
  • 99
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal an- giosperms
    • Moore, M. J., Bell, C.D., Soltis, P. S., and Soltis, D. E. 2007. Using plastid genome-scale data to resolve enigmatic relationships among basal an- giosperms. Proc. Natl. Acad. Sci. USA 104: 19363-19368.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 101
    • 25144465712 scopus 로고    scopus 로고
    • How much can evolved characters tell us about the tree that generated them?
    • Gascuel, O, Steel, M, Eds, Oxford Univ. Press, Oxford
    • Mossel, E., and Steel, M. 2005. How much can evolved characters tell us about the tree that generated them? In: Mathematics ofEvolution and Phylogeny. pp. 384-412. Gascuel, O., Steel, M., Eds., Oxford Univ. Press, Oxford.
    • (2005) Mathematics ofEvolution and Phylogeny , pp. 384-412
    • Mossel, E.1    Steel, M.2
  • 102
    • 0025116138 scopus 로고
    • Phylogenetic relationships of the Santalales and relatives
    • Nickrent, D. L., and Franchina, C. R. 1990. Phylogenetic relationships of the Santalales and relatives. J. Mol. Evol. 31: 294-301.
    • (1990) J. Mol. Evol , vol.31 , pp. 294-301
    • Nickrent, D.L.1    Franchina, C.R.2
  • 103
    • 0000805274 scopus 로고
    • A parsimony analysis of the Asteridae sensu lato based on rbcL sequences
    • Olmstead, R. G., Bremer, B., Scott, K. M., and Palmer, J. D. 1993. A parsimony analysis of the Asteridae sensu lato based on rbcL sequences. Ann. Mo. Bot. Gard. 80: 700-722.
    • (1993) Ann. Mo. Bot. Gard , vol.80 , pp. 700-722
    • Olmstead, R.G.1    Bremer, B.2    Scott, K.M.3    Palmer, J.D.4
  • 105
    • 0031774059 scopus 로고    scopus 로고
    • GeneTree: Comparing gene and species trees using reconciled trees
    • Page, R. D. M. 1998. GeneTree: comparing gene and species trees using reconciled trees. Bioinformatics 14: 819-820.
    • (1998) Bioinformatics , vol.14 , pp. 819-820
    • Page, R.D.M.1
  • 106
    • 0033936591 scopus 로고    scopus 로고
    • Extracting species trees from complex gene trees: Reconciled trees and the vertebrate phylogeny
    • Page, R. D. M. 2000. Extracting species trees from complex gene trees: reconciled trees and the vertebrate phylogeny. Mol. Phylogent. Evol. 14: 89-106.
    • (2000) Mol. Phylogent. Evol , vol.14 , pp. 89-106
    • Page, R.D.M.1
  • 108
    • 0002377180 scopus 로고
    • Evolution of chloroplast and mitochondrial DNA in plants and algae
    • R. J. MacIntyre Ed, Plenum, New York, NY
    • Palmer, J. D. 1985. Evolution of chloroplast and mitochondrial DNA in plants and algae. Molecular Evolutionary Genetics. pp. 131-238. R. J. MacIntyre Ed., Plenum, New York, NY.
    • (1985) Molecular Evolutionary Genetics , pp. 131-238
    • Palmer, J.D.1
  • 109
    • 0002696220 scopus 로고
    • Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation
    • Palmer, J. D. 1987. Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Am. Nat. 130: S6-S29.
    • (1987) Am. Nat , vol.130
    • Palmer, J.D.1
  • 110
    • 17844393939 scopus 로고    scopus 로고
    • The plant tree of life: An overview and some points of view
    • Palmer, J. D., Soltis, D. E., and Chase, M. W. 2004. The plant tree of life: An overview and some points of view. Amer. J. Bot.91: 1437-1445.
    • (2004) Amer. J. Bot , vol.91 , pp. 1437-1445
    • Palmer, J.D.1    Soltis, D.E.2    Chase, M.W.3
  • 111
    • 65349136069 scopus 로고
    • Studies on higher plant chloroplast and mitochondrial DNA
    • Palmer, J. D., and Thompson, W. F. 1980. Studies on higher plant chloroplast and mitochondrial DNA. Carnegie Institution Year Book 79: 120-123.
    • (1980) Carnegie Institution Year Book , vol.79 , pp. 120-123
    • Palmer, J.D.1    Thompson, W.F.2
  • 112
    • 0019851746 scopus 로고
    • Rearrangements in the chloroplast genomes of mung bean and pea
    • Palmer, J. D., and Thompson, W. F. 1981. Rearrangements in the chloroplast genomes of mung bean and pea. Proc. Natl. Acad. Sci. USA 78: 5533-5537.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 5533-5537
    • Palmer, J.D.1    Thompson, W.F.2
  • 113
    • 0020144964 scopus 로고
    • Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost
    • Palmer, J. D., and Thompson, W. F. 1982. Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost. Cell 29: 537-550.
    • (1982) Cell , vol.29 , pp. 537-550
    • Palmer, J.D.1    Thompson, W.F.2
  • 114
    • 0036005524 scopus 로고    scopus 로고
    • Matrix representation with parsimony, taxonomic congruence, and total evidence
    • Pisani, D., and Wilkinson, M. 2002. Matrix representation with parsimony, taxonomic congruence, and total evidence. Syst. Biol. 51: 151-155.
    • (2002) Syst. Biol , vol.51 , pp. 151-155
    • Pisani, D.1    Wilkinson, M.2
  • 115
    • 0001741936 scopus 로고    scopus 로고
    • Relationship of the order Apiales to subclass Asteridae: A re-evaluation of morphological characters based on insights from molecular data
    • Plunkett, G. M. 2001. Relationship of the order Apiales to subclass Asteridae: a re-evaluation of morphological characters based on insights from molecular data. Edinb. J. Bot. 58: 183-200.
    • (2001) Edinb. J. Bot , vol.58 , pp. 183-200
    • Plunkett, G.M.1
  • 117
    • 0035283384 scopus 로고    scopus 로고
    • Chloroplast microsatel-lites: New tools for studies in plant ecology and evolution
    • Provan, J., Powell, W., and Hollingsworth, P. M. 2001. Chloroplast microsatel-lites: new tools for studies in plant ecology and evolution. Trends Ecol. Evol. 16: 142-147.
    • (2001) Trends Ecol. Evol , vol.16 , pp. 142-147
    • Provan, J.1    Powell, W.2    Hollingsworth, P.M.3
  • 118
    • 0029495388 scopus 로고
    • A modification to Baum and Ragan's method for combining phylogenetic trees
    • Purvis, A. 1995. A modification to Baum and Ragan's method for combining phylogenetic trees. Syst. Biol. 44: 251-255.
    • (1995) Syst. Biol , vol.44 , pp. 251-255
    • Purvis, A.1
  • 119
    • 0000031661 scopus 로고
    • Molecular phy-logenetics of the Magnoliidae: Cladistic analyses of nucleotide sequences of the plastid gene rbcL
    • Qiu, Y.-L., Chase, M. W., Les, D. H., and Parks, C. R. 1993. Molecular phy-logenetics of the Magnoliidae: cladistic analyses of nucleotide sequences of the plastid gene rbcL. Ann. Mo. Bot. Gard. 80: 587-606.
    • (1993) Ann. Mo. Bot. Gard , vol.80 , pp. 587-606
    • Qiu, Y.-L.1    Chase, M.W.2    Les, D.H.3    Parks, C.R.4
  • 121
    • 0026822436 scopus 로고
    • Phylogenetic inference based on matrix representation of trees
    • Ragan, M. A. 1992. Phylogenetic inference based on matrix representation of trees. Mol. Phylogenet. Evol. 1: 53-58.
    • (1992) Mol. Phylogenet. Evol , vol.1 , pp. 53-58
    • Ragan, M.A.1
  • 123
    • 0002797404 scopus 로고
    • Evolutionary analysis of plant DNA sequences
    • Ritland, K., and Clegg, M. T. 1987. Evolutionary analysis of plant DNA sequences. Am. Nat. 130: S74-S100.
    • (1987) Am. Nat , vol.130
    • Ritland, K.1    Clegg, M.T.2
  • 125
    • 0036005526 scopus 로고    scopus 로고
    • Building supertrees: An empirical assessment using the grass family (Poaceae)
    • Salamin, N., Chase, M. W., Hodkinson, T. R., and Savolainen, V. 2002. Building supertrees: an empirical assessment using the grass family (Poaceae). Syst. Biol. 51: 136-150.
    • (2002) Syst. Biol , vol.51 , pp. 136-150
    • Salamin, N.1    Chase, M.W.2    Hodkinson, T.R.3    Savolainen, V.4
  • 126
    • 19044382857 scopus 로고    scopus 로고
    • Towards building the tree of life: A simulation study for all angiosperm genera
    • Salamin, N., Hodkinson, T. R., and Savolainen, V. 2005. Towards building the tree of life: a simulation study for all angiosperm genera. Syst. Biol. 54: 183-196.
    • (2005) Syst. Biol , vol.54 , pp. 183-196
    • Salamin, N.1    Hodkinson, T.R.2    Savolainen, V.3
  • 127
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • Sanderson, M. J. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19: 101-109.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 128
    • 34548403121 scopus 로고    scopus 로고
    • Construction and annotation of large phylogenetic trees
    • Sanderson, M. J. 2007. Construction and annotation of large phylogenetic trees. Australian Syst. Bot. 20: 287-301.
    • (2007) Australian Syst. Bot , vol.20 , pp. 287-301
    • Sanderson, M.J.1
  • 129
    • 46849087728 scopus 로고    scopus 로고
    • Phylogenetic signal in the eukaryotic tree oflife
    • Sanderson, M. J. 2008. Phylogenetic signal in the eukaryotic tree oflife. Science 321: 121-123.
    • (2008) Science , vol.321 , pp. 121-123
    • Sanderson, M.J.1
  • 131
    • 0042695888 scopus 로고    scopus 로고
    • The challenge of constructing large phylogenetic trees
    • Sanderson, M. J., and Driskell, A. C. 2003. The challenge of constructing large phylogenetic trees. Trends Plant Sci. 8: 374-379.
    • (2003) Trends Plant Sci , vol.8 , pp. 374-379
    • Sanderson, M.J.1    Driskell, A.C.2
  • 132
    • 0038158155 scopus 로고    scopus 로고
    • Obtaining maximal concatenated phylogenetic data sets from large sequence databases
    • Sanderson, M. J., Driskell, A. C., Ree, R. H., Eulenstein, O., and Langley, S. 2003. Obtaining maximal concatenated phylogenetic data sets from large sequence databases. Mol. Biol. Evol. 20: 1036-1042.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 1036-1042
    • Sanderson, M.J.1    Driskell, A.C.2    Ree, R.H.3    Eulenstein, O.4    Langley, S.5
  • 133
    • 34248217100 scopus 로고    scopus 로고
    • Inferring angiosperm phylogeny from EST data with widespread gene duplication
    • Sanderson, M. J., and McMahon, M. M. 2007. Inferring angiosperm phylogeny from EST data with widespread gene duplication. BMC Evol. Biol. 7:83.
    • (2007) BMC Evol. Biol , vol.7 , pp. 83
    • Sanderson, M.J.1    McMahon, M.M.2
  • 134
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • Sang, T. 2002. Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit. Rev. Biochem. Mole. Biol. 37: 121-147.
    • (2002) Crit. Rev. Biochem. Mole. Biol , vol.37 , pp. 121-147
    • Sang, T.1
  • 135
    • 0016800090 scopus 로고
    • A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
    • Sanger, F., and Coulson, A. R. 1975. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J Mol Biol. 94: 441-448.
    • (1975) J Mol Biol , vol.94 , pp. 441-448
    • Sanger, F.1    Coulson, A.R.2
  • 136
  • 139
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster, S. C. 2008. Next-generation sequencing transforms today's biology. Nat. Methods 5: 16-8.
    • (2008) Nat. Methods , vol.5 , pp. 16-18
    • Schuster, S.C.1
  • 140
    • 0034808850 scopus 로고    scopus 로고
    • Flammability and serotiny as strategies: Correlated evolution in pines
    • Schwilk, D. W., and Ackerley, D. D. 2001. Flammability and serotiny as strategies: correlated evolution in pines. Oikos 94: 326-336.
    • (2001) Oikos , vol.94 , pp. 326-336
    • Schwilk, D.W.1    Ackerley, D.D.2
  • 141
    • 0031296691 scopus 로고    scopus 로고
    • Inferring species trees from gene trees: A phylogenetic analysis of the elapidae (serpentes) based on the amino acid sequences of venom proteins
    • Slowinski, J. B., Knight, A., and Rooney, A. P. 1997. Inferring species trees from gene trees: A phylogenetic analysis of the elapidae (serpentes) based on the amino acid sequences of venom proteins. Mol. Phylogenet. Evol. 8: 349-362.
    • (1997) Mol. Phylogenet. Evol , vol.8 , pp. 349-362
    • Slowinski, J.B.1    Knight, A.2    Rooney, A.P.3
  • 143
    • 33847240958 scopus 로고    scopus 로고
    • A 567-taxon data set for angiosperms: The challenges posed by Bayesian analyses of large data sets
    • Soltis, D. E., Gitzendanner, M. A., and Soltis, P. S. 2007. A 567-taxon data set for angiosperms: the challenges posed by Bayesian analyses of large data sets. Int. J. Plant Sci. 168: 137-157.
    • (2007) Int. J. Plant Sci , vol.168 , pp. 137-157
    • Soltis, D.E.1    Gitzendanner, M.A.2    Soltis, P.S.3
  • 147
    • 0025303633 scopus 로고
    • rbcL sequence divergence and phylogenetic relationships in Saxifragaceae sensu lato
    • Soltis, D. E., Soltis, P. S., Clegg, M. T., and Durbin, M. 1990. rbcL sequence divergence and phylogenetic relationships in Saxifragaceae sensu lato. Proc. Nat. Acad. Sci. U.S.A. 87: 4640-4644.
    • (1990) Proc. Nat. Acad. Sci. U.S.A , vol.87 , pp. 4640-4644
    • Soltis, D.E.1    Soltis, P.S.2    Clegg, M.T.3    Durbin, M.4
  • 151
    • 0033604619 scopus 로고    scopus 로고
    • Angiosperm phylogeny inferred from multiple genes as a research tool for comparative biology
    • Soltis, P. S., Soltis, D. E., and Chase, M. W. 1999. Angiosperm phylogeny inferred from multiple genes as a research tool for comparative biology. Nature 402: 402-404.
    • (1999) Nature , vol.402 , pp. 402-404
    • Soltis, P.S.1    Soltis, D.E.2    Chase, M.W.3
  • 152
    • 50849126804 scopus 로고    scopus 로고
    • Srivatsan, A., Han, Y., Peng, J., Tehranchi, A. K., Gibbs, R., Wang, J. D., and Chen, R. 2008. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet 4: e1000139.
    • Srivatsan, A., Han, Y., Peng, J., Tehranchi, A. K., Gibbs, R., Wang, J. D., and Chen, R. 2008. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet 4: e1000139.
  • 153
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phyloge- netic analyses with thousands of taxa and mixed models
    • Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phyloge- netic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 154
    • 41849131023 scopus 로고    scopus 로고
    • Maximum likelihood supertrees
    • Steel, M., and Rodrigo, A. 2008. Maximum likelihood supertrees. Syst. Biol. 57: 243-250.
    • (2008) Syst. Biol , vol.57 , pp. 243-250
    • Steel, M.1    Rodrigo, A.2
  • 155
    • 0032573569 scopus 로고    scopus 로고
    • In search of the first flower: A Jurassic angiosperm, Archaefructus, from northeast China. I
    • Sun, G., Dilcher, D. L., Zheng, S., and Zhou, Z. 1998. In search of the first flower: A Jurassic angiosperm, Archaefructus, from northeast China. I. Science 282: 1692-1695.
    • (1998) Science , vol.282 , pp. 1692-1695
    • Sun, G.1    Dilcher, D.L.2    Zheng, S.3    Zhou, Z.4
  • 157
    • 0037012877 scopus 로고    scopus 로고
    • Archaefructaceae, a new basal angiosperm family. Science 296: 899-904.
    • Archaefructaceae, a new basal angiosperm family. Science 296: 899-904.
  • 158
    • 0017872026 scopus 로고
    • Pollination by lemurs and marsupials: An archaic coevolutionary system
    • Sussman, R. W., and Raven, P. H. 1978. Pollination by lemurs and marsupials: An archaic coevolutionary system. Science 200: 731-736.
    • (1978) Science , vol.200 , pp. 731-736
    • Sussman, R.W.1    Raven, P.H.2
  • 159
    • 34250775100 scopus 로고    scopus 로고
    • Ecological and evolutionary determinants of a key plant functional trait: Wood density and its community- wide variation across latitude and elevation
    • Swenson, N. G., and Enquist, B. J. 2007. Ecological and evolutionary determinants of a key plant functional trait: wood density and its community- wide variation across latitude and elevation. Amer. J. Bot. 94: 451-459.
    • (2007) Amer. J. Bot , vol.94 , pp. 451-459
    • Swenson, N.G.1    Enquist, B.J.2
  • 161
    • 65349196360 scopus 로고    scopus 로고
    • other methods, Version 4.0 beta 10. Sinauer Assoc, Sunderland, MA
    • other methods). Version 4.0 beta 10. Sinauer Assoc., Sunderland, MA.
  • 162
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thorne, J. L., and Kishino, H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51: 689-702.
    • (2002) Syst. Biol , vol.51 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 163
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution of the rate of molecular evolution
    • Thorne, J. L., Kishino, H., and Painter, I. S. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15: 1647-1657.
    • (1998) Mol. Biol. Evol , vol.15 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3
  • 164
    • 11244289722 scopus 로고    scopus 로고
    • Vertebrate dispersal of seed plants through time
    • Tiffney, B. H. 2004. Vertebrate dispersal of seed plants through time. Ann. Rev. Ecol. Evol. Syst. 35: 1-29.
    • (2004) Ann. Rev. Ecol. Evol. Syst , vol.35 , pp. 1-29
    • Tiffney, B.H.1
  • 166
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome. Science 291: 1304-1351.
    • The sequence of the human genome. Science 291: 1304-1351.
  • 168
    • 14844350168 scopus 로고    scopus 로고
    • Phylomatic: Tree assembly for applied phylogenetics
    • Webb, C. O., and Donoghue, M. J. 2004. Phylomatic: Tree assembly for applied phylogenetics. Mol. Ecol. Notes 5: 181-183.
    • (2004) Mol. Ecol. Notes , vol.5 , pp. 181-183
    • Webb, C.O.1    Donoghue, M.J.2
  • 169
    • 46249126320 scopus 로고    scopus 로고
    • DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
    • Wehe, A., Bansal, M. S., Burleigh, J. G., and Eulenstein, O. 2008. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics 24: 1540-1541.
    • (2008) Bioinformatics , vol.24 , pp. 1540-1541
    • Wehe, A.1    Bansal, M.S.2    Burleigh, J.G.3    Eulenstein, O.4
  • 170
    • 0000162362 scopus 로고    scopus 로고
    • Phylogenetic incongruence: Window into genome history and moleclar evolution
    • D. E. Soltis, P. S. Soltis, and J. J. Doyle, editors, Kluwer Academic Publishers, Boston
    • Wendel, J. F., and Doyle, J. J. 1998. Phylogenetic incongruence: window into genome history and moleclar evolution. Pages 265-97. In: D. E. Soltis, P. S. Soltis, and J. J. Doyle, editors. Molecular Systematics ofPlants II: DNA Sequencing. Kluwer Academic Publishers, Boston.
    • (1998) Molecular Systematics ofPlants II: DNA Sequencing , pp. 265-297
    • Wendel, J.F.1    Doyle, J.J.2
  • 171
    • 0032225748 scopus 로고    scopus 로고
    • Does adding characters with missing data increase or decrease phylogenetic accuracy?
    • Wiens, J. J. 1998. Does adding characters with missing data increase or decrease phylogenetic accuracy? Syst. Biol. 47: 625-640.
    • (1998) Syst. Biol , vol.47 , pp. 625-640
    • Wiens, J.J.1
  • 172
    • 0042905752 scopus 로고    scopus 로고
    • Missing data, incomplete taxa, and phylogenetic accuracy
    • Wiens, J. J. 2003. Missing data, incomplete taxa, and phylogenetic accuracy. Syst. Biol. 52: 528-538.
    • (2003) Syst. Biol , vol.52 , pp. 528-538
    • Wiens, J.J.1
  • 173
    • 30344464074 scopus 로고    scopus 로고
    • Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?
    • Wiens, J. J. 2005. Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Syst. Biol. 54: 731-742.
    • (2005) Syst. Biol , vol.54 , pp. 731-742
    • Wiens, J.J.1
  • 174
    • 31344471014 scopus 로고    scopus 로고
    • Missing data and the design of phylogenetic analyses
    • Wiens, J. J. 2006. Missing data and the design of phylogenetic analyses. J. Biomed. Inform. 39: 34-42.
    • (2006) J. Biomed. Inform , vol.39 , pp. 34-42
    • Wiens, J.J.1
  • 175
    • 0035823864 scopus 로고    scopus 로고
    • Evolution of the an- giosperms: Calibrating the family tree
    • Wikström, N., Savolainen, V., and Chase, M. W. 2001. Evolution of the an- giosperms: calibrating the family tree. Proc. Royal Soc. Lond., B. 268: 2211-2220.
    • (2001) Proc. Royal Soc. Lond., B , vol.268 , pp. 2211-2220
    • Wikström, N.1    Savolainen, V.2    Chase, M.W.3
  • 177
    • 0001858111 scopus 로고    scopus 로고
    • Contributions of PCR-based methods it plant systematics and evolutionary biology
    • Kluwer Academic Press, Boston
    • Wolfe, A. D., and Liston, A. 1998. Contributions of PCR-based methods it plant systematics and evolutionary biology. pp. 1-42. In: Molecular Systematics ofPlants II: DNA Sequencing. Kluwer Academic Press, Boston.
    • (1998) Molecular Systematics ofPlants II: DNA Sequencing , pp. 1-42
    • Wolfe, A.D.1    Liston, A.2
  • 179
    • 18144430654 scopus 로고    scopus 로고
    • Identifying optimal incomplete phylogenetic data sets from sequence databases
    • Yan, C. H., Burleigh, J. G., and Eulenstein, O. 2005. Identifying optimal incomplete phylogenetic data sets from sequence databases. Mol. Phylogenet. Evol. 35: 528-535.
    • (2005) Mol. Phylogenet. Evol , vol.35 , pp. 528-535
    • Yan, C.H.1    Burleigh, J.G.2    Eulenstein, O.3
  • 180
    • 0001354070 scopus 로고
    • Evolution of higher-plant chloroplast DNA-encoded genes: Implications for structure-function and phylogenetic studies
    • Zurawski, G., and Clegg, M. T. 1987. Evolution of higher-plant chloroplast DNA-encoded genes: Implications for structure-function and phylogenetic studies. Annu. Rev. Plant Physiol. 38: 391-418.
    • (1987) Annu. Rev. Plant Physiol , vol.38 , pp. 391-418
    • Zurawski, G.1    Clegg, M.T.2
  • 181
    • 0001336097 scopus 로고
    • rbcL sequence data and phylogenetic reconstruction in seed plants: Foreword
    • Zurawski, G., and Clegg, M. T. 1993. rbcL sequence data and phylogenetic reconstruction in seed plants: foreword. Ann. Missouri Bot. Garden 80: 523-525.
    • (1993) Ann. Missouri Bot. Garden , vol.80 , pp. 523-525
    • Zurawski, G.1    Clegg, M.T.2


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