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Volumn 20, Issue 7, 2003, Pages 1036-1042

Obtaining maximal concatenated phylogenetic data sets from large sequence databases

Author keywords

Biclique; NP complete; Optimization; Phylogeny; Sequence concatenation

Indexed keywords

ACCURACY; ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; CALCULATION; DATA BASE; DNA SEQUENCE; GENE; GENE CLUSTER; K GENE; LEAFY VEGETABLE; MULTIGENE FAMILY; NONHUMAN; ORTHOLOGY; PHYLOGENETIC TREE CONSTRUCTION METHOD; PHYLOGENY; PLANT GENETICS;

EID: 0038158155     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg115     Document Type: Article
Times cited : (103)

References (42)
  • 4
    • 0031371067 scopus 로고    scopus 로고
    • Multiple sources of character information and the phylogeny of Hawaiian drosophilids
    • Baker, R. H., and R. Desalle. 1997. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46:654-673.
    • (1997) Syst. Biol. , vol.46 , pp. 654-673
    • Baker, R.H.1    Desalle, R.2
  • 11
    • 0035749071 scopus 로고    scopus 로고
    • Bacterial molecular phylogeny using supertree approach
    • Daubin, V., M. Gouy, and G. Perriere. 2001. Bacterial molecular phylogeny using supertree approach. Genome Informatics 12: 155-164.
    • (2001) Genome Informatics , vol.12 , pp. 155-164
    • Daubin, V.1    Gouy, M.2    Perriere, G.3
  • 15
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 17
    • 0033666273 scopus 로고    scopus 로고
    • Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
    • Graham, S. W., and R. G. Olmstead. 2000. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am. J. Bot. 87:1712-1730.
    • (2000) Am. J. Bot. , vol.87 , pp. 1712-1730
    • Graham, S.W.1    Olmstead, R.G.2
  • 18
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis, D. M. 1996. Inferring complex phylogenies. Nature 383: 130-131.
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 19
    • 0000947357 scopus 로고    scopus 로고
    • Approximating clique and biclique problems
    • Hochbaum, D. S. 1998. Approximating clique and biclique problems. J. Algorithms 29:174-200.
    • (1998) J. Algorithms , vol.29 , pp. 174-200
    • Hochbaum, D.S.1
  • 20
    • 0036554650 scopus 로고    scopus 로고
    • Fragmentary taxa, missing data, and ambiguity: Mistaken assumptions and conclusions
    • Kearney, M. 2002. Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions. Syst. Biol. 51:369-381.
    • (2002) Syst. Biol. , vol.51 , pp. 369-381
    • Kearney, M.1
  • 21
    • 0033985049 scopus 로고    scopus 로고
    • The SYSTERS protein sequence cluster set
    • Krause, A., J. Stoye, and M. Vingron. 2000. The SYSTERS protein sequence cluster set. Nucleic Acids Res. 28: 270-272.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 270-272
    • Krause, A.1    Stoye, J.2    Vingron, M.3
  • 23
    • 0035527407 scopus 로고    scopus 로고
    • Toward understanding Anophelinae (Diptera, Culicidae) phylogeny: Insights from nuclear single-copy genes and the weight of evidence
    • Krzywinski, J., R. C. Wilkerson, and N. J. Besansky. 2001. Toward understanding Anophelinae (Diptera, Culicidae) phylogeny: insights from nuclear single-copy genes and the weight of evidence. Syst. Biol. 50:540-556.
    • (2001) Syst. Biol. , vol.50 , pp. 540-556
    • Krzywinski, J.1    Wilkerson, R.C.2    Besansky, N.J.3
  • 27
    • 0034497887 scopus 로고    scopus 로고
    • Use of mitogenomic information in teleostean molecular phylogenetics: A tree-based exploration under the maximum-parsimony optimality criterion
    • Miya, M., and M. Nishida. 2000. Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion. Mol. Phylog. Evol. 17:437-455.
    • (2000) Mol. Phylog. Evol. , vol.17 , pp. 437-455
    • Miya, M.1    Nishida, M.2
  • 31
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm, M., C. E. V. Storm, and E. L. L. Sonnhammer. 2001. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314:1041-1052.
    • (2001) J. Mol. Biol. , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.V.2    Sonnhammer, E.L.L.3
  • 32
    • 0032030505 scopus 로고    scopus 로고
    • Phylogenetic supertrees: Assembling the trees of life
    • Sanderson, M. J., A. Purvis, and C. Henze. 1998. Phylogenetic supertrees: assembling the trees of life. Trends Ecol. Evol. 13: 105-109.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 105-109
    • Sanderson, M.J.1    Purvis, A.2    Henze, C.3
  • 34
    • 0032025585 scopus 로고    scopus 로고
    • Inferring complex phylogenies using parsimony: An empirical approach using three large DNA data sets for angiosperms
    • Soltis, D. E., P. S. Soltis, M. E. Mort, M. W. Chase, V. Savolainen, S. B. Hoot, and C. M. Morton. 1998. Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms. Syst. Biol. 47:32-42.
    • (1998) Syst. Biol. , vol.47 , pp. 32-42
    • Soltis, D.E.1    Soltis, P.S.2    Mort, M.E.3    Chase, M.W.4    Savolainen, V.5    Hoot, S.B.6    Morton, C.M.7
  • 35
    • 0033604619 scopus 로고    scopus 로고
    • Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
    • Soltis, P. S., D. E. Soltis, and M. W. Chase. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402:402-404.
    • (1999) Nature , vol.402 , pp. 402-404
    • Soltis, P.S.1    Soltis, D.E.2    Chase, M.W.3
  • 37
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D. M. Hillis, C. Moritz, and B. K. Mable, eds. Sinauer Associates, Sunderland, Mass.
    • Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pp 407-514 in D. M. Hillis, C. Moritz, and B. K. Mable, eds. Molecular systematics. Sinauer Associates, Sunderland, Mass.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 39
    • 0027968068 scopus 로고
    • ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 41
    • 0032225748 scopus 로고    scopus 로고
    • Does adding characters with missing data increase or decrease phylogenetic accuracy?
    • Wiens, J. J. 1998. Does adding characters with missing data increase or decrease phylogenetic accuracy? Syst. Biol. 47: 625-640.
    • (1998) Syst. Biol. , vol.47 , pp. 625-640
    • Wiens, J.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.