-
1
-
-
33645525893
-
MicroRNAS and their regulatory roles in plants
-
10.1146/annurev.arplant.57.032905.105218 16669754
-
MicroRNAS and their regulatory roles in plants. MW Jones-Rhoades DP Bartel B Bartel, Annu Rev Plant Biol 2006 57 19 53 10.1146/annurev.arplant.57. 032905.105218 16669754
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 19-53
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
Bartel, B.3
-
2
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
10.1038/ng1791 16736022
-
Functions of microRNAs and related small RNAs in plants. AC Mallory H Vaucheret, Nat Genet 2006 38 Suppl S31 36 10.1038/ng1791 16736022
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL
, pp. 31-36
-
-
Mallory, A.C.1
Vaucheret, H.2
-
3
-
-
34447550259
-
The role of small RNAs in abiotic stress
-
10.1016/j.febslet.2007.04.007 17451688
-
The role of small RNAs in abiotic stress. JR Phillips T Dalmay D Bartels, FEBS Lett 2007 581 19 3592 3597 10.1016/j.febslet.2007.04.007 17451688
-
(2007)
FEBS Lett
, vol.581
, Issue.19
, pp. 3592-3597
-
-
Phillips, J.R.1
Dalmay, T.2
Bartels, D.3
-
4
-
-
34347263491
-
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
-
10.1016/j.tplants.2007.05.001 17573231
-
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. R Sunkar V Chinnusamy J Zhu JK Zhu, Trends Plant Sci 2007 12 7 301 309 10.1016/j.tplants.2007.05.001 17573231
-
(2007)
Trends Plant Sci
, vol.12
, Issue.7
, pp. 301-309
-
-
Sunkar, R.1
Chinnusamy, V.2
Zhu, J.3
Zhu, J.K.4
-
5
-
-
26944437949
-
MicroRNA biogenesis and function in plants
-
10.1016/j.febslet.2005.07.071 16144699
-
MicroRNA biogenesis and function in plants. X Chen, FEBS Lett 2005 579 26 5923 5931 10.1016/j.febslet.2005.07.071 16144699
-
(2005)
FEBS Lett
, vol.579
, Issue.26
, pp. 5923-5931
-
-
Chen, X.1
-
6
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
15372072 10.1038/sj.emboj.7600385
-
MicroRNA genes are transcribed by RNA polymerase II. Y Lee M Kim J Han KH Yeom S Lee SH Baek VN Kim, Embo J 2004 23 20 4051 4060 15372072 10.1038/sj.emboj.7600385
-
(2004)
Embo J
, vol.23
, Issue.20
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
7
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
10.1016/S0960-9822(02)01017-5 12225663
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. W Park J Li R Song J Messing X Chen, Curr Biol 2002 12 17 1484 1495 10.1016/S0960-9822(02)01017-5 12225663
-
(2002)
Curr Biol
, vol.12
, Issue.17
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
9
-
-
4344637081
-
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions
-
15314213 10.1073/pnas.0403115101
-
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Y Kurihara Y Watanabe, Proc Natl Acad Sci USA 2004 101 34 12753 12758 15314213 10.1073/pnas.0403115101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.34
, pp. 12753-12758
-
-
Kurihara, Y.1
Watanabe, Y.2
-
10
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs
-
16081530 10.1073/pnas.0505461102
-
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. N Baumberger DC Baulcombe, Proc Natl Acad Sci USA 2005 102 33 11928 11933 16081530 10.1073/pnas.0505461102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.33
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
12
-
-
1842484780
-
Gene regulation: Ancient microRNA target sequences in plants
-
10.1038/428485a 15057819
-
Gene regulation: ancient microRNA target sequences in plants. SK Floyd JL Bowman, Nature 2004 428 6982 485 486 10.1038/428485a 15057819
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 485-486
-
-
Floyd, S.K.1
Bowman, J.L.2
-
13
-
-
32944464673
-
Cloning and characterization of micro-RNAs from moss
-
10.1111/j.1365-313X.2005.02499.x 16146523
-
Cloning and characterization of micro-RNAs from moss. T Arazi M Talmor-Neiman R Stav M Riese P Huijser DC Baulcombe, Plant J 2005 43 6 837 848 10.1111/j.1365-313X.2005.02499.x 16146523
-
(2005)
Plant J
, vol.43
, Issue.6
, pp. 837-848
-
-
Arazi, T.1
Talmor-Neiman, M.2
Stav, R.3
Riese, M.4
Huijser, P.5
Baulcombe, D.C.6
-
14
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
15849273 10.1105/tpc.105.032185
-
Antiquity of microRNAs and their targets in land plants. MJ Axtell DP Bartel, Plant Cell 2005 17 6 1658 1673 15849273 10.1105/tpc.105.032185
-
(2005)
Plant Cell
, vol.17
, Issue.6
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
15
-
-
34047136677
-
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
-
17359535 10.1186/1471-2229-7-13
-
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. I Fattash B Voss R Reski WR Hess W Frank, BMC Plant Biol 2007 7 13 17359535 10.1186/1471-2229-7-13
-
(2007)
BMC Plant Biol
, vol.7
, pp. 13
-
-
Fattash, I.1
Voss, B.2
Reski, R.3
Hess, W.R.4
Frank, W.5
-
16
-
-
29144527030
-
Plant microRNA: A small regulatory molecule with big impact
-
10.1016/j.ydbio.2005.10.036 16325172
-
Plant microRNA: a small regulatory molecule with big impact. B Zhang X Pan GP Cobb TA Anderson, Dev Biol 2006 289 1 3 16 10.1016/j.ydbio.2005.10.036 16325172
-
(2006)
Dev Biol
, vol.289
, Issue.1
, pp. 3-16
-
-
Zhang, B.1
Pan, X.2
Cobb, G.P.3
Anderson, T.A.4
-
17
-
-
4444234497
-
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA
-
15371337 10.1101/gad.307804
-
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. EA Parizotto P Dunoyer N Rahm C Himber O Voinnet, Genes Dev 2004 18 18 2237 2242 15371337 10.1101/gad.307804
-
(2004)
Genes Dev
, vol.18
, Issue.18
, pp. 2237-2242
-
-
Parizotto, E.A.1
Dunoyer, P.2
Rahm, N.3
Himber, C.4
Voinnet, O.5
-
18
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
10.1016/j.cell.2006.03.043 16751099
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. J Han Y Lee KH Yeom JW Nam I Heo JK Rhee SY Sohn Y Cho BT Zhang VN Kim, Cell 2006 125 5 887 901 10.1016/j.cell.2006.03.043 16751099
-
(2006)
Cell
, vol.125
, Issue.5
, pp. 887-901
-
-
Han, J.1
Lee, Y.2
Yeom, K.H.3
Nam, J.W.4
Heo, I.5
Rhee, J.K.6
Sohn, S.Y.7
Cho, Y.8
Zhang, B.T.9
Kim, V.N.10
-
19
-
-
33745944196
-
Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses
-
10.1146/annurev.arplant.57.032905.105444 16669782
-
Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. K Yamaguchi-Shinozaki K Shinozaki, Annu Rev Plant Biol 2006 57 781 803 10.1146/annurev.arplant.57.032905.105444 16669782
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 781-803
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
20
-
-
48249142558
-
Sequence variation of MicroRNAs and their binding sites in Arabidopsis
-
10.1104/pp.108.116582 18305205
-
Sequence variation of MicroRNAs and their binding sites in Arabidopsis. IM Ehrenreich MD Purugganan, Plant Physiol 2008 146 4 1974 1982 10.1104/pp.108.116582 18305205
-
(2008)
Plant Physiol
, vol.146
, Issue.4
, pp. 1974-1982
-
-
Ehrenreich, I.M.1
Purugganan, M.D.2
-
21
-
-
0037162702
-
Prediction of plant microRNA targets
-
10.1016/S0092-8674(02)00863-2 12202040
-
Prediction of plant microRNA targets. MW Rhoades BJ Reinhart LP Lim CB Burge B Bartel DP Bartel, Cell 2002 110 4 513 520 10.1016/S0092-8674(02)00863-2 12202040
-
(2002)
Cell
, vol.110
, Issue.4
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
22
-
-
0038076109
-
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
-
10.1016/S0960-9822(03)00281-1 12725739
-
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Z Xie KD Kasschau JC Carrington, Curr Biol 2003 13 9 784 789 10.1016/S0960-9822(03)00281-1 12725739
-
(2003)
Curr Biol
, vol.13
, Issue.9
, pp. 784-789
-
-
Xie, Z.1
Kasschau, K.D.2
Carrington, J.C.3
-
23
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
16040653 10.1104/pp.105.062943
-
Expression of Arabidopsis MIRNA genes. Z Xie E Allen N Fahlgren A Calamar SA Givan JC Carrington, Plant Physiol 2005 138 4 2145 2154 16040653 10.1104/pp.105.062943
-
(2005)
Plant Physiol
, vol.138
, Issue.4
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
24
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
10.1111/j.1365-313X.2006.02697.x 16623887
-
Conservation and divergence of plant microRNA genes. B Zhang X Pan CH Cannon GP Cobb TA Anderson, Plant J 2006 46 2 243 259 10.1111/j.1365-313X.2006. 02697.x 16623887
-
(2006)
Plant J
, vol.46
, Issue.2
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
25
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
15131082 10.1101/gad.1201404
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. H Vaucheret F Vazquez P Crete DP Bartel, Genes Dev 2004 18 10 1187 1197 15131082 10.1101/gad.1201404
-
(2004)
Genes Dev
, vol.18
, Issue.10
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
26
-
-
33645967150
-
AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1
-
16600876 10.1016/j.molcel.2006.03.011
-
AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. H Vaucheret AC Mallory DP Bartel, Mol Cell 2006 22 1 129 136 16600876 10.1016/j.molcel.2006.03.011
-
(2006)
Mol Cell
, vol.22
, Issue.1
, pp. 129-136
-
-
Vaucheret, H.1
Mallory, A.C.2
Bartel, D.P.3
-
27
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
10.1126/science.1128691 16973872
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). GA Tuskan S Difazio S Jansson J Bohlmann I Grigoriev U Hellsten N Putnam S Ralph S Rombauts A Salamov, Science 2006 313 5793 1596 1604 10.1126/science.1128691 16973872
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
-
28
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
12952885 10.1101/gr.1224503
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes. L Li CJ Stoeckert Jr DS Roos, Genome Res 2003 13 9 2178 2189 12952885 10.1101/gr.1224503
-
(2003)
Genome Res
, vol.13
, Issue.9
, pp. 2178-2189
-
-
Li, L.1
Jr J., S.C.2
Roos, D.S.3
-
29
-
-
33745478966
-
Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
-
16617098 10.1105/tpc.106.041111
-
Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. ME Schranz T Mitchell-Olds, Plant Cell 2006 18 5 1152 1165 16617098 10.1105/tpc.106.041111
-
(2006)
Plant Cell
, vol.18
, Issue.5
, pp. 1152-1165
-
-
Schranz, M.E.1
Mitchell-Olds, T.2
-
30
-
-
0035823864
-
Evolution of the angiosperms: Calibrating the family tree
-
11674868 10.1098/rspb.2001.1782
-
Evolution of the angiosperms: calibrating the family tree. N Wikstrom V Savolainen MW Chase, Proc Biol Sci 2001 268 1482 2211 2220 11674868 10.1098/rspb.2001.1782
-
(2001)
Proc Biol Sci
, vol.268
, Issue.1482
, pp. 2211-2220
-
-
Wikstrom, N.1
Savolainen, V.2
Chase, M.W.3
-
31
-
-
33947667480
-
Identification of plant promoter constituents by analysis of local distribution of short sequences
-
17346352 10.1186/1471-2164-8-67
-
Identification of plant promoter constituents by analysis of local distribution of short sequences. YY Yamamoto H Ichida M Matsui J Obokata T Sakurai M Satou M Seki K Shinozaki T Abe, BMC Genomics 2007 8 67 17346352 10.1186/1471-2164-8-67
-
(2007)
BMC Genomics
, vol.8
, pp. 67
-
-
Yamamoto, Y.Y.1
Ichida, H.2
Matsui, M.3
Obokata, J.4
Sakurai, T.5
Satou, M.6
Seki, M.7
Shinozaki, K.8
Abe, T.9
-
32
-
-
0345863918
-
AthaMap: An online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome
-
14681436 10.1093/nar/gkh017
-
AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome. NO Steffens C Galuschka M Schindler L Bulow R Hehl, Nucleic Acids Res 2004 32 Database D368 372 14681436 10.1093/nar/gkh017
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.DATABASE
, pp. 368-372
-
-
Steffens, N.O.1
Galuschka, C.2
Schindler, M.3
Bulow, L.4
Hehl, R.5
-
33
-
-
0345393079
-
Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2
-
10.1046/j.1365-313X.2003.01899.x 14617085
-
Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2. K Sugimoto S Takeda H Hirochika, Plant J 2003 36 4 550 564 10.1046/j.1365-313X.2003.01899.x 14617085
-
(2003)
Plant J
, vol.36
, Issue.4
, pp. 550-564
-
-
Sugimoto, K.1
Takeda, S.2
Hirochika, H.3
-
34
-
-
0034636418
-
B and C floral organ identity functions require SEPALLATA MADS-box genes
-
10.1038/35012103 10821278
-
B and C floral organ identity functions require SEPALLATA MADS-box genes. S Pelaz GS Ditta E Baumann E Wisman MF Yanofsky, Nature 2000 405 6783 200 203 10.1038/35012103 10821278
-
(2000)
Nature
, vol.405
, Issue.6783
, pp. 200-203
-
-
Pelaz, S.1
Ditta, G.S.2
Baumann, E.3
Wisman, E.4
Yanofsky, M.F.5
-
35
-
-
0038602794
-
Assessing the redundancy of MADS-box genes during carpel and ovule development
-
10.1038/nature01741 12840762
-
Assessing the redundancy of MADS-box genes during carpel and ovule development. A Pinyopich GS Ditta B Savidge SJ Liljegren E Baumann E Wisman MF Yanofsky, Nature 2003 424 6944 85 88 10.1038/nature01741 12840762
-
(2003)
Nature
, vol.424
, Issue.6944
, pp. 85-88
-
-
Pinyopich, A.1
Ditta, G.S.2
Savidge, B.3
Liljegren, S.J.4
Baumann, E.5
Wisman, E.6
Yanofsky, M.F.7
-
36
-
-
0030023263
-
DNA binding properties of two Arabidopsis MADS domain proteins: Binding consensus and dimer formation
-
8597661 10.1105/tpc.8.1.81
-
DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. H Huang M Tudor T Su Y Zhang Y Hu H Ma, Plant Cell 1996 8 1 81 94 8597661 10.1105/tpc.8.1.81
-
(1996)
Plant Cell
, vol.8
, Issue.1
, pp. 81-94
-
-
Huang, H.1
Tudor, M.2
Su, T.3
Zhang, Y.4
Hu, Y.5
Ma, H.6
-
37
-
-
52949127350
-
Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species
-
10.1111/j.1096-0031.2008.00207.x
-
Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. M Li J Wunder G Bissoli E Scarponi S Gazzani E Barbaro H Saedler C Varotto, Cladistics 2008 24 5 727 745 10.1111/j.1096-0031.2008.00207.x
-
(2008)
Cladistics
, vol.24
, Issue.5
, pp. 727-745
-
-
Li, M.1
Wunder, J.2
Bissoli, G.3
Scarponi, E.4
Gazzani, S.5
Barbaro, E.6
Saedler, H.7
Varotto, C.8
-
38
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
15123812 10.1073/pnas.0401799101
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. DH Mathews MD Disney JL Childs SJ Schroeder M Zuker DH Turner, Proc Natl Acad Sci USA 2004 101 19 7287 7292 15123812 10.1073/pnas.0401799101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.19
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
Turner, D.H.6
-
39
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
10.1006/jmbi.1999.2700 10329189
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. DH Mathews J Sabina M Zuker DH Turner, J Mol Biol 1999 288 5 911 940 10.1006/jmbi.1999.2700 10329189
-
(1999)
J Mol Biol
, vol.288
, Issue.5
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
40
-
-
0030927867
-
Searching for regulatory elements in human noncoding sequences
-
10.1016/S0959-440X(97)80058-9 9204283
-
Searching for regulatory elements in human noncoding sequences. L Duret P Bucher, Curr Opin Struct Biol 1997 7 3 399 406 10.1016/S0959-440X(97)80058-9 9204283
-
(1997)
Curr Opin Struct Biol
, vol.7
, Issue.3
, pp. 399-406
-
-
Duret, L.1
Bucher, P.2
-
41
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
12566392 10.1101/gr.751803
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. G Blanc K Hokamp KH Wolfe, Genome Res 2003 13 2 137 144 12566392 10.1101/gr.751803
-
(2003)
Genome Res
, vol.13
, Issue.2
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
42
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
10.1038/nature01521 12660784
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. JE Bowers BA Chapman J Rong AH Paterson, Nature 2003 422 6930 433 438 10.1038/nature01521 12660784
-
(2003)
Nature
, vol.422
, Issue.6930
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
43
-
-
10244243802
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
-
10.1093/bioinformatics/bth374 15217813
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. E Bonnet J Wuyts P Rouze Y Van de Peer, Bioinformatics 2004 20 17 2911 2917 10.1093/bioinformatics/bth374 15217813
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 2911-2917
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
De, P.Y.V.4
-
44
-
-
47249141071
-
Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae
-
10.1093/molbev/msn029 18296705
-
Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. N Warthmann S Das C Lanz D Weigel, Mol Biol Evol 2008 25 5 892 902 10.1093/molbev/msn029 18296705
-
(2008)
Mol Biol Evol
, vol.25
, Issue.5
, pp. 892-902
-
-
Warthmann, N.1
Das, S.2
Lanz, C.3
Weigel, D.4
-
45
-
-
33644874362
-
The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination
-
10.1111/j.1365-313X.2005.02588.x 16359389
-
The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination. PP Liu N Koizuka RC Martin H Nonogaki, Plant J 2005 44 6 960 971 10.1111/j.1365-313X.2005.02588.x 16359389
-
(2005)
Plant J
, vol.44
, Issue.6
, pp. 960-971
-
-
Liu, P.P.1
Koizuka, N.2
Martin, R.C.3
Nonogaki, H.4
-
46
-
-
33749984008
-
Characterization of DGCR8/Pasha, the essential cofactor for Drosha in primary miRNA processing
-
16963499 10.1093/nar/gkl458
-
Characterization of DGCR8/Pasha, the essential cofactor for Drosha in primary miRNA processing. KH Yeom Y Lee J Han MR Suh VN Kim, Nucleic Acids Res 2006 34 16 4622 4629 16963499 10.1093/nar/gkl458
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.16
, pp. 4622-4629
-
-
Yeom, K.H.1
Lee, Y.2
Han, J.3
Suh, M.R.4
Kim, V.N.5
-
47
-
-
34247334843
-
Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body
-
17369351 10.1073/pnas.0701061104
-
Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body. L Song MH Han J Lesicka N Fedoroff, Proc Natl Acad Sci USA 2007 104 13 5437 5442 17369351 10.1073/pnas.0701061104
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.13
, pp. 5437-5442
-
-
Song, L.1
Han, M.H.2
Lesicka, J.3
Fedoroff, N.4
-
48
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
10.1038/ng1478 15565108
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. E Allen Z Xie AM Gustafson GH Sung JW Spatafora JC Carrington, Nat Genet 2004 36 12 1282 1290 10.1038/ng1478 15565108
-
(2004)
Nat Genet
, vol.36
, Issue.12
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
49
-
-
31044434491
-
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis
-
16428603 10.1261/rna.2146906
-
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis. Y Kurihara Y Takashi Y Watanabe, Rna 2006 12 2 206 212 16428603 10.1261/rna.2146906
-
(2006)
Rna
, vol.12
, Issue.2
, pp. 206-212
-
-
Kurihara, Y.1
Takashi, Y.2
Watanabe, Y.3
-
50
-
-
33745827752
-
Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice
-
10.1038/sj.cr.7310062 16699546
-
Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice. D Jiang C Yin A Yu X Zhou W Liang Z Yuan Y Xu Q Yu T Wen D Zhang, Cell Res 2006 16 5 507 518 10.1038/sj.cr.7310062 16699546
-
(2006)
Cell Res
, vol.16
, Issue.5
, pp. 507-518
-
-
Jiang, D.1
Yin, C.2
Yu, A.3
Zhou, X.4
Liang, W.5
Yuan, Z.6
Xu, Y.7
Yu, Q.8
Wen, T.9
Zhang, D.10
-
51
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
17299599 10.1371/journal.pone.0000219
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. N Fahlgren MD Howell KD Kasschau EJ Chapman CM Sullivan JS Cumbie SA Givan TF Law SR Grant JL Dangl, PLoS ONE 2007 2 2 e219 17299599 10.1371/journal.pone.0000219
-
(2007)
PLoS ONE
, vol.2
, Issue.2
, pp. 219
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
-
52
-
-
33645509923
-
Evolution of Arabidopsis microRNA families through duplication events
-
10.1101/gr.4680506
-
Evolution of Arabidopsis microRNA families through duplication events. C Maher L Stein D Ware, Genome Research 2007 16 4 510 519 10.1101/gr.4680506
-
(2007)
Genome Research
, vol.16
, Issue.4
, pp. 510-519
-
-
Maher, C.1
Stein, L.2
Ware, D.3
-
53
-
-
0030076323
-
Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes
-
10.1006/mpev.1996.0004 8673285
-
Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes. DL Gumucio DA Shelton W Zhu D Millinoff T Gray JH Bock JL Slightom M Goodman, Mol Phylogenet Evol 1996 5 1 18 32 10.1006/mpev.1996.0004 8673285
-
(1996)
Mol Phylogenet Evol
, vol.5
, Issue.1
, pp. 18-32
-
-
Gumucio, D.L.1
Shelton, D.A.2
Zhu, W.3
Millinoff, D.4
Gray, T.5
Bock, J.H.6
Slightom, J.L.7
Goodman, M.8
-
54
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
10.1016/j.devcel.2005.01.018 15809034
-
Specific effects of microRNAs on the plant transcriptome. R Schwab JF Palatnik M Riester C Schommer M Schmid D Weigel, Dev Cell 2005 8 4 517 527 10.1016/j.devcel.2005.01.018 15809034
-
(2005)
Dev Cell
, vol.8
, Issue.4
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
55
-
-
33646185558
-
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species
-
16603651 10.1105/tpc.105.040725
-
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. JP Alvarez I Pekker A Goldshmidt E Blum Z Amsellem Y Eshed, Plant Cell 2006 18 5 1134 1151 16603651 10.1105/tpc.105.040725
-
(2006)
Plant Cell
, vol.18
, Issue.5
, pp. 1134-1151
-
-
Alvarez, J.P.1
Pekker, I.2
Goldshmidt, A.3
Blum, E.4
Amsellem, Z.5
Eshed, Y.6
-
56
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue. JJ Doyle JL Doyle, Phytochemistry Bulletin 1987 19 11 15
-
(1987)
Phytochemistry Bulletin
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
57
-
-
34547571027
-
The M-Coffee web server: A meta-method for computing multiple sequence alignments by combining alternative alignment methods
-
17526519 10.1093/nar/gkm333
-
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. S Moretti F Armougom IM Wallace DG Higgins CV Jongeneel C Notredame, Nucleic Acids Res 2007 35 Web Server W645 648 17526519 10.1093/nar/gkm333
-
(2007)
Nucleic Acids Res
, Issue.WEB SERVER
, pp. 645-648
-
-
Moretti, S.1
Armougom, F.2
Wallace, I.M.3
Higgins, D.G.4
Jongeneel, C.V.5
Notredame, C.6
-
58
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucl Acids Symp Ser 1999 41 95 98
-
(1999)
Nucl Acids Symp ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
59
-
-
12744253685
-
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
-
15590941 10.1101/gr.3007205
-
Mulan: multiple-sequence local alignment and visualization for studying function and evolution. I Ovcharenko GG Loots BM Giardine M Hou J Ma RC Hardison L Stubbs W Miller, Genome Res 2005 15 1 184 194 15590941 10.1101/gr.3007205
-
(2005)
Genome Res
, vol.15
, Issue.1
, pp. 184-194
-
-
Ovcharenko, I.1
Loots, G.G.2
Giardine, B.M.3
Hou, M.4
Ma, J.5
Hardison, R.C.6
Stubbs, L.7
Miller, W.8
-
60
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
7984417 10.1093/nar/22.22.4673
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 22 4673 4680 7984417 10.1093/nar/22.22.4673
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
63
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
10.1093/bioinformatics/14.9.817 9918953
-
MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 9 817 818 10.1093/bioinformatics/14.9.817 9918953
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
64
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092 17488738
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Mol Biol Evol 2007 24 8 1596 1599 10.1093/molbev/msm092 17488738
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
65
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
10.1093/bioinformatics/btg359 14668244
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods. J Rozas JC Sanchez-DelBarrio X Messeguer R Rozas, Bioinformatics 2003 19 18 2496 2497 10.1093/bioinformatics/btg359 14668244
-
(2003)
Bioinformatics
, vol.19
, Issue.18
, pp. 2496-2497
-
-
Rozas, J.1
Sanchez-Delbarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
66
-
-
33644750115
-
MiRBase: MicroRNA sequences, targets and gene nomenclature
-
16381832 10.1093/nar/gkj112
-
miRBase: microRNA sequences, targets and gene nomenclature. S Griffiths-Jones RJ Grocock S van Dongen A Bateman AJ Enright, Nucleic Acids Res 2006 34 Database D140 144 16381832 10.1093/nar/gkj112
-
(2006)
Nucleic Acids Res
, Issue.DATABASE
, pp. 140-144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
67
-
-
0031599142
-
Mersenne twister: A 623-dimensionally equidistributed uniform pseudo-random number generator
-
10.1145/272991.272995
-
Mersenne twister: a 623-dimensionally equidistributed uniform pseudo-random number generator. M Matsumoto T Nishimura, ACM Trans Model Comput Simul 1998 8 1 3 30 10.1145/272991.272995
-
(1998)
ACM Trans Model Comput Simul
, vol.8
, Issue.1
, pp. 3-30
-
-
Matsumoto, M.1
Nishimura, T.2
-
68
-
-
23144457575
-
Dcode.org anthology of comparative genomic tools
-
15980535 10.1093/nar/gki355
-
Dcode.org anthology of comparative genomic tools. GG Loots I Ovcharenko, Nucleic Acids Res 2005 33 Web Server W56 64 15980535 10.1093/nar/gki355
-
(2005)
Nucleic Acids Res
, Issue.WEB SERVER
, pp. 56-64
-
-
Loots, G.G.1
Ovcharenko, I.2
-
69
-
-
2142738304
-
WebLogo: A sequence logo generator
-
15173120 10.1101/gr.849004
-
WebLogo: a sequence logo generator. GE Crooks G Hon JM Chandonia SE Brenner, Genome Res 2004 14 6 1188 1190 15173120 10.1101/gr.849004
-
(2004)
Genome Res
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
70
-
-
0036581417
-
GATEWAY vectors for Agrobacterium-mediated plant transformation
-
10.1016/S1360-1385(02)02251-3 11992820
-
GATEWAY vectors for Agrobacterium-mediated plant transformation. M Karimi D Inze A Depicker, Trends Plant Sci 2002 7 5 193 195 10.1016/S1360-1385(02) 02251-3 11992820
-
(2002)
Trends Plant Sci
, vol.7
, Issue.5
, pp. 193-195
-
-
Karimi, M.1
Inze, D.2
Depicker, A.3
-
71
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
10.1046/j.1365-313x.1998.00343.x 10069079
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. SJ Clough AF Bent, Plant J 1998 16 6 735 743 10.1046/j.1365-313x.1998.00343.x 10069079
-
(1998)
Plant J
, vol.16
, Issue.6
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
72
-
-
0342444416
-
GUS fusions: Beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants
-
3327686
-
GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. RA Jefferson TA Kavanagh MW Bevan, Embo J 1987 6 13 3901 3907 3327686
-
(1987)
Embo J
, vol.6
, Issue.13
, pp. 3901-3907
-
-
Jefferson, R.A.1
Kavanagh, T.A.2
Bevan, M.W.3
|