Clann: Investigating phylogenetic information through supertree analyses

Bioinformatics

Volumn 21, Issue 3, 2005, Pages 390-392

  Creevey, Chris J ^a   McInerney, J O ^a  

^a NATIONAL UNIVERSITY OF IRELAND   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; COMPUTER LANGUAGE; COMPUTER PROGRAM; INFORMATION SYSTEM; ONLINE SYSTEM; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; QUALITY CONTROL; SCORING SYSTEM; TAXONOMY;

EID: 13844250623     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti020     Document Type: Article

References (13)

1. Archie,J.W. (1989) A randomisation test for phylogenetic information in systematic data. Syst. Zoo., 38, 239-252.
2. Baum,B.R. (1992) Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees. Taxon, 41, 3-10.
3. Bininda-Emonds,O.R.P., Gittleman,J.L. and Steel,M. (2002) The (super)tree of life: procedures, problems and prospects. Ann. Rev. Ecol. Syst., 33, 265-289.
4. Creevey,C.J., Fitzpatrick,D.A., Philip,G.K., Kinsella,R.J., O'Connell,M.J., Pentony,M.M., Travers,S.A., Wilkinson,M. and McInerney,J.O. (2004) Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proc. R. Soc. Lond. B. Biol. Sci., (in press).
5. Efron,B. (1979) Bootstrap methods: another look at the jackknife. Ann. Stat., 7, 1-26.
6. Faith,D.P. and Cranston,P.S. (1991) Could a cladogram this short have arisen by chance alone? On permutation tests for cladistic structure. Cladistics, 7, 1-28.
7. Lapointe,F.-J. and Cucumel,G. (1997) The average consensus procedure: combination of weighted trees containing identical or overlapping sets of taxa. Syst. Biol., 46 306-312.
8. Lapointe,F.J., Wilkinson,M. and Bryant,D. (2003) Matrix representations with parsimony or with distances: two sides of the same coin? Syst. Biol., 52, 865-868.
9. Purvis,A. (1995) A composite estimate of primate phylgoeny. Philos. Trans. R. Soc. Lond. B. Biol. Sci., 348, 405-421.
10. Ragan,M.A. (1992) Matrix representation in reconstructing phylogenetic-relationships among the eukaryotes. Biosystems, 28 47-55.
11. Steel,M. and Penny,D. (1993) Distributions of tree comparison metrics - some new results. Syst. Biol., 42, 126-141.
12. Swofford,D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*And Other Methods). Version 4. Sinauer Associates, Sunderland, MA.
13. Wilkinson,M., Thorley,J.L., Pisani,D., Lapointe,F.-J. and McInerney,J. (2004) Some desiderata for liberal supertrees. In Bininda-Emonds,O.R.P. (ed.), Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life. Kluwer Academic, Dordrecht.